View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18309_low_48 (Length: 243)

Name: NF18309_low_48
Description: NF18309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18309_low_48
NF18309_low_48
[»] chr7 (32 HSPs)
chr7 (123-226)||(17904161-17904264)
chr7 (125-226)||(29427340-29427441)
chr7 (125-224)||(46467513-46467612)
chr7 (125-226)||(26770179-26770280)
chr7 (125-226)||(37179508-37179608)
chr7 (125-223)||(6389732-6389830)
chr7 (125-226)||(6387868-6387969)
chr7 (129-226)||(31503113-31503210)
chr7 (123-222)||(29891006-29891105)
chr7 (124-226)||(9876263-9876364)
chr7 (125-226)||(41922030-41922131)
chr7 (128-224)||(9332364-9332460)
chr7 (125-222)||(4405109-4405206)
chr7 (125-226)||(19523871-19523974)
chr7 (125-223)||(12252069-12252167)
chr7 (140-226)||(33974506-33974592)
chr7 (125-193)||(29722955-29723023)
chr7 (140-226)||(46689878-46689964)
chr7 (125-194)||(43701551-43701620)
chr7 (140-202)||(49011058-49011120)
chr7 (145-226)||(9215641-9215722)
chr7 (125-202)||(31858294-31858371)
chr7 (125-194)||(33379175-33379244)
chr7 (125-224)||(33915717-33915815)
chr7 (123-158)||(17904407-17904442)
chr7 (125-158)||(4405353-4405386)
chr7 (125-158)||(29723381-29723414)
chr7 (125-158)||(29890826-29890859)
chr7 (125-158)||(37179331-37179364)
chr7 (125-157)||(46467335-46467367)
chr7 (125-158)||(6387692-6387725)
chr7 (125-157)||(26770424-26770456)
[»] chr3 (34 HSPs)
chr3 (123-226)||(18996965-18997068)
chr3 (123-226)||(18999504-18999607)
chr3 (125-226)||(29371714-29371815)
chr3 (122-226)||(28228433-28228537)
chr3 (123-226)||(39528747-39528850)
chr3 (125-226)||(1352172-1352273)
chr3 (125-226)||(32677653-32677754)
chr3 (125-226)||(41349547-41349648)
chr3 (125-226)||(39807155-39807256)
chr3 (125-226)||(55365908-55366009)
chr3 (128-224)||(21974152-21974248)
chr3 (128-224)||(21996583-21996679)
chr3 (132-226)||(29014866-29014960)
chr3 (128-224)||(22157261-22157357)
chr3 (131-222)||(38855323-38855414)
chr3 (125-223)||(36738013-36738111)
chr3 (140-222)||(39518422-39518504)
chr3 (125-221)||(32839949-32840044)
chr3 (140-207)||(49041040-49041107)
chr3 (125-194)||(49319347-49319416)
chr3 (125-158)||(1351996-1352029)
chr3 (125-158)||(18997211-18997244)
chr3 (125-158)||(18999750-18999783)
chr3 (125-158)||(29014690-29014723)
chr3 (125-158)||(36737834-36737867)
chr3 (125-158)||(38855561-38855594)
chr3 (125-158)||(39518651-39518684)
chr3 (125-158)||(39528993-39529026)
chr3 (125-158)||(41349371-41349404)
chr3 (122-158)||(39806976-39807012)
chr3 (125-157)||(46878980-46879012)
chr3 (123-158)||(29371536-29371571)
chr3 (123-158)||(32677475-32677510)
chr3 (150-224)||(837370-837442)
[»] chr8 (24 HSPs)
chr8 (123-226)||(2508972-2509075)
chr8 (125-226)||(33837905-33838006)
chr8 (125-226)||(28378947-28379048)
chr8 (130-226)||(13469681-13469777)
chr8 (124-226)||(45334452-45334554)
chr8 (125-226)||(25106211-25106312)
chr8 (125-223)||(27793370-27793468)
chr8 (119-222)||(9739979-9740082)
chr8 (125-226)||(38495648-38495749)
chr8 (125-226)||(32183658-32183759)
chr8 (125-194)||(27024433-27024502)
chr8 (125-192)||(25978969-25979036)
chr8 (169-226)||(2626414-2626472)
chr8 (125-193)||(8235162-8235230)
chr8 (140-187)||(2626667-2626714)
chr8 (125-158)||(25106455-25106488)
chr8 (125-158)||(27027655-27027688)
chr8 (125-158)||(28379191-28379224)
chr8 (125-158)||(33837729-33837762)
chr8 (125-158)||(45334276-45334309)
chr8 (125-157)||(9740231-9740263)
chr8 (160-222)||(3203431-3203492)
chr8 (125-158)||(38495472-38495505)
chr8 (125-157)||(13469508-13469540)
[»] chr6 (16 HSPs)
chr6 (125-226)||(27312292-27312393)
chr6 (125-226)||(32274434-32274535)
chr6 (125-226)||(12174700-12174801)
chr6 (123-226)||(5003880-5003983)
chr6 (127-226)||(8504878-8504977)
chr6 (125-214)||(7156413-7156502)
chr6 (125-226)||(18741947-18742048)
chr6 (125-223)||(29452721-29452820)
chr6 (125-222)||(31171170-31171267)
chr6 (123-173)||(29302500-29302550)
chr6 (186-226)||(2543142-2543182)
chr6 (123-158)||(8504731-8504766)
chr6 (125-158)||(27312114-27312147)
chr6 (124-158)||(32274678-32274712)
chr6 (125-158)||(2543325-2543358)
chr6 (125-157)||(18742191-18742223)
[»] chr5 (23 HSPs)
chr5 (125-226)||(12399122-12399223)
chr5 (125-226)||(34208538-34208639)
chr5 (125-226)||(29874954-29875055)
chr5 (125-226)||(23090298-23090399)
chr5 (125-226)||(4145694-4145795)
chr5 (125-226)||(4695338-4695439)
chr5 (125-222)||(3077597-3077694)
chr5 (140-222)||(42757990-42758072)
chr5 (113-194)||(41610625-41610706)
chr5 (125-194)||(42793040-42793109)
chr5 (140-219)||(12096386-12096466)
chr5 (128-192)||(4434783-4434847)
chr5 (125-158)||(12398946-12398979)
chr5 (125-158)||(29875198-29875231)
chr5 (125-158)||(42757805-42757838)
chr5 (125-158)||(42793562-42793595)
chr5 (125-157)||(23090543-23090575)
chr5 (125-157)||(41610373-41610405)
chr5 (140-174)||(594328-594362)
chr5 (128-194)||(8718028-8718094)
chr5 (125-158)||(34208782-34208815)
chr5 (146-202)||(22528023-22528079)
chr5 (190-222)||(22646089-22646121)
[»] chr1 (28 HSPs)
chr1 (125-226)||(4055484-4055585)
chr1 (125-226)||(4817269-4817370)
chr1 (125-226)||(18126851-18126952)
chr1 (125-226)||(46220259-46220360)
chr1 (125-226)||(47669119-47669220)
chr1 (124-226)||(1236206-1236308)
chr1 (125-226)||(9831503-9831604)
chr1 (125-226)||(10737877-10737978)
chr1 (125-226)||(48564818-48564918)
chr1 (140-226)||(8889457-8889543)
chr1 (126-226)||(7414208-7414308)
chr1 (125-226)||(3384771-3384870)
chr1 (125-204)||(1749521-1749600)
chr1 (125-194)||(33020206-33020275)
chr1 (148-213)||(26842462-26842527)
chr1 (145-221)||(39241172-39241247)
chr1 (123-158)||(47669363-47669398)
chr1 (125-158)||(10737701-10737734)
chr1 (125-158)||(46220503-46220536)
chr1 (126-158)||(1236071-1236103)
chr1 (122-158)||(8889687-8889723)
chr1 (125-156)||(48565063-48565094)
chr1 (128-158)||(9831747-9831777)
chr1 (125-226)||(33846834-33846935)
chr1 (125-226)||(33947043-33947144)
chr1 (125-158)||(33023428-33023461)
chr1 (125-158)||(37875727-37875760)
chr1 (182-222)||(37875849-37875889)
[»] chr2 (15 HSPs)
chr2 (125-226)||(43041025-43041126)
chr2 (127-226)||(15233757-15233856)
chr2 (125-226)||(44104732-44104833)
chr2 (125-226)||(35793083-35793183)
chr2 (125-222)||(41252415-41252512)
chr2 (125-224)||(31296083-31296182)
chr2 (125-224)||(41642891-41642993)
chr2 (140-226)||(31903556-31903641)
chr2 (125-194)||(10118660-10118729)
chr2 (140-192)||(21727684-21727736)
chr2 (125-158)||(10112339-10112372)
chr2 (125-158)||(15233999-15234032)
chr2 (125-194)||(36963131-36963200)
chr2 (125-158)||(43040849-43040882)
chr2 (125-157)||(44104546-44104578)
[»] chr4 (19 HSPs)
chr4 (125-217)||(30469353-30469445)
chr4 (125-225)||(33288582-33288682)
chr4 (128-224)||(39481906-39482002)
chr4 (125-226)||(8955952-8956053)
chr4 (135-226)||(34334342-34334433)
chr4 (125-224)||(45590742-45590841)
chr4 (131-224)||(49162108-49162201)
chr4 (125-222)||(18835705-18835804)
chr4 (125-194)||(19256186-19256255)
chr4 (125-175)||(36016279-36016329)
chr4 (140-194)||(36968353-36968407)
chr4 (140-223)||(50774237-50774325)
chr4 (140-226)||(26025699-26025784)
chr4 (140-222)||(33109081-33109163)
chr4 (123-159)||(19257103-19257139)
chr4 (123-158)||(45590986-45591021)
chr4 (128-158)||(8955779-8955809)
chr4 (125-158)||(49162332-49162365)
chr4 (126-158)||(39482106-39482138)
[»] scaffold0103 (1 HSPs)
scaffold0103 (125-226)||(44619-44721)


Alignment Details
Target: chr7 (Bit Score: 100; Significance: 1e-49; HSPs: 32)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 123 - 226
Target Start/End: Original strand, 17904161 - 17904264
Alignment:
Q  123 actactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagttta 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  17904161 actactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaagttta 17904260  T
Q  223 ccct 226  Q
    ||||    
T  17904261 ccct 17904264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 125 - 226
Target Start/End: Complemental strand, 29427441 - 29427340
Alignment:
Q  125 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  29427441 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaagtttacc 29427342  T
Q  225 ct 226  Q
    ||    
T  29427341 ct 29427340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 125 - 224
Target Start/End: Complemental strand, 46467612 - 46467513
Alignment:
Q  125 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  46467612 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaagtttacc 46467513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 125 - 226
Target Start/End: Original strand, 26770179 - 26770280
Alignment:
Q  125 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  26770179 tactccctccattccttttcttttgatgttttagaacttcaactaaattccaaaacttttgatgttttagtgaatttattattgttttctcaagtttacc 26770278  T
Q  225 ct 226  Q
    ||    
T  26770279 ct 26770280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 125 - 226
Target Start/End: Complemental strand, 37179608 - 37179508
Alignment:
Q  125 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||    
T  37179608 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttct-aagtttacc 37179510  T
Q  225 ct 226  Q
    ||    
T  37179509 ct 37179508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 125 - 223
Target Start/End: Original strand, 6389732 - 6389830
Alignment:
Q  125 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttac 223  Q
    |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  6389732 tactccctccattcattttgttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaagtttac 6389830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 125 - 226
Target Start/End: Complemental strand, 6387969 - 6387868
