View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18309_low_4 (Length: 711)

Name: NF18309_low_4
Description: NF18309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18309_low_4
NF18309_low_4
[»] chr2 (10 HSPs)
chr2 (22-702)||(32785156-32785835)
chr2 (514-702)||(1037536-1037727)
chr2 (25-87)||(32792672-32792734)
chr2 (22-86)||(32799288-32799352)
chr2 (26-85)||(32813476-32813535)
chr2 (22-76)||(28213781-28213835)
chr2 (26-87)||(32310970-32311031)
chr2 (25-73)||(32563818-32563866)
chr2 (514-578)||(44575471-44575535)
chr2 (400-470)||(1037409-1037479)
[»] chr8 (10 HSPs)
chr8 (514-702)||(18315145-18315336)
chr8 (156-311)||(18314842-18314997)
chr8 (516-610)||(32151429-32151523)
chr8 (156-310)||(18318848-18319002)
chr8 (415-471)||(17636157-17636213)
chr8 (415-474)||(17627819-17627878)
chr8 (198-243)||(32151732-32151777)
chr8 (198-297)||(17635903-17636002)
chr8 (198-305)||(17643197-17643304)
chr8 (660-701)||(34936184-34936225)
[»] chr4 (23 HSPs)
chr4 (514-691)||(1600466-1600646)
chr4 (514-701)||(8186963-8187153)
chr4 (514-702)||(55908600-55908791)
chr4 (514-702)||(1548298-1548487)
chr4 (640-701)||(8184031-8184092)
chr4 (406-474)||(547193-547261)
chr4 (640-700)||(1519143-1519203)
chr4 (514-570)||(12121329-12121385)
chr4 (551-616)||(1552676-1552741)
chr4 (514-570)||(1489233-1489289)
chr4 (656-691)||(659756-659791)
chr4 (156-238)||(532589-532671)
chr4 (514-607)||(7225755-7225851)
chr4 (643-702)||(553515-553574)
chr4 (528-606)||(558630-558711)
chr4 (639-690)||(12121457-12121508)
chr4 (640-702)||(532225-532287)
chr4 (534-580)||(532344-532390)
chr4 (406-444)||(532493-532531)
chr4 (418-476)||(641190-641248)
chr4 (640-690)||(1489362-1489412)
chr4 (640-690)||(1537768-1537818)
chr4 (664-702)||(12116600-12116638)
[»] chr6 (5 HSPs)
chr6 (190-316)||(6588521-6588647)
chr6 (514-626)||(7119269-7119381)
chr6 (514-626)||(7131747-7131859)
chr6 (643-698)||(12102306-12102361)
chr6 (656-702)||(28935085-28935131)
[»] scaffold0295 (1 HSPs)
scaffold0295 (514-691)||(496-676)
[»] chr3 (6 HSPs)
chr3 (516-618)||(514602-514707)
chr3 (415-472)||(51113544-51113601)
chr3 (658-698)||(27005791-27005831)
chr3 (516-610)||(1657375-1657472)
chr3 (640-702)||(51120894-51120956)
chr3 (200-237)||(513927-513964)
[»] chr5 (4 HSPs)
chr5 (514-607)||(32267603-32267699)
chr5 (656-702)||(41901552-41901598)
chr5 (656-701)||(37937924-37937969)
chr5 (641-702)||(41889556-41889617)
[»] chr1 (4 HSPs)
chr1 (514-607)||(9581199-9581295)
chr1 (514-607)||(9586767-9586863)
chr1 (192-225)||(9587040-9587073)
chr1 (418-475)||(52082860-52082917)


Alignment Details
Target: chr2 (Bit Score: 487; Significance: 0; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 22 - 702
Target Start/End: Original strand, 32785156 - 32785835
Alignment:
Q  22 aaggcataacagaacattttcatttgttgatatttactgcagccttgcaacactatagtaaacattaacactatagtttaaaagttctgaaatcttcctg 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||                  |||||||||||||||||||||| |||||||    
T  32785156 aaggcataacagaacattttcatttgttgatatttactgcagccttgcaaca------------------ctatagtttaaaagttctgaaagcttcctg 32785237  T
Q  122 aatggaatagaatctctttcaccgtcattgttccaactccgcaaggttaatcttactggtcaatatttcatcaacaatcaatcgcttttccacttgttca 221  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||    
T  32785238 aatggaatagaatctctttcaccgtcattgttccaactccacaaggttaatcttactggtcattattacatcaacaatcaatcgcttttccacttgttca 32785337  T
Q  222 aaaacttgaagcttctcaaagaagccatcatatttgactgtcataaaatatccaatgccggtatagcttctgctctccgtgagacaccaatattgcaagt 321  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32785338 aaaacttgaagcttctcaaagaagccatcatatttgactgtcataaaatatccaatgccggtatagcttctgctctccgtgagacaccaatattgcaagt 32785437  T
Q  322 ccgacaaacgtgcaaccttgtttacactcctttg---ct--tctccacttaatgagattagaacggcagacaaaggtacatgtgaaaaaagtgtacaaaa 416  Q
    |||||||||||||||||||||||||||||||| |   ||  ||| |||||||| ||||||||| |||||||||||||||||| | |||||||||||||||    
T  32785438 ccgacaaacgtgcaaccttgtttacactccttaggaactgctcttcacttaataagattagaatggcagacaaaggtacatg-ggaaaaagtgtacaaaa 32785536  T
