View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18309_low_41 (Length: 281)
Name: NF18309_low_41
Description: NF18309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18309_low_41 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 25495149 - 25494875
Alignment:
| Q |
1 |
ataccaggaataagccctggcataatctttacaggaactacactcaatatttcatttgtagagaagcctgaatgtgttgagtcctctatttgggcaatcg |
100 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |||||||||||||| || | |
|
|
| T |
25495149 |
ataccaggaataagccctggtataatctttacaggaactacactcaatatttcatttgtagagaagcctcagtgtgttgaatcctctatttgggctatag |
25495050 |
T |
|
| Q |
101 |
ttgctggttggcctgcatggataggtatcggtggtgatgaagatcatcaagaatctgaaatcctaactggtaagtttaacattcagaaacatggtttggg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
25495049 |
ttgctggttggcctgcatggataggtattggtggtgatgaagatcatcaagaatctgaaatcctaactgggaagtttaacattcagaaacatggtttggg |
25494950 |
T |
|
| Q |
201 |
gtacaagtttgtattttgtccaacctatactatcccacctggttcttgttatgatattgtgaagattgatgatgt |
275 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25494949 |
gtacaagtttgtattttgtccaacctatactatcccacctggttcttgttatgatattgtgaagattgatgatgt |
25494875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University