Alignment:
Q  125 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 224  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||| |||||||||||    
T  6387969 tactccctccattccttttcttttgatgttttagaactgcaactatattccaaaacttttgatgttttagtgaatttgttattgttttatcaagtttacc 6387870  T
Q  225 ct 226  Q
    ||    
T  6387869 ct 6387868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 129 - 226
Target Start/End: Complemental strand, 31503210 - 31503113
Alignment:
Q  129 ccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttaccct 226  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||    
T  31503210 ccctccgttccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttcttaagtttaccct 31503113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 123 - 222
Target Start/End: Complemental strand, 29891105 - 29891006
Alignment:
Q  123 actactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagttta 222  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||    
T  29891105 actactccctccattccttttcttttgatgttttaaaacttcaactatattccaaaatttttgatgttttagtgaatttatgattgttttctcaagttta 29891006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 124 - 226
Target Start/End: Original strand, 9876263 - 9876364
Alignment:
Q  124 ctactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttac 223  Q
    |||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||    
T  9876263 ctactccc-ccattccttttcttttgatgttttaaaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaattttac 9876361  T
Q  224 cct 226  Q
    |||    
T  9876362 cct 9876364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 125 - 226
Target Start/End: Complemental strand, 41922131 - 41922030
Alignment:
Q  125 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 224  Q
    ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| |||||||||||    
T  41922131 tactccctctatttcttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttaatattgttttatcaagtttacc 41922032  T
Q  225 ct 226  Q
    ||    
T  41922031 ct 41922030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 128 - 224
Target Start/End: Original strand, 9332364 - 9332460
Alignment:
Q  128 tccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 224  Q
    ||||||||||  |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| |||||||    
T  9332364 tccctccattttttttcttttgatgttttagaacttcaactatatttcaaaacttttgatgttttagtgaatttattattgttttctcaggtttacc 9332460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 125 - 222
Target Start/End: Original strand, 4405109 - 4405206
Alignment:
Q  125 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagttta 222  Q
    ||||||||||||| ||||||||||||||||||| |||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||| ||||    
T  4405109 tactccctccatttcttttcttttgatgttttaaaacttcaactatattctaaaacatttgatgttttagtgaatttattattgttttctcaatttta 4405206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 125 - 226
Target Start/End: Complemental strand, 19523974 - 19523871
Alignment:
Q  125 tactccctccattccttttcttt--tgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagttta 222  Q
    ||||||||| ||||||||| |||  |||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| |||||||||    
T  19523974 tactccctctattccttttttttgttgatgttttagaacttcaactatattccaaaatttttgatgttttagtgaatttattattgttttatcaagttta 19523875  T
Q  223 ccct 226  Q
    ||||    
T  19523874 ccct 19523871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 125 - 223
Target Start/End: Original strand, 12252069 - 12252167
Alignment:
Q  125 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttac 223  Q
    |||||||||||||  ||||||||||||||||||||||||||||||||||||||||  ||||||||| || || ||||| | |||||||| |||||||||    
T  12252069 tactccctccattttttttcttttgatgttttagaacttcaactatattccaaaatatttgatgttctaatatatttaatcttgttttcccaagtttac 12252167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 140 - 226
Target Start/End: Original strand, 33974506 - 33974592
Alignment:
Q  140 ttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttaccct 226  Q
    ||||||||||||||||| ||||||||||||||||||||||  ||| ||||||||||| ||||| |||| ||||| ||||||||||||    
T  33974506 ttttcttttgatgttttcgaacttcaactatattccaaaatattttatgttttagtatatttaatatttttttcccaagtttaccct 33974592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 125 - 193
Target Start/End: Original strand, 29722955 - 29723023
Alignment:
Q  125 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgtttta 193  Q
    ||||| ||||||||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||||    
T  29722955 tactctctccattccttttcttttgatattttagaacttaaactttattccaaaacttttgatgtttta 29723023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 140 - 226
Target Start/End: Original strand, 46689878 - 46689964
Alignment:
Q  140 ttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttaccct 226  Q
    ||||||||||||||||||||||||||||||||||||||||   ||||||||||||||   ||| |||| ||||| ||||||||||||    
T  46689878 ttttcttttgatgttttagaacttcaactatattccaaaatacttgatgttttagtatggttaatatttttttcccaagtttaccct 46689964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 125 - 194
Target Start/End: Original strand, 43701551 - 43701620
Alignment:
Q  125 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttag 194  Q
    ||||||||||||||||||||||||||||||||||||||| ||||  |||||||||  |||||||||||||    
T  43701551 tactccctccattccttttcttttgatgttttagaacttaaacttcattccaaaaaatttgatgttttag 43701620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 140 - 202
Target Start/End: Complemental strand, 49011120 - 49011058
Alignment:
Q  140 ttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaattta 202  Q
    ||||||||||||||||||| |||||||||||||| |||||| ||||||||||||||| |||||    
T  49011120 ttttcttttgatgttttaggacttcaactatatttcaaaacatttgatgttttagtatattta 49011058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 145 - 226
Target Start/End: Complemental strand, 9215722 - 9215641
Alignment:
Q  145 ttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttaccct 226  Q
    |||||||||||||||||||||||||||||||||||  ||| ||||||||||| || || |||| |||| |||| ||||||||    
T  9215722 ttttgatgttttagaacttcaactatattccaaaatatttaatgttttagtatatgtaatatttttttttcaaatttaccct 9215641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 125 - 202
Target Start/End: Complemental strand, 31858371 - 31858294
Alignment:
Q  125 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaattta 202  Q
    |||||||||||||  |||||||||||||||||| |||||||||||||||  ||||  ||||||||||||||| |||||    
T  31858371 tactccctccattttttttcttttgatgttttacaacttcaactatattttaaaatatttgatgttttagtatattta 31858294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 125 - 194
Target Start/End: Complemental strand, 33379244 - 33379175
Alignment:
Q  125 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttag 194  Q
    ||||||||||||| ||||||||||||||||||||||||||||||  ||| |||||  |||||||||||||    
T  33379244 tactccctccatttcttttcttttgatgttttagaacttcaacttgatttcaaaatatttgatgttttag 33379175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 125 - 224
Target Start/End: Original strand, 33915717 - 33915815
Alignment:
Q  125 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 224  Q
    |||||||||||||  |||||||||| |||||| ||| || ||||||||| |||||  ||||||||||||||| ||||| | || ||||| ||||||||||    
T  33915717 tactccctccattt-ttttcttttgttgtttttgaattttaactatatttcaaaatatttgatgttttagtatatttaatttttttttcccaagtttacc 33915815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 123 - 158
Target Start/End: Complemental strand, 17904442 - 17904407
Alignment:
Q  123 actactccctccattccttttcttttgatgttttag 158  Q
    ||||||||||||||||||||||||||||||||||||    
T  17904442 actactccctccattccttttcttttgatgttttag 17904407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 125 - 158
Target Start/End: Complemental strand, 4405386 - 4405353
Alignment:
Q  125 tactccctccattccttttcttttgatgttttag 158  Q
    ||||||||||||||||||||||||||||||||||    
T  4405386 tactccctccattccttttcttttgatgttttag 4405353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 125 - 158
Target Start/End: Complemental strand, 29723414 - 29723381
Alignment:
Q  125 tactccctccattccttttcttttgatgttttag 158  Q
    ||||||||||||||||||||||||||||||||||    
T  29723414 tactccctccattccttttcttttgatgttttag 29723381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 125 - 158
Target Start/End: Original strand, 29890826 - 29890859
Alignment:
Q  125 tactccctccattccttttcttttgatgttttag 158  Q
    ||||||||||||||||||||||||||||||||||    
T  29890826 tactccctccattccttttcttttgatgttttag 29890859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 125 - 158
Target Start/End: Original strand, 37179331 - 37179364
Alignment:
Q  125 tactccctccattccttttcttttgatgttttag 158  Q
    ||||||||||||||||||||||||||||||||||    
T  37179331 tactccctccattccttttcttttgatgttttag 37179364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 157
Target Start/End: Original strand, 46467335 - 46467367
Alignment:
Q  125 tactccctccattccttttcttttgatgtttta 157  Q
    |||||||||||||||||||||||||||||||||    
T  46467335 tactccctccattccttttcttttgatgtttta 46467367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 158
Target Start/End: Original strand, 6387692 - 6387725
Alignment:
Q  125 tactccctccattccttttcttttgatgttttag 158  Q
    |||| |||||||||||||||||||||||||||||    
T  6387692 tacttcctccattccttttcttttgatgttttag 6387725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 157
Target Start/End: Complemental strand, 26770456 - 26770424
Alignment:
Q  125 tactccctccattccttttcttttgatgtttta 157  Q
    |||||||||||||| ||||||||||||||||||    