Q  417 ttctaattctttgatggattttgttgtaatccctcaattaaagtttctccatttggctc--------------agagatgaaagcatcaggatgttttct 502  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||              |||||||||||||||||||||||||||    
T  32785537 ttctaattctttgatggattttgttgtaatccctcaattaaagtttctccatttggctcgcaattattggttaagagatgaaagcatcaggatgttttct 32785636  T
Q  503 tctannnnnnnccaatttgcaactacttgatttgagctattgctataacatatctgaagaaggtatttgtcaatttttaagatgttctaagattagacat 602  Q
    ||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32785637 tcta-ttttttccaatttgcaactacttgatttgagctattgctataacatatctgaagaaggtatttgtcaatttttaagatgttctaagattagacat 32785735  T
Q  603 ttgaatttggcccacttttcaagaatcgagcaccctcgaatgaactttaaatctcccaaactagaggtgttgaacttgtcacatacaagaattgatgatg 702  Q
    |||||||||| ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  32785736 ttgaatttggaccacttttcaagaatcgagcaccgtcgaatgaactttaaagctcccaaactagaggtgttgaacttgtcacatacaagaattgatgatg 32785835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 514 - 702
Target Start/End: Original strand, 1037536 - 1037727
Alignment:
Q  514 ccaatttgcaactacttgatttgagctattgctataacatatctgaagaaggtatttgtcaattttta---agatgttctaagattagacatttgaattt 610  Q
    ||||||||||| | |||||||||||||  ||| |||||||||||||||||||||||||| || |||||   ||||||| |||| ||||||||||||||||    
T  1037536 ccaatttgcaatttcttgatttgagctcctgccataacatatctgaagaaggtatttgtgaagttttaaggagatgttgtaaggttagacatttgaattt 1037635  T
Q  611 ggcccacttttcaagaatcgagcaccctcgaatgaactttaaatctcccaaactagaggtgttgaacttgtcacatacaagaattgatgatg 702  Q
     ||| ||| ||||||| |  | |  | | |||| |||||||||  |||  || |||||||||| ||||||||||||||| |  |||||||||    
T  1037636 agcctactattcaagagtgaaactacttagaataaactttaaagttcctgaattagaggtgtttaacttgtcacatacatgtgttgatgatg 1037727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 25 - 87
Target Start/End: Original strand, 32792672 - 32792734
Alignment:
Q  25 gcataacagaacattttcatttgttgatatttactgcagccttgcaacactatagtaaacatt 87  Q
    ||||||||||||| ||| ||||||| ||||||| |||||||||||||||||||||||||||||    
T  32792672 gcataacagaacaatttgatttgtttatatttattgcagccttgcaacactatagtaaacatt 32792734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 22 - 86
Target Start/End: Original strand, 32799288 - 32799352
Alignment:
Q  22 aaggcataacagaacattttcatttgttgatatttactgcagccttgcaacactatagtaaacat 86  Q
    ||||||||| |||||| ||| ||||||||||||||| |||||||||||||||||| |||||||||    
T  32799288 aaggcataaaagaacactttgatttgttgatatttattgcagccttgcaacactagagtaaacat 32799352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 26 - 85
Target Start/End: Original strand, 32813476 - 32813535
Alignment:
Q  26 cataacagaacattttcatttgttgatatttactgcagccttgcaacactatagtaaaca 85  Q
    |||||||||||| ||| ||||||| ||||||| |||||||||||||||||| ||||||||    
T  32813476 cataacagaacactttgatttgtttatatttattgcagccttgcaacactaaagtaaaca 32813535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 76
Target Start/End: Original strand, 28213781 - 28213835
Alignment:
Q  22 aaggcataacagaacattttcatttgttgatatttactgcagccttgcaacacta 76  Q
    |||||||||||||||| ||| |||| |||||||||| ||||||||||||||||||    
T  28213781 aaggcataacagaacactttgatttattgatatttattgcagccttgcaacacta 28213835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 26 - 87
Target Start/End: Complemental strand, 32311031 - 32310970
Alignment:
Q  26 cataacagaacattttcatttgttgatatttactgcagccttgcaacactatagtaaacatt 87  Q
    |||||||||||| ||| | ||||| ||||||| |||||||||||||||||| ||||||||||    
T  32311031 cataacagaacactttgacttgtttatatttattgcagccttgcaacactaaagtaaacatt 32310970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 25 - 73
Target Start/End: Original strand, 32563818 - 32563866
Alignment:
Q  25 gcataacagaacattttcatttgttgatatttactgcagccttgcaaca 73  Q
    ||||||||||||| ||| ||||||| ||||||| |||||||||||||||    
T  32563818 gcataacagaacactttgatttgtttatatttattgcagccttgcaaca 32563866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 514 - 578
Target Start/End: Original strand, 44575471 - 44575535
Alignment:
Q  514 ccaatttgcaactacttgatttgagctattgctataacatatctgaagaaggtatttgtcaattt 578  Q
    ||||||||||| ||||||||||||||| ||||||| |||||||   ||||| ||||||| |||||    
