View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18309_low_47 (Length: 243)
Name: NF18309_low_47
Description: NF18309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18309_low_47 |
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Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-119; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 26952951 - 26953174
Alignment:
| Q |
1 |
ccagtgaaagctgaaaaaggcataacaatcagcaaactaatcagcaacaagattacaaatggataattaaagcagaatattttcaataccggcaagtgtt |
100 |
Q |
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| T |
26952951 |
ccagtgaaagctgaaaaaggcataacaatcagcaaactaatcagtaacaagattacatatggataattaaagcagaatattttcaataccggcaagtgtt |
26953050 |
T |
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| Q |
101 |
gctgcaccgaataactttgtagacaaaagcatcatcaagccacatgccaacccaataaaaagcaggatagacaagtgatgctgcacatcctctctatcct |
200 |
Q |
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| T |
26953051 |
gctgcaccgaataactttgtagacaaaagcatcatcaagccacatgccaacccaataaaaagcaggatagacaagtgatgctgcacatcctctctatcct |
26953150 |
T |
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| Q |
201 |
atacaaaacatatttacttaactt |
224 |
Q |
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| T |
26953151 |
atacaaaacatatttacttaactt |
26953174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 81 - 207
Target Start/End: Original strand, 27004840 - 27004966
Alignment:
| Q |
81 |
tttcaataccggcaagtgttgctgcaccgaataactttgtagacaaaagcatcatcaagccacatgccaacccaataaaaagcaggatagacaagtgatg |
180 |
Q |
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| T |
27004840 |
tttcaatacctgcgagcgttgttgcaccaaataaccttgtgaaaaaaagcatcgccaagccacatgctaacccaataaaaagcaagacagatatgtgatg |
27004939 |
T |
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| Q |
181 |
ctgcacatcctctctatcctatacaaa |
207 |
Q |
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| T |
27004940 |
ctgcacttcctccctatcctacacaaa |
27004966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 78 - 218
Target Start/End: Complemental strand, 26977354 - 26977215
Alignment:
| Q |
78 |
tattttcaataccggcaagtgttgctgcaccgaataactttgtagacaaaagcatcatcaagccacatgccaacccaataaaaagcaggatagacaagtg |
177 |
Q |
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| T |
26977354 |
tattttcaatacctgcgagcgttgttgcaccaaataacattgtgaacagtagcatcaccaagccacatactaatccaatgaaaagcaagacagatatgtg |
26977255 |
T |
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| Q |
178 |
atgctgcacatcctctctatcctatacaaaacatatttact |
218 |
Q |
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| T |
26977254 |
atgctgcacttcctccctatcctacac-aaacatatttact |
26977215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 79 - 201
Target Start/End: Original strand, 26990298 - 26990420
Alignment:
| Q |
79 |
attttcaataccggcaagtgttgctgcaccgaataactttgtagacaaaagcatcatcaagccacatgccaacccaataaaaagcaggatagacaagtga |
178 |
Q |
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| T |
26990298 |
attttcaatacctgctagcgttgctgcgcctaataaccttgtgaaaaaaagcatcgccgagccacatgctaacccgataaaaagcaagacagatatgtga |
26990397 |
T |
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| Q |
179 |
tgctgcacatcctctctatccta |
201 |
Q |
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| T |
26990398 |
tgctgcacttcctccctatccta |
26990420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 123 - 207
Target Start/End: Original strand, 26945352 - 26945436
Alignment:
| Q |
123 |
acaaaagcatcatcaagccacatgccaacccaataaaaagcaggatagacaagtgatgctgcacatcctctctatcctatacaaa |
207 |
Q |
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||||||||||||| |||||||| |||||||||| |||||||| || ||| | |||||||||||| || ||| ||||||| ||||| |
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| T |
26945352 |
acaaaagcatcatgaagccacaagccaacccaacaaaaagcaagacagatatgtgatgctgcacttcttctgtatcctacacaaa |
26945436 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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