T  26770456 tactccctccattcattttcttttgatgtttta 26770424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 100; Significance: 1e-49; HSPs: 34)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 123 - 226
Target Start/End: Original strand, 18996965 - 18997068
Alignment:
Q  123 actactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagttta 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  18996965 actactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaagttta 18997064  T
Q  223 ccct 226  Q
    ||||    
T  18997065 ccct 18997068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 123 - 226
Target Start/End: Original strand, 18999504 - 18999607
Alignment:
Q  123 actactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagttta 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  18999504 actactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaagttta 18999603  T
Q  223 ccct 226  Q
    ||||    
T  18999604 ccct 18999607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 125 - 226
Target Start/End: Complemental strand, 29371815 - 29371714
Alignment:
Q  125 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  29371815 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaagtttacc 29371716  T
Q  225 ct 226  Q
    ||    
T  29371715 ct 29371714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 122 - 226
Target Start/End: Original strand, 28228433 - 28228537
Alignment:
Q  122 aactactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagttt 221  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  28228433 aactactctctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaagttt 28228532  T
Q  222 accct 226  Q
    |||||    
T  28228533 accct 28228537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 123 - 226
Target Start/End: Original strand, 39528747 - 39528850
Alignment:
Q  123 actactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagttta 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||    
T  39528747 actactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttgttattgttttctcaagttta 39528846  T
Q  223 ccct 226  Q
    ||||    
T  39528847 ccct 39528850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 125 - 226
Target Start/End: Complemental strand, 1352273 - 1352172
Alignment:
Q  125 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  1352273 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttgttattgttttctcaagtttacc 1352174  T
Q  225 ct 226  Q
    ||    
T  1352173 ct 1352172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 125 - 226
Target Start/End: Complemental strand, 32677754 - 32677653
Alignment:
Q  125 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 224  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  32677754 tactccctccattccttttcttttgatgttttagaacttcaactatataccaaaacttttgatgttttagtgaatttattattgttttctcaagtttacc 32677655  T
Q  225 ct 226  Q
    ||    
T  32677654 ct 32677653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 125 - 226
Target Start/End: Complemental strand, 41349648 - 41349547
Alignment:
Q  125 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 224  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  41349648 tactccctccattccttttcttttgatgttttagaacttcaactatattctaaaacttttgatgttttagtgaatttgttattgttttctcaagtttacc 41349549  T
Q  225 ct 226  Q
    ||    
T  41349548 ct 41349547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 125 - 226
Target Start/End: Complemental strand, 39807256 - 39807155
Alignment:
Q  125 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 224  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  39807256 tacttcctccattccttttcttttgatgttttagaacttcaactatattacaaaacttttgatgttttagtgaatttgttattgttttctcaagtttacc 39807157  T
Q  225 ct 226  Q
    ||    
T  39807156 ct 39807155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 125 - 226
Target Start/End: Original strand, 55365908 - 55366009
Alignment:
Q  125 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 224  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||| ||||  ||||||||||||||| ||||||||||||||||||||||||||||    
T  55365908 tactcccttcattccttttcttttgatgttttagaacttcaactatatttcaaattttttgatgttttagtgaatttattattgttttctcaagtttacc 55366007  T
Q  225 ct 226  Q
    ||    
T  55366008 ct 55366009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 128 - 224
Target Start/End: Original strand, 21974152 - 21974248
Alignment:
Q  128 tccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 224  Q
    |||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||    
T  21974152 tccctccatttcttttcttttgatgttttagaatttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaggtttacc 21974248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 128 - 224
Target Start/End: Original strand, 21996583 - 21996679
Alignment:
Q  128 tccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 224  Q
    |||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||    
T  21996583 tccctccatttcttttcttttgatgttttagaatttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaggtttacc 21996679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 132 - 226
Target Start/End: Complemental strand, 29014960 - 29014866
Alignment:
Q  132 tccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttaccct 226  Q
    ||||||| |||| |||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  29014960 tccattctttttttttttatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaagtttaccct 29014866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 128 - 224
Target Start/End: Original strand, 22157261 - 22157357
Alignment:
Q  128 tccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 224  Q
    |||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |||||||||||||||||||| |||||||    
T  22157261 tccctccatttcttttcttttgatgttttagaacttcaactatattctaaaacttttgatattttagtgaatttattattgttttctcaggtttacc 22157357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 131 - 222
Target Start/End: Original strand, 38855323 - 38855414
Alignment:
Q  131 ctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagttta 222  Q
    ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||    
T  38855323 ctccattccttttcttttgatgttttaaaacatcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaatttta 38855414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 125 - 223
Target Start/End: Complemental strand, 36738111 - 36738013
Alignment:
Q  125 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttac 223  Q
    |||||| | |||||||||||||||||||||||||||||| |||||||||  |||||||||||||||||||| |||||||||||||||||||||||||||    
T  36738111 tactccattcattccttttcttttgatgttttagaactttaactatattttaaaacttttgatgttttagtgaatttattattgttttctcaagtttac 36738013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 140 - 222
Target Start/End: Original strand, 39518422 - 39518504
Alignment:
Q  140 ttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagttta 222  Q
    |||| ||||||||||||| ||||||||||||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||    
T  39518422 tttttttttgatgttttaaaacttcaactatatttcaaaacttttgatattttagtgaatttattattgttttctcaagttta 39518504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 125 - 221
Target Start/End: Original strand, 32839949 - 32840044
Alignment:
Q  125 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagttt 221  Q
    |||||||||||||| ||||||||| || |||||||||||||||||||||  |||  ||||||||||||||| || |||||||| |||||| ||||||    
T  32839949 tactccctccattcattttctttttatattttagaacttcaactatattttaaattttttgatgttttagtgaa-ttattattattttcttaagttt 32840044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 140 - 207
Target Start/End: Complemental strand, 49041107 - 49041040
Alignment:
Q  140 ttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattatt 207  Q
    ||||||||||||||||||||||||||||||| ||||||||  ||||||||||||||| ||||| ||||    
T  49041107 ttttcttttgatgttttagaacttcaactatgttccaaaatatttgatgttttagtatatttaatatt 49041040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 125 - 194
Target Start/End: Original strand, 49319347 - 49319416
Alignment:
Q  125 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttag 194  Q
    |||| |||||||||||||||||||||||||||||||||| ||||  |||| |||| ||||||||||||||    
T  49319347 tacttcctccattccttttcttttgatgttttagaacttaaacttcattctaaaaattttgatgttttag 49319416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 125 - 158
Target Start/End: Original strand, 1351996 - 1352029
Alignment:
Q  125 tactccctccattccttttcttttgatgttttag 158  Q
    ||||||||||||||||||||||||||||||||||    
T  1351996 tactccctccattccttttcttttgatgttttag 1352029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 125 - 158
Target Start/End: Complemental strand, 18997244 - 18997211
Alignment:
Q  125 tactccctccattccttttcttttgatgttttag 158  Q
    ||||||||||||||||||||||||||||||||||    
T  18997244 tactccctccattccttttcttttgatgttttag 18997211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 125 - 158
Target Start/End: Complemental strand, 18999783 - 18999750
Alignment:
Q  125 tactccctccattccttttcttttgatgttttag 158  Q
    ||||||||||||||||||||||||||||||||||    
T  18999783 tactccctccattccttttcttttgatgttttag 18999750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 125 - 158
Target Start/End: Original strand, 29014690 - 29014723
Alignment:
Q  125 tactccctccattccttttcttttgatgttttag 158  Q
    ||||||||||||||||||||||||||||||||||    
T  29014690 tactccctccattccttttcttttgatgttttag 29014723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 125 - 158
Target Start/End: Original strand, 36737834 - 36737867
Alignment:
Q  125 tactccctccattccttttcttttgatgttttag 158  Q
    ||||||||||||||||||||||||||||||||||    