T  44575471 ccaatttgcaattacttgatttgagcttttgctattacatatccatagaagatatttgtgaattt 44575535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 400 - 470
Target Start/End: Original strand, 1037409 - 1037479
Alignment:
Q  400 gaaaaaagtgtacaaaattctaattctttgatggattttgttgtaatccctcaattaaagtttctccattt 470  Q
    ||||| |||||| | ||||||||||||| |||||||| |||| ||| || |||||||||||  ||||||||    
T  1037409 gaaaagagtgtagataattctaattcttcgatggattgtgttttaaaccatcaattaaagtcactccattt 1037479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 8e-29; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 514 - 702
Target Start/End: Original strand, 18315145 - 18315336
Alignment:
Q  514 ccaatttgcaactacttgatttgagctattgctataacatatctgaagaaggtatttgtcaattttt---aagatgttctaagattagacatttgaattt 610  Q
    ||||||||||  | |||||||||||||| ||| |||||||| |||||||||||||||||||| ||||   ||| |||||| |||||||||| ||||| ||    
T  18315145 ccaatttgcagttgcttgatttgagctactgcgataacatacctgaagaaggtatttgtcaagttttacgaagttgttctgagattagacagttgaactt 18315244  T
Q  611 ggcccacttttcaagaatcgagcaccctcgaatgaactttaaatctcccaaactagaggtgttgaacttgtcacatacaagaattgatgatg 702  Q
     || |    |||||||||  |||  | | ||||||||||||||  ||||||||| ||||||||||||||||||||||||| | |||||||||    
T  18315245 agctcgtgattcaagaatgaagctacgtggaatgaactttaaagttcccaaactggaggtgttgaacttgtcacatacaaaagttgatgatg 18315336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 156 - 311
Target Start/End: Original strand, 18314842 - 18314997
Alignment:
Q  156 aactccgcaaggttaatcttactggtcaatatttcatcaacaatcaatcgcttttccacttgttcaaaaacttgaagcttctcaaagaagccatcatatt 255  Q
    ||||||| ||||||||| |  ||| ||| || | ||||||| ||||||||||||||||||||||||| ||||  ||||||||| ||||  | ||||||||    
T  18314842 aactccgaaaggttaatttcgctgatcattactacatcaacgatcaatcgcttttccacttgttcaagaactgtaagcttctcgaagagacaatcatatt 18314941  T
Q  256 tgactgtcataaaatatccaatgccggtatagcttctgctctccgtgagacaccaa 311  Q
    | |||||||| ||||| |||| || ||||| |||| |||||||||||||| |||||    
T  18314942 ttactgtcatcaaataaccaacgcgggtattgcttttgctctccgtgagagaccaa 18314997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 516 - 610
Target Start/End: Complemental strand, 32151523 - 32151429
Alignment:
Q  516 aatttgcaactacttgatttgagctattgctataacatatctgaagaaggtatttgtcaatttttaagatgttctaagattagacatttgaattt 610  Q
    ||||||||||| ||||||||||| | |||| ||||||||||||||||||| ||||||||| |||||||||| ||| ||||||| |||||||||||    
T  32151523 aatttgcaactgcttgatttgaggtgttgccataacatatctgaagaaggaatttgtcaagttttaagatgctctgagattaggcatttgaattt 32151429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 156 - 310
Target Start/End: Original strand, 18318848 - 18319002
Alignment:
Q  156 aactccgcaaggttaatcttactggtcaatatttcatcaacaatcaatcgcttttccacttgttcaaaaacttgaagcttctcaaagaagccatcatatt 255  Q
    ||||||| |||||| |||| ||||||||  | |  |||| | ||||||||||| ||||||||||||| |||| |||||||||| |||| ||||||||| |    
T  18318848 aactccgaaaggttgatctcactggtcatcactatatcaccgatcaatcgcttatccacttgttcaagaactggaagcttctcgaagaggccatcatact 18318947  T
Q  256 tgactgtcataaaatatccaatgccggtatagcttctgctctccgtgagacacca 310  Q
    ||||||| || ||||| ||||||  ||||| |||||| | |||| ||||| ||||    
T  18318948 tgactgtgatcaaataaccaatgatggtattgcttcttccctccatgagagacca 18319002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 415 - 471
Target Start/End: Original strand, 17636157 - 17636213
Alignment:
Q  415 aattctaattctttgatggattttgttgtaatccctcaattaaagtttctccatttg 471  Q
    ||||||||||||| |||| |||||||||||| ||||||||| |||| ||||||||||    
T  17636157 aattctaattcttcgatgaattttgttgtaaaccctcaatttaagtctctccatttg 17636213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 415 - 474
Target Start/End: Original strand, 17627819 - 17627878
Alignment:
Q  415 aattctaattctttgatggattttgttgtaatccctcaattaaagtttctccatttggct 474  Q
    ||||||||||||||| ||||||| ||||||| |||||||||||| | |||| ||||||||    
T  17627819 aattctaattctttggtggatttcgttgtaagccctcaattaaaatctctctatttggct 17627878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 198 - 243
Target Start/End: Complemental strand, 32151777 - 32151732
Alignment:
