View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18309_low_40 (Length: 291)
Name: NF18309_low_40
Description: NF18309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18309_low_40 |
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Alignment Details
Target: chr1 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 18 - 281
Target Start/End: Original strand, 44969837 - 44970100
Alignment:
| Q |
18 |
attccaagattcaccctcccacattcttggagggttaaaagagcaaaccatcgattccttgaagaaattgaaggcccaaacccaacatttattccccatg |
117 |
Q |
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| T |
44969837 |
attccaagattcaccctcccgcattattggagggttaaaagagcaaaccatcgattccttgaagaaattgaaggcccaaacccaacatttattccccatg |
44969936 |
T |
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| Q |
118 |
aagggagatggaaaatgggccaacagtatttggagatgctagctataccactaagtgttagtagatacaccccctaccccttttggagtttactccaaga |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44969937 |
aagggagatggaaaatgggccaacagtatttggagatgctagctataccactaagtgttagtagatacaccccctaccccttttggagtttactccaaga |
44970036 |
T |
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| Q |
218 |
ttcccccatccctctccccacctttccctgcacatactatcctagtcctgtcagccaccctttg |
281 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |
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| T |
44970037 |
ttcccccatccctctccccacctttccctgcacatactatcctagtcctgccagacaccctttg |
44970100 |
T |
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