T  36737834 tactccctccattccttttcttttgatgttttag 36737867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 125 - 158
Target Start/End: Complemental strand, 38855594 - 38855561
Alignment:
Q  125 tactccctccattccttttcttttgatgttttag 158  Q
    ||||||||||||||||||||||||||||||||||    
T  38855594 tactccctccattccttttcttttgatgttttag 38855561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 125 - 158
Target Start/End: Complemental strand, 39518684 - 39518651
Alignment:
Q  125 tactccctccattccttttcttttgatgttttag 158  Q
    ||||||||||||||||||||||||||||||||||    
T  39518684 tactccctccattccttttcttttgatgttttag 39518651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 125 - 158
Target Start/End: Complemental strand, 39529026 - 39528993
Alignment:
Q  125 tactccctccattccttttcttttgatgttttag 158  Q
    ||||||||||||||||||||||||||||||||||    
T  39529026 tactccctccattccttttcttttgatgttttag 39528993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 125 - 158
Target Start/End: Original strand, 41349371 - 41349404
Alignment:
Q  125 tactccctccattccttttcttttgatgttttag 158  Q
    ||||||||||||||||||||||||||||||||||    
T  41349371 tactccctccattccttttcttttgatgttttag 41349404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 122 - 158
Target Start/End: Original strand, 39806976 - 39807012
Alignment:
Q  122 aactactccctccattccttttcttttgatgttttag 158  Q
    ||||||||||| |||||||||||||||||||||||||    
T  39806976 aactactcccttcattccttttcttttgatgttttag 39807012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 157
Target Start/End: Complemental strand, 46879012 - 46878980
Alignment:
Q  125 tactccctccattccttttcttttgatgtttta 157  Q
    |||||||||||||||||||||||||||||||||    
T  46879012 tactccctccattccttttcttttgatgtttta 46878980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 123 - 158
Target Start/End: Original strand, 29371536 - 29371571
Alignment:
Q  123 actactccctccattccttttcttttgatgttttag 158  Q
    |||||||||||||||| |||||||||||||||||||    
T  29371536 actactccctccattcattttcttttgatgttttag 29371571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 123 - 158
Target Start/End: Original strand, 32677475 - 32677510
Alignment:
Q  123 actactccctccattccttttcttttgatgttttag 158  Q
    |||||||||||||||| |||||||||||||||||||    
T  32677475 actactccctccattcattttcttttgatgttttag 32677510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 224
Target Start/End: Original strand, 837370 - 837442
Alignment:
Q  150 atgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 224  Q
    |||||||||||||||||||| |||| |||| ||||||| |||||||| | ||| |||| |||| |||||||||||    
T  837370 atgttttagaacttcaactaaattctaaaa-ttttgatattttagtataattaatatt-ttttttcaagtttacc 837442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 96; Significance: 3e-47; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 123 - 226
Target Start/End: Complemental strand, 2509075 - 2508972
Alignment:
Q  123 actactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagttta 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||    
T  2509075 actactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttgttattgttttctcaagttta 2508976  T
Q  223 ccct 226  Q
    ||||    
T  2508975 ccct 2508972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 125 - 226
Target Start/End: Complemental strand, 33838006 - 33837905
Alignment:
Q  125 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  33838006 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttgttattgttttctcaagtttacc 33837907  T
Q  225 ct 226  Q
    ||    
T  33837906 ct 33837905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 125 - 226
Target Start/End: Original strand, 28378947 - 28379048
Alignment:
Q  125 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 224  Q
    |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  28378947 tactccctccattatttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaagtttacc 28379046  T
Q  225 ct 226  Q
    ||    
T  28379047 ct 28379048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 130 - 226
Target Start/End: Complemental strand, 13469777 - 13469681
Alignment:
Q  130 cctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttaccct 226  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  13469777 cctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatattttagtaaatttataattgttttctcaagtttaccct 13469681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 124 - 226
Target Start/End: Complemental strand, 45334554 - 45334452
Alignment:
Q  124 ctactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttac 223  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |||||||||| ||||||||||    
T  45334554 ctactccctccattccttttcttttgatgttttagaactttaactatattccaaaacttttgatgttttagtgaatttgttattgttttttcaagtttac 45334455  T
Q  224 cct 226  Q
    |||    
T  45334454 cct 45334452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 125 - 226
Target Start/End: Original strand, 25106211 - 25106312
Alignment:
Q  125 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 224  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |||||||| |||||||||||    
T  25106211 tactctctccattccttttcttttgatgttttagaacttcaactatattccaaaatttttgatgttttagtgaatttatgattgttttttcaagtttacc 25106310  T
Q  225 ct 226  Q
    ||    
T  25106311 ct 25106312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 125 - 223
Target Start/End: Complemental strand, 27793468 - 27793370
Alignment:
Q  125 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttac 223  Q
    |||||| ||||||| |||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||    
T  27793468 tactccttccattcattttcttttgatgttttagatcttcaactatattccaaaacttttaatgttttagtgaatttattattgttttctcaagtttac 27793370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 119 - 222
Target Start/End: Original strand, 9739979 - 9740082
Alignment:
Q  119 aacaactactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaag 218  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||  |||||| ||||||||||||||||||| | |||||||||||| |||||||||    
T  9739979 aacaaatactccctccattccttttcttttgatgttttagaacttcatgtatatttcaaaacttttgatgttttactgaatttattattgctttctcaag 9740078  T
Q  219 ttta 222  Q
    ||||    
T  9740079 ttta 9740082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 125 - 226
Target Start/End: Complemental strand, 38495749 - 38495648
Alignment:
Q  125 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 224  Q
    |||| ||||||||| ||||||| ||||||||||||||||||||||||||| |||| |||||||||||| || ||||||||||||||||||||||||||||    
T  38495749 tacttcctccattctttttcttgtgatgttttagaacttcaactatattctaaaatttttgatgttttggtgaatttattattgttttctcaagtttacc 38495650  T
Q  225 ct 226  Q
    ||    
T  38495649 ct 38495648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 125 - 226
Target Start/End: Complemental strand, 32183759 - 32183658
Alignment:
Q  125 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 224  Q
    |||||||| ||||  ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||| ||||| |||| ||||| ||||||||||    
T  32183759 tactcccttcattttttttcttttgatgttttagaacttcaactatattccaaaatatttgatgttttagtatatttaatatttttttcccaagtttacc 32183660  T
Q  225 ct 226  Q
    ||    
T  32183659 ct 32183658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 125 - 194
Target Start/End: Original strand, 27024433 - 27024502
Alignment:
Q  125 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttag 194  Q
    ||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||||    
T  27024433 tactccctccattccttttcttttgatgttttagagcttaaactttattccaaaacttttgatgttttag 27024502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 125 - 192
Target Start/End: Complemental strand, 25979036 - 25978969
Alignment:
Q  125 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgtttt 192  Q
    ||||||||||||| |||||||||||||||||||| ||||||||| |||| |||||| |||||||||||    
T  25979036 tactccctccatttcttttcttttgatgttttaggacttcaactttatttcaaaacatttgatgtttt 25978969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 169 - 226
Target Start/End: Complemental strand, 2626472 - 2626414
Alignment:
Q  169 atattccaaaacttttgatgttttagtaaatttatta-ttgttttctcaagtttaccct 226  Q
    ||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||    
T  2626472 atattccaaaacttttgatgttttagtgaatttattatttgttttctcaagtttaccct 2626414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 125 - 193
Target Start/End: Original strand, 8235162 - 8235230
Alignment:
Q  125 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgtttta 193  Q
    |||||||||||||  ||||||||||||||||||| ||||||| | |||| |||||| ||||||||||||    
T  8235162 tactccctccatttattttcttttgatgttttaggacttcaattttatttcaaaacatttgatgtttta 8235230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 140 - 187
Target Start/End: Complemental strand, 2626714 - 2626667
Alignment:
Q  140 ttttcttttgatgttttagaacttcaactatattccaaaacttttgat 187  Q
    |||| |||| || |||||||||||||||||||||||||||||||||||    
T  2626714 ttttttttttatattttagaacttcaactatattccaaaacttttgat 2626667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 125 - 158
Target Start/End: Complemental strand, 25106488 - 25106455
Alignment:
Q  125 tactccctccattccttttcttttgatgttttag 158  Q
    ||||||||||||||||||||||||||||||||||    
T  25106488 tactccctccattccttttcttttgatgttttag 25106455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 125 - 158
Target Start/End: Complemental strand, 27027688 - 27027655
Alignment:
Q  125 tactccctccattccttttcttttgatgttttag 158  Q
    ||||||||||||||||||||||||||||||||||    
T  27027688 tactccctccattccttttcttttgatgttttag 27027655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 125 - 158