Q  198 atcaatcgcttttccacttgttcaaaaacttgaagcttctcaaaga 243  Q
    ||||||||||||||||||||||||| |||| |||||||||| ||||    
T  32151777 atcaatcgcttttccacttgttcaacaactggaagcttctcgaaga 32151732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 297
Target Start/End: Original strand, 17635903 - 17636002
Alignment:
Q  198 atcaatcgcttttccacttgttcaaaaacttgaagcttctcaaagaagccatcatatttgactgtcataaaatatccaatgccggtatagcttctgctct 297  Q
    ||||||| ||| || |||||||||| || | |||| ||||  ||||||||||||||||  | |||||  ||||| ||||||||||||| || ||||||||    
T  17635903 atcaatctcttctcaacttgttcaagaattggaagtttcttgaagaagccatcatattgaattgtcaacaaataaccaatgccggtattgcctctgctct 17636002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 305
Target Start/End: Original strand, 17643197 - 17643304
Alignment:
Q  198 atcaatcgcttttccacttgttcaaaaacttgaagcttctcaaagaagccatcatatttgactgtcataaaatatccaatgccggtatagcttctgctct 297  Q
    ||||||||||| || |||||||||| ||||| |||| |||  |||| |||||||||||   |||| || ||||| |||| || ||| | |||||||||||    
T  17643197 atcaatcgcttctcaacttgttcaagaacttaaagcatctagaagaggccatcatattgcgctgtgatgaaataaccaacgctggtgttgcttctgctct 17643296  T
Q  298 ccgtgaga 305  Q
     |||||||    
T  17643297 acgtgaga 17643304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 660 - 701
Target Start/End: Original strand, 34936184 - 34936225
Alignment:
Q  660 aaactagaggtgttgaacttgtcacatacaagaattgatgat 701  Q
    ||||||||||||||| |||||||| |||||||| ||||||||    
T  34936184 aaactagaggtgttggacttgtcatatacaagagttgatgat 34936225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 1e-24; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 514 - 691
Target Start/End: Complemental strand, 1600646 - 1600466
Alignment:
Q  514 ccaatttgcaactacttgatttgagctattgctataacatatctgaagaaggtatttgtcaattttta---agatgttctaagattagacatttgaattt 610  Q
    ||||||||||||| ||||||||||||  ||||  |||||||||||||||||||||||||||| |||||   |||| |||||| |||||||||||||| ||    
T  1600646 ccaatttgcaactgcttgatttgagcagttgcattaacatatctgaagaaggtatttgtcaagttttaaggagattttctaaaattagacatttgaactt 1600547  T
Q  611 ggcccacttttcaagaatcgagcaccctcgaatgaactttaaatctcccaaactagaggtgttgaacttgtcacatacaag 691  Q
     ||||| | ||||| |||  |||  |   ||||||||||| ||  ||  ||||| |||||||||||||||||| |||||||    
T  1600546 agcccagtgttcaataatgaagctgcgaggaatgaactttgaagttcttaaactggaggtgttgaacttgtcatatacaag 1600466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 514 - 701
Target Start/End: Original strand, 8186963 - 8187153
Alignment:
Q  514 ccaatttgcaactacttgatttgagctattgctataacatatctgaagaaggtatttgtcaattttt---aagatgttctaagattagacatttgaattt 610  Q
    ||||||||||  | |||||||||||  |||||||| |||||||||||||||||||||||||| ||||    ||||||| | |||||||  ||||||| ||    
T  8186963 ccaatttgcagttgcttgatttgagtcattgctatgacatatctgaagaaggtatttgtcaagttttgaagagatgttgtgagattagggatttgaactt 8187062  T
Q  611 ggcccacttttcaagaatcgagcaccctcgaatgaactttaaatctcccaaactagaggtgttgaacttgtcacatacaagaattgatgat 701  Q
     ||| ||| | ||||| | | || | |  ||||||||||| ||  | ||||||| ||||||||||||||||||||||||||| ||||||||    
T  8187063 agcctactgtccaagagttgggctctccggaatgaactttgaaatttccaaactggaggtgttgaacttgtcacatacaagagttgatgat 8187153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 514 - 702
Target Start/End: Original strand, 55908600 - 55908791
Alignment:
Q  514 ccaatttgcaactacttgatttgagctattgctataacatatctgaagaaggtatttgtcaattttta---agatgttctaagattagacatttgaattt 610  Q
    ||||||||||| | |||||||||||||  ||| |||||||||||||||||||||||||| || || ||   ||||||| |||| ||||||||||||||||    
T  55908600 ccaatttgcaatttcttgatttgagctcctgccataacatatctgaagaaggtatttgtgaagttctaaggagatgttgtaaggttagacatttgaattt 55908699  T
Q  611 ggcccacttttcaagaatcgagcaccctcgaatgaactttaaatctcccaaactagaggtgttgaacttgtcacatacaagaattgatgatg 702  Q
     ||| ||| ||||||| |  | |  | | |||| |||||||||  |||  || |||||||||| ||||||||||||||| |  |||||||||    
T  55908700 agcctactgttcaagagtgaaactacttagaataaactttaaagttcctgaattagaggtgtttaacttgtcacatacatgtgttgatgatg 55908791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 514 - 702
Target Start/End: Original strand, 1548298 - 1548487
Alignment:
