View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18309_low_44 (Length: 248)
Name: NF18309_low_44
Description: NF18309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18309_low_44 |
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Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 17 - 222
Target Start/End: Complemental strand, 42741813 - 42741607
Alignment:
| Q |
17 |
actatgcagaagaaaatgatgagaagttttgaaacaatgttgctagcatgtggaagtaatgaagttaa-ggaaattcatggtaccttaacaatggtgcaa |
115 |
Q |
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| T |
42741813 |
actatgcagaagaaaatgatgagaagttttgaaacaatgttgctagcatgtggaagtaatgaagttaaaggaaattcatggtaccttaacaatggtgcaa |
42741714 |
T |
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| Q |
116 |
gcaaccatatgtgcgaacaaatgagcatatatattcttggatcttgatgaatcagtaagtgacaattaatgtctcatttggtggtgatgtaaaaattctc |
215 |
Q |
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| T |
42741713 |
gcaaccatatgtgcgaacaaatgagcatatatattcttggatcttgatgaatcagtaagtgacaattaatgtctcatttggtggtgatgtaaaaattctc |
42741614 |
T |
|
| Q |
216 |
gtgaaag |
222 |
Q |
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|||||| |
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| T |
42741613 |
atgaaag |
42741607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 31 - 222
Target Start/End: Complemental strand, 21745918 - 21745731
Alignment:
| Q |
31 |
aatgatgagaagttttgaaacaatgttgctagcatgtggaagtaatgaagttaaggaaattcatggtaccttaacaatggtgcaagcaaccatatgtgcg |
130 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21745918 |
aatgatgagaagttttgaaacaatgttgctagcatgtggaagtaatgaagttaaggaaattcatggtaccttaacaatggtgcaagcaaccatatgtgcg |
21745819 |
T |
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| Q |
131 |
aacaaatgagcatatatattcttggatcttgatgaatcagtaagtgacaattaatgtctcatttggtggtgatgtaaaaattctcgtgaaag |
222 |
Q |
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| T |
21745818 |
aacaaatgagcatatatattcttggatcttgatgaatcagtaagtgac----aatgtctcatttggtggtgatgtaaaaattctcatgaaag |
21745731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 80
Target Start/End: Complemental strand, 4890721 - 4890685
Alignment:
| Q |
44 |
tttgaaacaatgttgctagcatgtggaagtaatgaag |
80 |
Q |
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|||||||||||| |||||||| ||||||||||||||| |
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| T |
4890721 |
tttgaaacaatgctgctagcacgtggaagtaatgaag |
4890685 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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