Target Start/End: Complemental strand, 28379224 - 28379191
Alignment:
Q  125 tactccctccattccttttcttttgatgttttag 158  Q
    ||||||||||||||||||||||||||||||||||    
T  28379224 tactccctccattccttttcttttgatgttttag 28379191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 125 - 158
Target Start/End: Original strand, 33837729 - 33837762
Alignment:
Q  125 tactccctccattccttttcttttgatgttttag 158  Q
    ||||||||||||||||||||||||||||||||||    
T  33837729 tactccctccattccttttcttttgatgttttag 33837762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 125 - 158
Target Start/End: Original strand, 45334276 - 45334309
Alignment:
Q  125 tactccctccattccttttcttttgatgttttag 158  Q
    ||||||||||||||||||||||||||||||||||    
T  45334276 tactccctccattccttttcttttgatgttttag 45334309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 157
Target Start/End: Complemental strand, 9740263 - 9740231
Alignment:
Q  125 tactccctccattccttttcttttgatgtttta 157  Q
    |||||||||||||||||||||||||||||||||    
T  9740263 tactccctccattccttttcttttgatgtttta 9740231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 222
Target Start/End: Complemental strand, 3203492 - 3203431
Alignment:
Q  160 acttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagttta 222  Q
    ||||||||||||||  ||||  ||||||||||||||| ||||| |||| ||||||||||||||    
T  3203492 acttcaactatattttaaaatatttgatgttttagtatatttaatatt-ttttctcaagttta 3203431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 158
Target Start/End: Original strand, 38495472 - 38495505
Alignment:
Q  125 tactccctccattccttttcttttgatgttttag 158  Q
    |||||||||||||| |||||||||||||||||||    
T  38495472 tactccctccattcattttcttttgatgttttag 38495505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 157
Target Start/End: Original strand, 13469508 - 13469540
Alignment:
Q  125 tactccctccattccttttcttttgatgtttta 157  Q
    |||||| ||||||||||||||||||||||||||    
T  13469508 tactccttccattccttttcttttgatgtttta 13469540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 94; Significance: 5e-46; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 125 - 226
Target Start/End: Complemental strand, 27312393 - 27312292
Alignment:
Q  125 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 224  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||    
T  27312393 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctcaagtttacc 27312294  T
Q  225 ct 226  Q
    ||    
T  27312293 ct 27312292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 125 - 226
Target Start/End: Original strand, 32274434 - 32274535
Alignment:
Q  125 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  32274434 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttgttattgttttctcaagtttacc 32274533  T
Q  225 ct 226  Q
    ||    
T  32274534 ct 32274535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 125 - 226
Target Start/End: Original strand, 12174700 - 12174801
Alignment:
Q  125 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 224  Q
    |||||||||||||||||||||||| |||||||||||||| || |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  12174700 tactccctccattccttttcttttaatgttttagaactttaaatatattccaaaacttttgatgttttagtgaatttattattgttttctcaagtttacc 12174799  T
Q  225 ct 226  Q
    ||    
T  12174800 ct 12174801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 123 - 226
Target Start/End: Original strand, 5003880 - 5003983
Alignment:
Q  123 actactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagttta 222  Q
    |||||||  ||||||| |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  5003880 actactcattccattcatttttttttgatgttttagaacttcaactatatttcaaaacttttgatgttttagtgaatttattattgttttctcaagttta 5003979  T
Q  223 ccct 226  Q
    ||||    
T  5003980 ccct 5003983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 127 - 226
Target Start/End: Complemental strand, 8504977 - 8504878
Alignment:
Q  127 ctccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttaccct 226  Q
    |||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||| |||||||||    
T  8504977 ctccctccattcattttcttttgatgttttagaacttcaactatatttcaaaacttttgatgttttagtgaatttattattattttctcaggtttaccct 8504878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 125 - 214
Target Start/End: Complemental strand, 7156502 - 7156413
Alignment:
Q  125 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttct 214  Q
    ||||||||||||| |||||||||||||||||||||   ||||||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  7156502 tactccctccatttcttttcttttgatgttttagacaatcaactatattccaaaactttagatgttttagtgaatttattattgttttct 7156413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 125 - 226
Target Start/End: Original strand, 18741947 - 18742048
Alignment:
Q  125 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 224  Q
    ||||||||||||| |||||||||||||||||||| ||||||||| |||| |||||| ||||||||||||||| ||||| |||||| ||||||| ||||||    
T  18741947 tactccctccatttcttttcttttgatgttttaggacttcaactttatttcaaaacatttgatgttttagtatatttaatattgtattctcaaatttacc 18742046  T
Q  225 ct 226  Q
    ||    
T  18742047 ct 18742048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 125 - 223
Target Start/End: Complemental strand, 29452820 - 29452721
Alignment:
Q  125 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttatta-ttgttttctcaagtttac 223  Q
    ||||||||||||| |||||||| ||||||||||||||||||||||||||| |||  | ||||||||||||| ||||||||| ||||||||||||||||||    
T  29452820 tactccctccatttcttttcttctgatgttttagaacttcaactatattctaaatttcttgatgttttagtgaatttattacttgttttctcaagtttac 29452721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 125 - 222
Target Start/End: Complemental strand, 31171267 - 31171170
Alignment:
Q  125 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagttta 222  Q
    ||||||||||||| |||||||||||||| ||||||| ||||| | ||||||||||| || |||||| |||| ||||||||||||||||||||||||||    
T  31171267 tactccctccatttcttttcttttgatgatttagaaattcaaatgtattccaaaacattagatgttgtagtgaatttattattgttttctcaagttta 31171170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 123 - 173
Target Start/End: Complemental strand, 29302550 - 29302500
Alignment:
Q  123 actactccctccattccttttcttttgatgttttagaacttcaactatatt 173  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29302550 actactccctccattccttttcttttgatgttttagaacttcaactatatt 29302500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 186 - 226
Target Start/End: Original strand, 2543142 - 2543182
Alignment:
Q  186 atgttttagtaaatttattattgttttctcaagtttaccct 226  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  2543142 atgttttagtgaatttattattgttttctcaagtttaccct 2543182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 123 - 158
Target Start/End: Original strand, 8504731 - 8504766
Alignment:
Q  123 actactccctccattccttttcttttgatgttttag 158  Q
    ||||||||||||||||||||||||||||||||||||    
T  8504731 actactccctccattccttttcttttgatgttttag 8504766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 125 - 158
Target Start/End: Original strand, 27312114 - 27312147
Alignment:
Q  125 tactccctccattccttttcttttgatgttttag 158  Q
    ||||||||||||||||||||||||||||||||||    
T  27312114 tactccctccattccttttcttttgatgttttag 27312147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 158
Target Start/End: Complemental strand, 32274712 - 32274678
Alignment:
Q  124 ctactccctccattccttttcttttgatgttttag 158  Q
    ||||||||||||||| |||||||||||||||||||    
T  32274712 ctactccctccattcattttcttttgatgttttag 32274678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 158
Target Start/End: Complemental strand, 2543358 - 2543325
Alignment:
Q  125 tactccctccattccttttcttttgatgttttag 158  Q
    |||||||||||||| |||||||||||||||||||    
T  2543358 tactccctccattcgttttcttttgatgttttag 2543325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 157
Target Start/End: Complemental strand, 18742223 - 18742191
Alignment:
Q  125 tactccctccattccttttcttttgatgtttta 157  Q
    ||||||||||||| |||||||||||||||||||    
T  18742223 tactccctccatttcttttcttttgatgtttta 18742191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 94; Significance: 5e-46; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 125 - 226
Target Start/End: Complemental strand, 12399223 - 12399122
Alignment:
Q  125 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  12399223 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttgttattgttttctcaagtttacc 12399124  T
Q  225 ct 226  Q
    ||    
T  12399123 ct 12399122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 125 - 226
Target Start/End: Original strand, 34208538 - 34208639
Alignment:
Q  125 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  34208538 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttgttattgttttctcaagtttacc 34208637  T
Q  225 ct 226  Q
    ||    
T  34208638 ct 34208639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 125 - 226
Target Start/End: Original strand, 29874954 - 29875055
Alignment:
Q  125 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 224  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||    
T  29874954 tactccctccattctttttcttttgatgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctcaagtttacc 29875053  T
Q  225 ct 226  Q
    ||    
T  29875054 ct 29875055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 125 - 226
Target Start/End: Original strand, 23090298 - 23090399
Alignment:
Q  125 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 224  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| ||||| ||||||||||||||||||||||    
T  23090298 tactccctccattccttttcttttgatgttttagaacttcaactgtattccaaaatttttgatgttttagtgaatttgttattgttttctcaagtttacc 23090397  T