Q  514 ccaatttgcaactacttgatttgagctattgctataacatatctgaagaaggtatttgtcaatttttaagatgttctaagattagacatttgaatttggc 613  Q
    ||||||||||||| ||||||||||   |||||  |  |||||| || |||||||||||| || |||||||||||| |||||||||||| ||||| || ||    
T  1548298 ccaatttgcaactgcttgatttgattaattgcagtggcatatcagacgaaggtatttgtgaagttttaagatgttgtaagattagacagttgaacttagc 1548397  T
Q  614 ccacttttcaagaatcgagc-accctcgaatgaactttaaatctcccaaactagaggtgttgaacttgtcacatacaagaattgatgatg 702  Q
     |    || || | |  ||| ||  | || |||||||| ||  ||||||||| |||||||||||||||||||||||||| ||||||||||    
T  1548398 tcgtagtttaaaagtgaagctactttggactgaactttgaaattcccaaactggaggtgttgaacttgtcacatacaagtattgatgatg 1548487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 640 - 701
Target Start/End: Original strand, 8184031 - 8184092
Alignment:
Q  640 gaatgaactttaaatctcccaaactagaggtgttgaacttgtcacatacaagaattgatgat 701  Q
    ||||||||||| ||  ||| ||||||||||||||||||||||||||||||||| ||||||||    
T  8184031 gaatgaactttgaagttccgaaactagaggtgttgaacttgtcacatacaagagttgatgat 8184092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 406 - 474
Target Start/End: Complemental strand, 547261 - 547193
Alignment:
Q  406 agtgtacaaaattctaattctttgatggattttgttgtaatccctcaattaaagtttctccatttggct 474  Q
    |||||| | |||||||||||||| | |||||||||||||| ||||||||| |||| |||||||||||||    
T  547261 agtgtagagaattctaattctttcaaggattttgttgtaagccctcaattgaagtctctccatttggct 547193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 640 - 700
Target Start/End: Original strand, 1519143 - 1519203
Alignment:
Q  640 gaatgaactttaaatctcccaaactagaggtgttgaacttgtcacatacaagaattgatga 700  Q
    ||||||||||| ||  ||||||||||||||||||||||||||||||||||||  |||||||    
T  1519143 gaatgaactttgaagttcccaaactagaggtgttgaacttgtcacatacaagggttgatga 1519203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 514 - 570
Target Start/End: Original strand, 12121329 - 12121385
Alignment:
Q  514 ccaatttgcaactacttgatttgagctattgctataacatatctgaagaaggtattt 570  Q
    ||||||||||| | ||||||||||| | |||||||||||||||||||||||||||||    
T  12121329 ccaatttgcaattgcttgatttgagtttttgctataacatatctgaagaaggtattt 12121385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 551 - 616
Target Start/End: Original strand, 1552676 - 1552741
Alignment:
Q  551 catatctgaagaaggtatttgtcaatttttaagatgttctaagattagacatttgaatttggccca 616  Q
    |||||| || |||||||||||| || |||||||||||| |||||||||||||||||| || |||||    
T  1552676 catatcagacgaaggtatttgtgaagttttaagatgttgtaagattagacatttgaacttagccca 1552741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 514 - 570
Target Start/End: Original strand, 1489233 - 1489289
Alignment:
Q  514 ccaatttgcaactacttgatttgagctattgctataacatatctgaagaaggtattt 570  Q
    ||||||||||| | ||| ||||||  |||||||||||||||||||||||||||||||    
T  1489233 ccaatttgcaattgcttaatttgacttattgctataacatatctgaagaaggtattt 1489289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 656 - 691
Target Start/End: Complemental strand, 659791 - 659756
Alignment:
Q  656 tcccaaactagaggtgttgaacttgtcacatacaag 691  Q
    ||||||||||||||||||||||||||||||||||||    
T  659791 tcccaaactagaggtgttgaacttgtcacatacaag 659756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 156 - 238
Target Start/End: Complemental strand, 532671 - 532589
Alignment:
Q  156 aactccgcaaggttaatcttactggtcaatatttcatcaacaatcaatcgcttttccacttgttcaaaaacttgaagcttctc 238  Q
    |||||||||||||||||||| ||  |||  | | ||||||| | |||||||||||||||||||||||||| |  |||||||||    
T  532671 aactccgcaaggttaatctttctactcatgactacatcaacgaccaatcgcttttccacttgttcaaaaattgtaagcttctc 532589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 514 - 607
Target Start/End: Original strand, 7225755 - 7225851
Alignment:
Q  514 ccaatttgcaactacttgatttgagctattgctataacatatctgaagaaggtatttgtcaattttta---agatgttctaagattagacatttgaa 607  Q
    |||||||| | || ||||||||||||| || | ||||||| | |||||||||  |||||||| |||||   ||||||| ||||||||||||||||||    
T  7225755 ccaatttggagctgcttgatttgagctcttcccataacatgtatgaagaaggggtttgtcaagttttacggagatgttgtaagattagacatttgaa 7225851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 643 - 702
Target Start/End: Complemental strand, 553574 - 553515
Alignment:
Q  643 tgaactttaaatctcccaaactagaggtgttgaacttgtcacatacaagaattgatgatg 702  Q
    |||||||||||  || |||||| ||||||||||||||||||  ||||||| |||||||||    
T  553574 tgaactttaaagttctcaaactggaggtgttgaacttgtcatttacaagagttgatgatg 553515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 528 - 606
Target Start/End: Complemental strand, 558711 - 558630
Alignment:
Q  528 cttgatttgagctattgctataacatatctgaagaaggtatttgtcaatttttaag---atgttctaagattagacatttga 606  Q
    |||||||||| ||||||  |||| ||||| ||| |||||||||||||  |||||||   ||||||||| |||||||||||||    
T  558711 cttgatttgatctattgtcataaaatatcagaaaaaggtatttgtcatgttttaaggacatgttctaacattagacatttga 558630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 639 - 690
Target Start/End: Original strand, 12121457 - 12121508
Alignment:
Q  639 cgaatgaactttaaatctcccaaactagaggtgttgaacttgtcacatacaa 690  Q
    |||||||||||| ||  |||||||||||| ||||||||||||||| ||||||    
T  12121457 cgaatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaa 12121508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 640 - 702
Target Start/End: Complemental strand, 532287 - 532225
Alignment:
Q  640 gaatgaactttaaatctcccaaactagaggtgttgaacttgtcacatacaagaattgatgatg 702  Q
    ||||||||||| ||   ||||| ||||||||||||||||||||| ||||||  ||||||||||    
T  532287 gaatgaactttgaagtccccaagctagaggtgttgaacttgtcatatacaaacattgatgatg 532225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 534 - 580
Target Start/End: Complemental strand, 532390 - 532344
Alignment:
Q  534 ttgagctattgctataacatatctgaagaaggtatttgtcaattttt 580  Q
    ||||||||||| |||||||||||| |||||||||||| |||| ||||    
T  532390 ttgagctattgttataacatatctaaagaaggtatttatcaagtttt 532344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 406 - 444
Target Start/End: Complemental strand, 532531 - 532493
Alignment:
Q  406 agtgtacaaaattctaattctttgatggattttgttgta 444  Q
    ||||||||| ||||||||||||||| |||||||||||||    
T  532531 agtgtacaacattctaattctttgaaggattttgttgta 532493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 418 - 476
Target Start/End: Complemental strand, 641248 - 641190
Alignment:
Q  418 tctaattctttgatggattttgttgtaatccctcaattaaagtttctccatttggctca 476  Q
    ||||||||||| || ||||||||||||  || ||| ||||||| |||||||||||||||    
T  641248 tctaattctttcatagattttgttgtacgccgtcagttaaagtgtctccatttggctca 641190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 640 - 690
Target Start/End: Original strand, 1489362 - 1489412
Alignment:
Q  640 gaatgaactttaaatctcccaaactagaggtgttgaacttgtcacatacaa 690  Q
    ||||||||||| ||  |||||||||||| ||||||||||||||| ||||||    
T  1489362 gaatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaa 1489412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 640 - 690
Target Start/End: Original strand, 1537768 - 1537818
Alignment:
Q  640 gaatgaactttaaatctcccaaactagaggtgttgaacttgtcacatacaa 690  Q
    ||||||||||| ||  |||||||||||| ||||||||||||||| ||||||    
T  1537768 gaatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaa 1537818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 664 - 702
Target Start/End: Original strand, 12116600 - 12116638
Alignment:
Q  664 tagaggtgttgaacttgtcacatacaagaattgatgatg 702  Q
    ||||||||||||||||||||||||||||  |||||||||    
T  12116600 tagaggtgttgaacttgtcacatacaagtgttgatgatg 12116638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 7e-20; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 190 - 316
Target Start/End: Original strand, 6588521 - 6588647
Alignment:
Q  190 catcaacaatcaatcgcttttccacttgttcaaaaacttgaagcttctcaaagaagccatcatatttgactgtcataaaatatccaatgccggtatagct 289  Q
    ||||||||||||||||||||||||||||||||| || |  ||||||||| | |||| || ||||||||  |||| | || || ||||||| || || |||    
T  6588521 catcaacaatcaatcgcttttccacttgttcaacaattgtaagcttctccaggaagtcaacatatttggttgtcgtgaattaaccaatgcaggcattgct 6588620  T
Q  290 tctgctctccgtgagacaccaatattg 316  Q
    |||||||||||||||| ||||| ||||    
T  6588621 tctgctctccgtgagagaccaaaattg 6588647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 514 - 626