Q  225 ct 226  Q
    ||    
T  23090398 ct 23090399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 125 - 226
Target Start/End: Original strand, 4145694 - 4145795
Alignment:
Q  125 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 224  Q
    ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |||||||||||| |||||||||    
T  4145694 tactcgctccattccttttcttttgatgttttagaactttaactatattccaaaacttttgatgttttagtgaatttgttattgttttcttaagtttacc 4145793  T
Q  225 ct 226  Q
    ||    
T  4145794 ct 4145795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 125 - 226
Target Start/End: Complemental strand, 4695439 - 4695338
Alignment:
Q  125 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 224  Q
    |||||||| |||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  4695439 tactcccttcattccttttcttttgattttttagaacttcaactatatttcaaaacttttgatgttttagtgaatttgttattgttttctcaagtttacc 4695340  T
Q  225 ct 226  Q
    ||    
T  4695339 ct 4695338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 125 - 222
Target Start/End: Original strand, 3077597 - 3077694
Alignment:
Q  125 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagttta 222  Q
    |||||||||||||| ||||||||||||||||||||| ||||||||||||  |||||||||||||||||||| ||||| ||||||||||||||||||||    
T  3077597 tactccctccattcattttcttttgatgttttagaatttcaactatattttaaaacttttgatgttttagtgaatttgttattgttttctcaagttta 3077694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 140 - 222
Target Start/End: Complemental strand, 42758072 - 42757990
Alignment:
Q  140 ttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagttta 222  Q
    |||| |||| ||||||||||||||||||||| || ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  42758072 ttttttttttatgttttagaacttcaactatttttcaaaacttttgatgttttagtgaatttattattgttttctcaagttta 42757990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 113 - 194
Target Start/End: Complemental strand, 41610706 - 41610625
Alignment:
Q  113 tattacaacaactactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttag 194  Q
    |||||| |||||||||| ||||||| ||||||||||||||||||||||||| |||| |||||||||||||||||||||||||    
T  41610706 tattactacaactactctctccatttcttttcttttgatgttttagaacttaaactttattccaaaacttttgatgttttag 41610625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 125 - 194
Target Start/End: Original strand, 42793040 - 42793109
Alignment:
Q  125 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttag 194  Q
    ||||| ||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||||    
T  42793040 tactcactccattccttttcttttgatgttttagagcttaaactttattccaaaacttttgatgttttag 42793109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 140 - 219
Target Start/End: Complemental strand, 12096466 - 12096386
Alignment:
Q  140 ttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagta-aatttattattgttttctcaagt 219  Q
    ||||||||||||||||||| ||||||||||||||||||||| |||||||||||| || | |||| |||| |||||||||||    
T  12096466 ttttcttttgatgttttaggacttcaactatattccaaaacatttgatgttttaatatattttaatattcttttctcaagt 12096386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 128 - 192
Target Start/End: Original strand, 4434783 - 4434847
Alignment:
Q  128 tccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgtttt 192  Q
    |||||||||| |||||||||||||||||||| ||||||||| |||| ||| |  |||||||||||    
T  4434783 tccctccatttcttttcttttgatgttttaggacttcaactttatttcaagatatttgatgtttt 4434847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 125 - 158
Target Start/End: Original strand, 12398946 - 12398979
Alignment:
Q  125 tactccctccattccttttcttttgatgttttag 158  Q
    ||||||||||||||||||||||||||||||||||    
T  12398946 tactccctccattccttttcttttgatgttttag 12398979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 125 - 158
Target Start/End: Complemental strand, 29875231 - 29875198
Alignment:
Q  125 tactccctccattccttttcttttgatgttttag 158  Q
    ||||||||||||||||||||||||||||||||||    
T  29875231 tactccctccattccttttcttttgatgttttag 29875198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 125 - 158
Target Start/End: Original strand, 42757805 - 42757838
Alignment:
Q  125 tactccctccattccttttcttttgatgttttag 158  Q
    ||||||||||||||||||||||||||||||||||    
T  42757805 tactccctccattccttttcttttgatgttttag 42757838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 125 - 158
Target Start/End: Complemental strand, 42793595 - 42793562
Alignment:
Q  125 tactccctccattccttttcttttgatgttttag 158  Q
    ||||||||||||||||||||||||||||||||||    
T  42793595 tactccctccattccttttcttttgatgttttag 42793562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 157
Target Start/End: Complemental strand, 23090575 - 23090543
Alignment:
Q  125 tactccctccattccttttcttttgatgtttta 157  Q
    |||||||||||||||||||||||||||||||||    
T  23090575 tactccctccattccttttcttttgatgtttta 23090543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 157
Target Start/End: Original strand, 41610373 - 41610405
Alignment:
Q  125 tactccctccattccttttcttttgatgtttta 157  Q
    |||||||||||||||||||||||||||||||||    
T  41610373 tactccctccattccttttcttttgatgtttta 41610405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 174
Target Start/End: Complemental strand, 594362 - 594328
Alignment:
Q  140 ttttcttttgatgttttagaacttcaactatattc 174  Q
    |||||||||||||||||| ||||||||||||||||    
T  594362 ttttcttttgatgttttaaaacttcaactatattc 594328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 194
Target Start/End: Original strand, 8718028 - 8718094
Alignment:
Q  128 tccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttag 194  Q
    |||||||||| ||||||||||||| |||||  | ||||||| |||| |||||  |||||||||||||    
T  8718028 tccctccatttcttttcttttgatattttaagatttcaactttatttcaaaatatttgatgttttag 8718094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 158
Target Start/End: Complemental strand, 34208815 - 34208782
Alignment:
Q  125 tactccctccattccttttcttttgatgttttag 158  Q
    ||||||||||||||||||| ||||||||||||||    
T  34208815 tactccctccattcctttttttttgatgttttag 34208782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 202
Target Start/End: Original strand, 22528023 - 22528079
Alignment:
Q  146 tttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaattta 202  Q
    |||||| |||||| ||||||| |||| |||||||  ||||||||||||||| |||||    
T  22528023 tttgatattttaggacttcaattatactccaaaatatttgatgttttagtacattta 22528079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 222
Target Start/End: Complemental strand, 22646121 - 22646089
Alignment:
Q  190 tttagtaaatttattattgttttctcaagttta 222  Q
    |||||| ||||||||||||||||||||||||||    
T  22646121 tttagtgaatttattattgttttctcaagttta 22646089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 94; Significance: 5e-46; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 125 - 226
Target Start/End: Original strand, 4055484 - 4055585
Alignment:
Q  125 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||    
T  4055484 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaattaattattgttttctcaagtttacc 4055583  T
Q  225 ct 226  Q
    ||    
T  4055584 ct 4055585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 125 - 226
Target Start/End: Original strand, 4817269 - 4817370
Alignment:
Q  125 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||    
T  4817269 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttatcattgttttctcaagtttacc 4817368  T
Q  225 ct 226  Q
    ||    
T  4817369 ct 4817370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 125 - 226
Target Start/End: Original strand, 18126851 - 18126952
Alignment:
Q  125 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 224  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  18126851 tactccctccattccttttcttttgatgttttagaacttcaactatattctaaaacttttgatgttttagtgaatttattattgttttctcaagtttacc 18126950  T
Q  225 ct 226  Q
    ||    
T  18126951 ct 18126952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 125 - 226
Target Start/End: Original strand, 46220259 - 46220360
Alignment:
Q  125 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 224  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  46220259 tactccctctattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttgttattgttttctcaagtttacc 46220358  T
Q  225 ct 226  Q
    ||    
T  46220359 ct 46220360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 125 - 226
Target Start/End: Original strand, 47669119 - 47669220
Alignment:
Q  125 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| ||||||||||||||||||||||    
T  47669119 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaatttttgatgttttagtgaatttgttattgttttctcaagtttacc 47669218  T
Q  225 ct 226  Q
    ||    
T  47669219 ct 47669220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 124 - 226
Target Start/End: Complemental strand, 1236308 - 1236206
Alignment:
Q  124 ctactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttac 223  Q
    ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  1236308 ctactccctccattcattttcttttgatgttttagaactttaactatattccaaaacttttgatggtttagtgaatttattattgttttctcaagtttac 1236209  T
Q  224 cct 226  Q
    |||    
T  1236208 cct 1236206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 125 - 226
Target Start/End: Original strand, 9831503 - 9831604
Alignment:
Q  125 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 224  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||    
T  9831503 tactccctccattccttttcttttgatgttttagaatttcaactatattccaaaacttttgatgttttagtgaatttgttattattttctcaagtttacc 9831602  T
Q  225 ct 226  Q
    ||    
T  9831603 ct 9831604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 125 - 226