Target Start/End: Complemental strand, 7119381 - 7119269
Alignment:
Q  514 ccaatttgcaactacttgatttgagctattgctataacatatctgaagaaggtatttgtcaatttttaag---atgttctaagattagacatttgaattt 610  Q
    ||||||| ||||| ||||||||||    |||| |||||||||||||||   ||||||||||| |||||||   |||||||||||||| ||||||||| ||    
T  7119381 ccaatttacaacttcttgatttgaatacttgcaataacatatctgaag---gtatttgtcaagttttaaggagatgttctaagattaaacatttgaactt 7119285  T
Q  611 ggcccacttttcaaga 626  Q
     ||||||| |||||||    
T  7119284 agcccactgttcaaga 7119269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 514 - 626
Target Start/End: Complemental strand, 7131859 - 7131747
Alignment:
Q  514 ccaatttgcaactacttgatttgagctattgctataacatatctgaagaaggtatttgtcaatttttaag---atgttctaagattagacatttgaattt 610  Q
    ||||||| ||||| ||||||||||    |||| |||||||||||||||   ||||||||||| |||||||   |||||||||||||| ||||||||| ||    
T  7131859 ccaatttacaacttcttgatttgaatacttgcaataacatatctgaag---gtatttgtcaagttttaaggagatgttctaagattaaacatttgaactt 7131763  T
Q  611 ggcccacttttcaaga 626  Q
     ||||||| |||||||    
T  7131762 agcccactgttcaaga 7131747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 643 - 698
Target Start/End: Complemental strand, 12102361 - 12102306
Alignment:
Q  643 tgaactttaaatctcccaaactagaggtgttgaacttgtcacatacaagaattgat 698  Q
    |||||||| ||  ||||||||| |||||||||||||||||||||||| || |||||    
T  12102361 tgaactttgaagttcccaaactggaggtgttgaacttgtcacatacatgagttgat 12102306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 656 - 702
Target Start/End: Complemental strand, 28935131 - 28935085
Alignment:
Q  656 tcccaaactagaggtgttgaacttgtcacatacaagaattgatgatg 702  Q
    |||| |||| ||||||||||||||||||||||||||| |||| ||||    
T  28935131 tccccaactcgaggtgttgaacttgtcacatacaagagttgacgatg 28935085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0295 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: scaffold0295
Description:

Target: scaffold0295; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 514 - 691
Target Start/End: Original strand, 496 - 676
Alignment:
Q  514 ccaatttgcaactacttgatttgagctattgctataacatatctgaagaaggtatttgtcaattttta---agatgttctaagattagacatttgaattt 610  Q
    ||||||| ||| | |||||||||||||  ||| |||||||||||||||||||||||||| || || ||   ||||||| ||||  |||||||||||||||    
T  496 ccaatttacaatttcttgatttgagctcctgccataacatatctgaagaaggtatttgtgaagttctaaggagatgttgtaaggctagacatttgaattt 595  T
Q  611 ggcccacttttcaagaatcgagcaccctcgaatgaactttaaatctcccaaactagaggtgttgaacttgtcacatacaag 691  Q
     ||| ||| ||||||| |  | |  | | |||| |||||||||  |||  || |||||||||| |||||||||||||||||    
T  596 agcctactgttcaagagtgaaactacttagaataaactttaaagttcctgaattagaggtgtttaacttgtcacatacaag 676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 516 - 618
Target Start/End: Original strand, 514602 - 514707
Alignment:
Q  516 aatttgcaactacttgatttgagctattgctataacatatctgaagaaggtatttgtcaattttta---agatgttctaagattagacatttgaatttgg 612  Q
    |||||||| ||| ||||||||||||||||  |||||||||||||  || |||| |||||| |||||   ||||| ||||||||||| |||||||| || |    
T  514602 aatttgcagctaattgatttgagctattgtgataacatatctgacaaaagtatctgtcaagttttaaagagatggtctaagattaggcatttgaacttag 514701  T
Q  613 cccact 618  Q
    ||||||    
T  514702 cccact 514707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 415 - 472
Target Start/End: Original strand, 51113544 - 51113601
Alignment:
Q  415 aattctaattctttgatggattttgttgtaatccctcaattaaagtttctccatttgg 472  Q
    ||||||||||||||||||| |||||||||||  || |||||||||| |||||| ||||    
T  51113544 aattctaattctttgatgggttttgttgtaagaccgcaattaaagtctctccagttgg 51113601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 658 - 698
Target Start/End: Original strand, 27005791 - 27005831
Alignment:
Q  658 ccaaactagaggtgttgaacttgtcacatacaagaattgat 698  Q
    ||||||| ||||| |||||||||||||||||||||||||||    
T  27005791 ccaaactggaggtcttgaacttgtcacatacaagaattgat 27005831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 516 - 610
Target Start/End: Complemental strand, 1657472 - 1657375
Alignment:
Q  516 aatttgcaactacttgatttgagctattgctataacatatctgaagaaggtatttgtcaattttta---agatgttctaagattagacatttgaattt 610  Q
    ||||| || ||||||||||||||| ||||| |  ||||||||||||||||||||  |||  |||||   | ||||| ||| |||||||||||||||||    
T  1657472 aatttacagctacttgatttgagccattgcaaagacatatctgaagaaggtattgttcatgttttaatgatatgttgtaacattagacatttgaattt 1657375  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 640 - 702
Target Start/End: Original strand, 51120894 - 51120956
Alignment:
Q  640 gaatgaactttaaatctcccaaactagaggtgttgaacttgtcacatacaagaattgatgatg 702  Q
    ||||||||||| ||  || |||| | ||||||||||||||||| ||||||||| |||||||||    
T  51120894 gaatgaactttgaagttctcaaattggaggtgttgaacttgtcgcatacaagagttgatgatg 51120956  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 237
Target Start/End: Original strand, 513927 - 513964
Alignment:
Q  200 caatcgcttttccacttgttcaaaaacttgaagcttct 237  Q
    ||||||||||||||||||||||||||||  ||||||||    
T  513927 caatcgcttttccacttgttcaaaaactgtaagcttct 513964  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000003; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 514 - 607
Target Start/End: Complemental strand, 32267699 - 32267603
Alignment:
Q  514 ccaatttgcaactacttgatttgagctattgctataacatatctgaagaaggtatttgtcaatttttaag---atgttctaagattagacatttgaa 607  Q
    |||||||||| || |||||||||||| |||| | |  ||||||||||||||||||   ||||||||||||   ||||| ||| ||||||||||||||    
T  32267699 ccaatttgcagctgcttgatttgagcaattgttgtcgcatatctgaagaaggtatcgttcaatttttaaggatatgttgtaacattagacatttgaa 32267603  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 656 - 702
Target Start/End: Original strand, 41901552 - 41901598
Alignment:
Q  656 tcccaaactagaggtgttgaacttgtcacatacaagaattgatgatg 702  Q
    ||||||||| |||||||||||||||||| |||||| | |||||||||    
T  41901552 tcccaaactggaggtgttgaacttgtcatatacaaaagttgatgatg 41901598  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 656 - 701
Target Start/End: Complemental strand, 37937969 - 37937924
Alignment:
Q  656 tcccaaactagaggtgttgaacttgtcacatacaagaattgatgat 701  Q
    |||||| || ||||||||| ||||| ||||||||||||||||||||    
T  37937969 tcccaaccttgaggtgttggacttgacacatacaagaattgatgat 37937924  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 641 - 702
Target Start/End: Original strand, 41889556 - 41889617
Alignment:
Q  641 aatgaactttaaatctcccaaactagaggtgttgaacttgtcacatacaagaattgatgatg 702  Q
    |||||||||||||  ||||||| | |||||||||||||| ||| |||||| | |||||||||    
T  41889556 aatgaactttaaagttcccaaattggaggtgttgaacttatcatatacaaaagttgatgatg 41889617  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 514 - 607
Target Start/End: Complemental strand, 9581295 - 9581199
Alignment:
Q  514 ccaatttgcaactacttgatttgagctattgctataacatatctgaagaaggtatttgtcaattttt---aagatgttctaagattagacatttgaa 607  Q
    |||||||||| || |||||| || || |||||| |||||||||| ||  ||||||||||||| ||||   |||||||| | ||||||||||||||||    
T  9581295 ccaatttgcagctgcttgatctgcgccattgctgtaacatatctaaaagaggtatttgtcaagttttaaaaagatgttgtcagattagacatttgaa 9581199  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 514 - 607
Target Start/End: Complemental strand, 9586863 - 9586767
Alignment:
Q  514 ccaatttgcaactacttgatttgagctattgctataacatatctgaagaaggtatttgtcaattttt---aagatgttctaagattagacatttgaa 607  Q
    |||||||||| || |||||| || || |||||| |||||||||| ||  ||||||||||||| ||||   |||||||| | ||||||||||||||||    
T  9586863 ccaatttgcagctgcttgatctgtgccattgctgtaacatatctaaaagaggtatttgtcaagttttacaaagatgttgtcagattagacatttgaa 9586767  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 225
Target Start/End: Complemental strand, 9587073 - 9587040
Alignment:
Q  192 tcaacaatcaatcgcttttccacttgttcaaaaa 225  Q
    ||||||| ||||||||||||||||||||||||||    
T  9587073 tcaacaaccaatcgcttttccacttgttcaaaaa 9587040  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 418 - 475
Target Start/End: Complemental strand, 52082917 - 52082860
Alignment:
Q  418 tctaattctttgatggattttgttgtaatccctcaattaaagtttctccatttggctc 475  Q
    |||||||||||| |||| |||||||||  ||||||| | |||| ||||||||||||||    
T  52082917 tctaattctttgctggactttgttgtataccctcaagtgaagtctctccatttggctc 52082860  T

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