Target Start/End: Complemental strand, 10737978 - 10737877
Alignment:
Q  125 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 224  Q
    |||||||| ||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  10737978 tactcccttcattccttttcttttaatgttttagaacttcaactatattctaaaacttttgatgttttagtgaatttattattgttttctcaagtttacc 10737879  T
Q  225 ct 226  Q
    ||    
T  10737878 ct 10737877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 125 - 226
Target Start/End: Original strand, 48564818 - 48564918
Alignment:
Q  125 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 224  Q
    ||||||||||||| ||||||||| ||||||||| ||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  48564818 tactccctccattacttttcttt-gatgttttaaaacttcaactatattccaaaaattttgatgttttagtgaatttattattgttttctcaagtttacc 48564916  T
Q  225 ct 226  Q
    ||    
T  48564917 ct 48564918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 140 - 226
Target Start/End: Original strand, 8889457 - 8889543
Alignment:
Q  140 ttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttaccct 226  Q
    |||| |||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  8889457 ttttttttttatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaagtttaccct 8889543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 126 - 226
Target Start/End: Original strand, 7414208 - 7414308
Alignment:
Q  126 actccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttaccc 225  Q
    ||||||||||||| |||| |||||||||||||||||||||||||||||  |||  ||||||||||||||| |||||||||||||||||||||||||||||    
T  7414208 actccctccattcatttttttttgatgttttagaacttcaactatattttaaattttttgatgttttagtgaatttattattgttttctcaagtttaccc 7414307  T
Q  226 t 226  Q
    |    
T  7414308 t 7414308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 125 - 226
Target Start/End: Complemental strand, 3384870 - 3384771
Alignment:
Q  125 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 224  Q
    |||||||| ||||| |||||||||||||||||||||| |||||||| |  ||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  3384870 tactcccttcattctttttcttttgatgttttagaacctcaactattt--caaaacttttgatgttttagtgaatttattattgttttctcaagtttacc 3384773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 125 - 204
Target Start/End: Complemental strand, 1749600 - 1749521
Alignment:
Q  125 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttatt 204  Q
    |||| |||| ||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||| ||||||||    
T  1749600 tacttcctctattccttttcttttgatgttttagaactttaattatataccaaaacttttgatgttttagtgaatttatt 1749521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 125 - 194
Target Start/End: Original strand, 33020206 - 33020275
Alignment:
Q  125 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttag 194  Q
    ||||||||||||||||||||||||||||||||||| ||| |||| | |||||||||||||||||||||||    
T  33020206 tactccctccattccttttcttttgatgttttagagcttaaacttttttccaaaacttttgatgttttag 33020275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 148 - 213
Target Start/End: Original strand, 26842462 - 26842527
Alignment:
Q  148 tgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttc 213  Q
    |||||||||||||||||||||||||| |||||  ||||||||||||||| ||||| |||| |||||    
T  26842462 tgatgttttagaacttcaactatatttcaaaatatttgatgttttagtatatttaatatttttttc 26842527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 145 - 221
Target Start/End: Original strand, 39241172 - 39241247
Alignment:
Q  145 ttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagttt 221  Q
    |||| ||||||||||| |||||||||||| ||||||||||| ||||| ||| |||||||||||||| | ||||||||    
T  39241172 ttttaatgttttagaa-ttcaactatatttcaaaacttttgttgtttcagtgaatttattattgttgtatcaagttt 39241247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 123 - 158
Target Start/End: Complemental strand, 47669398 - 47669363
Alignment:
Q  123 actactccctccattccttttcttttgatgttttag 158  Q
    ||||||||||||||||||||||||||||||||||||    
T  47669398 actactccctccattccttttcttttgatgttttag 47669363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 125 - 158
Target Start/End: Original strand, 10737701 - 10737734
Alignment:
Q  125 tactccctccattccttttcttttgatgttttag 158  Q
    ||||||||||||||||||||||||||||||||||    
T  10737701 tactccctccattccttttcttttgatgttttag 10737734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 125 - 158
Target Start/End: Complemental strand, 46220536 - 46220503
Alignment:
Q  125 tactccctccattccttttcttttgatgttttag 158  Q
    ||||||||||||||||||||||||||||||||||    
T  46220536 tactccctccattccttttcttttgatgttttag 46220503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 158
Target Start/End: Original strand, 1236071 - 1236103
Alignment:
Q  126 actccctccattccttttcttttgatgttttag 158  Q
    |||||||||||||||||||||||||||||||||    
T  1236071 actccctccattccttttcttttgatgttttag 1236103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 122 - 158
Target Start/End: Complemental strand, 8889723 - 8889687
Alignment:
Q  122 aactactccctccattccttttcttttgatgttttag 158  Q
    |||||||||||||||||||||| ||||||||||||||    
T  8889723 aactactccctccattccttttattttgatgttttag 8889687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 125 - 156
Target Start/End: Complemental strand, 48565094 - 48565063
Alignment:
Q  125 tactccctccattccttttcttttgatgtttt 156  Q
    ||||||||||||||||||||||||||||||||    
T  48565094 tactccctccattccttttcttttgatgtttt 48565063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 158
Target Start/End: Complemental strand, 9831777 - 9831747
Alignment:
Q  128 tccctccattccttttcttttgatgttttag 158  Q
    |||||||||||||||||||||||||||||||    
T  9831777 tccctccattccttttcttttgatgttttag 9831747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 226
Target Start/End: Complemental strand, 33846935 - 33846834
Alignment:
Q  125 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaattt-attattgttttctcaagtttac 223  Q
    |||||||||||||  ||||||||||||||||||  ||||||| | ||||  ||||  |||||||||| |||| |||| ||| || ||| |||||||||||    
T  33846935 tactccctccattt-ttttcttttgatgttttaagacttcaagtgtattttaaaatatttgatgtttcagtatatttaatttttttttcctcaagtttac 33846837  T
Q  224 cct 226  Q
    |||    
T  33846836 cct 33846834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 226
Target Start/End: Original strand, 33947043 - 33947144
Alignment:
Q  125 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaattt-attattgttttctcaagtttac 223  Q
    |||||||||||||  ||||||||||||||||||  ||||||| | ||||  ||||  |||||||||| |||| |||| ||| || ||| |||||||||||    
T  33947043 tactccctccattt-ttttcttttgatgttttaagacttcaagtgtattttaaaatatttgatgtttcagtatatttaatttttttttcctcaagtttac 33947141  T
Q  224 cct 226  Q
    |||    
T  33947142 cct 33947144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 158
Target Start/End: Complemental strand, 33023461 - 33023428
Alignment:
Q  125 tactccctccattccttttcttttgatgttttag 158  Q
    |||||||||||||||||||||||||| |||||||    
T  33023461 tactccctccattccttttcttttgacgttttag 33023428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 158
Target Start/End: Original strand, 37875727 - 37875760
Alignment:
Q  125 tactccctccattccttttcttttgatgttttag 158  Q
    ||||||||||||| ||||||||||||||||||||    
T  37875727 tactccctccatttcttttcttttgatgttttag 37875760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 222
Target Start/End: Original strand, 37875849 - 37875889
Alignment:
Q  182 tttgatgttttagtaaatttattattgttttctcaagttta 222  Q
    ||||||||||||||| ||||| | |||||||||||||||||    
T  37875849 tttgatgttttagtatatttaatgttgttttctcaagttta 37875889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 90; Significance: 1e-43; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 125 - 226
Target Start/End: Complemental strand, 43041126 - 43041025
Alignment:
Q  125 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 224  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||    
T  43041126 tactccctccattccttttcttttgatgttttaaaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaattttacc 43041027  T
Q  225 ct 226  Q
    ||    
T  43041026 ct 43041025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 127 - 226
Target Start/End: Original strand, 15233757 - 15233856
Alignment:
Q  127 ctccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttaccct 226  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||    
T  15233757 ctccctctattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttgttattgttttctcaagtttaccct 15233856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 125 - 226
Target Start/End: Complemental strand, 44104833 - 44104732
Alignment:
Q  125 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 224  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||    
T  44104833 tactccctccgttccttttcttttgatgttttagaacttcaactatatttcaaaacttttgatgttttagtgaatttattattattttctcaagtttacc 44104734  T
Q  225 ct 226  Q
    ||    
T  44104733 ct 44104732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 125 - 226
Target Start/End: Complemental strand, 35793183 - 35793083
Alignment:
Q  125 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 224  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||| |||||||||||    
T  35793183 tactccctccattctttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagagaatttattattgtttt-tcaagtttacc 35793085  T
Q  225 ct 226  Q
    ||    
T  35793084 ct 35793083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 125 - 222
Target Start/End: Original strand, 41252415 - 41252512
Alignment:
Q  125 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagttta 222  Q
    |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| ||||||||||||    
T  41252415 tactccctccattccttttctttttatgttttagaacttcaaatatattccaaaacttttgatgttttagtgaatttattattgtgttctcaagttta 41252512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 125 - 224
Target Start/End: Original strand, 31296083 - 31296182
Alignment:
Q  125 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 224  Q
    |||||| ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| ||||||    
T  31296083 tactccttccattctttttcttttgatgttttagaacttcaactatattctaaaacttttgatgttttagtgaatttattattgttttctcaaatttacc 31296182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 125 - 224
Target Start/End: Original strand, 41642891 - 41642993
Alignment:
Q  125 tactccctccattccttttcttttgatgtttt-agaacttcaactata--ttccaaaacttttgatgttttagtaaatttattattgttttctcaagttt 221  Q
    ||||||||||||| |||||||||||||||||| |||| ||||||||||  |||||||||||||||||||||||| |||||||||||||||||||||||||    
T  41642891 tactccctccatttcttttcttttgatgtttttagaatttcaactatatattccaaaacttttgatgttttagtgaatttattattgttttctcaagttt 41642990  T
Q  222 acc 224  Q
    |||    
T  41642991 acc 41642993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 140 - 226
Target Start/End: Complemental strand, 31903641 - 31903556
Alignment:
Q  140 ttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttaccct 226  Q
    |||| |||||||||||||||||||||| |||||||||||  |||||||||||||||||||||||||||||||| || ||||||||||    
T  31903641 tttttttttgatgttttagaacttcaaatatattccaaattttttgatgttttagtaaatttattattgttttatc-agtttaccct 31903556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 125 - 194
Target Start/End: Complemental strand, 10118729 - 10118660
Alignment:
Q  125 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttag 194  Q
    ||||||||||||||||||||||||||| ||||||| ||| |||| |||||||||||||||||||||||||    
T  10118729 tactccctccattccttttcttttgatattttagagcttaaactttattccaaaacttttgatgttttag 10118660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 140 - 192
Target Start/End: Original strand, 21727684 - 21727736
Alignment:
Q  140 ttttcttttgatgttttagaacttcaactatattccaaaacttttgatgtttt 192  Q
    |||||||||||||||||||||||||||||||||| |||||  |||||||||||    
T  21727684 ttttcttttgatgttttagaacttcaactatatttcaaaatatttgatgtttt 21727736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 125 - 158
Target Start/End: Original strand, 10112339 - 10112372
Alignment:
Q  125 tactccctccattccttttcttttgatgttttag 158  Q
    ||||||||||||||||||||||||||||||||||    
T  10112339 tactccctccattccttttcttttgatgttttag 10112372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 125 - 158
Target Start/End: Complemental strand, 15234032 - 15233999
Alignment:
Q  125 tactccctccattccttttcttttgatgttttag 158  Q
    ||||||||||||||||||||||||||||||||||    
T  15234032 tactccctccattccttttcttttgatgttttag 15233999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 125 - 194
Target Start/End: Original strand, 36963131 - 36963200
Alignment:
Q  125 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttag 194  Q
    ||||| ||| |||||||||||||| ||||||||||| || |||| |||| |||||  |||||||||||||    
T  36963131 tactcgctctattccttttcttttaatgttttagaatttaaactttatttcaaaaaatttgatgttttag 36963200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 125 - 158
Target Start/End: Original strand, 43040849 - 43040882
Alignment:
Q  125 tactccctccattccttttcttttgatgttttag 158  Q
    ||||||||||||||||||||||||||||||||||    
T  43040849 tactccctccattccttttcttttgatgttttag 43040882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 157
Target Start/End: Original strand, 44104546 - 44104578
Alignment:
Q  125 tactccctccattccttttcttttgatgtttta 157  Q
    |||||||||||||||||||||||||||||||||    
T  44104546 tactccctccattccttttcttttgatgtttta 44104578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 85; Significance: 1e-40; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 125 - 217
Target Start/End: Complemental strand, 30469445 - 30469353
Alignment:
Q  125 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaa 217  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  30469445 tactcccttcattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaa 30469353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 125 - 225
Target Start/End: Complemental strand, 33288682 - 33288582
Alignment:
Q  125 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 224  Q
    ||||||||||||| ||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  33288682 tactccctccatttcttttcttttgatattttagaacttcaattatattccaaaacttttgatgttttagtgaatttattattgttttctcaagtttacc 33288583  T
Q  225 c 225  Q
    |    
T  33288582 c 33288582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 128 - 224
Target Start/End: Original strand, 39481906 - 39482002
Alignment:
Q  128 tccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 224  Q
    |||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  39481906 tccctccatttcttttcttttgatgttttagaacttcaactattttccaaaacttttgatgttttagtaaatttattattgttttctcaggtttacc 39482002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 125 - 226
Target Start/End: Complemental strand, 8956053 - 8955952
Alignment:
Q  125 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 224  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |||||||||| |||||||||||    
T  8956053 tactccctccattcctttttttttgatgttttagaacttcaactatattacaaaacttttgatgttttagtgaatttgttattgttttatcaagtttacc 8955954  T
Q  225 ct 226  Q
    ||    
T  8955953 ct 8955952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 135 - 226
Target Start/End: Original strand, 34334342 - 34334433
Alignment:
Q  135 attccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttaccct 226  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||    
T  34334342 attccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgctttagtgaatttattattgtcttctcaagtttaccct 34334433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 125 - 224
Target Start/End: Original strand, 45590742 - 45590841
Alignment:
Q  125 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 224  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| ||||||||||| |||||||||||    
T  45590742 tactccctccattcattttcttttgatgttttagaacttcaactatattctaaaacttttgatgttttagtgaattcattattgttttatcaagtttacc 45590841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 131 - 224
Target Start/End: Original strand, 49162108 - 49162201
Alignment:
Q  131 ctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 224  Q
    |||||||| |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| ||||||    
T  49162108 ctccattcattttcttttgatgtttcagaacttcaactatattccaaaatttttgatgttttagtgaatttattattgttttctcaattttacc 49162201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 125 - 222
Target Start/End: Original strand, 18835705 - 18835804
Alignment:
Q  125 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagt--aaatttattattgttttctcaagttta 222  Q
    |||||||| ||||  |||||||||||||||||||||||||||||||||||||||||||| |||||||||||  | || ||||||||||||||||| ||||    
T  18835705 tactcccttcatttattttcttttgatgttttagaacttcaactatattccaaaactttcgatgttttagtgaatatatattattgttttctcaaattta 18835804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 125 - 194
Target Start/End: Original strand, 19256186 - 19256255
Alignment:
Q  125 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttag 194  Q
    ||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||||    
T  19256186 tactccctccattccttttcttttgatgttttagagcttaaactttattccaaaacttttgatgttttag 19256255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 125 - 175
Target Start/End: Original strand, 36016279 - 36016329
Alignment:
Q  125 tactccctccattccttttcttttgatgttttagaacttcaactatattcc 175  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36016279 tactccctccattccttttcttttgatgttttagaacttcaactatattcc 36016329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 140 - 194
Target Start/End: Original strand, 36968353 - 36968407
Alignment:
Q  140 ttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttag 194  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36968353 tttttttttgatgttttagaacttcaactatattccaaaacttttgatgttttag 36968407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 140 - 223
Target Start/End: Complemental strand, 50774325 - 50774237
Alignment:
Q  140 ttttcttttgatgttttagaacttcaactatattccaaaacttttga-----tgttttagtaaatttattattgttttctcaagtttac 223  Q
    |||| ||||||||||||||||||| ||||||||| ||||||||||||     | ||||||| |||||||||||||||||||||||||||    
T  50774325 tttttttttgatgttttagaactttaactatatttcaaaacttttgatacagtattttagtgaatttattattgttttctcaagtttac 50774237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 140 - 226
Target Start/End: Complemental strand, 26025784 - 26025699
Alignment:
Q  140 ttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttaccct 226  Q
    ||||||||||||||||||| ||||||||||||||||||||  |||||  |||||||| ||||| |||| ||||| ||||||||||||    
T  26025784 ttttcttttgatgttttaggacttcaactatattccaaaatatttgacattttagtatatttaatatt-ttttcccaagtttaccct 26025699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 140 - 222
Target Start/End: Complemental strand, 33109163 - 33109081
Alignment:
Q  140 ttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagttta 222  Q
    ||||||||| ||||||||| ||||||||||||||  ||||   |||||||||||||| ||||| |||| |||||| |||||||    
T  33109163 ttttcttttaatgttttaggacttcaactatattttaaaataattgatgttttagtatatttaatatttttttcttaagttta 33109081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 123 - 159
Target Start/End: Complemental strand, 19257139 - 19257103
Alignment:
Q  123 actactccctccattccttttcttttgatgttttaga 159  Q
    |||||||||||||||||||||||||||||||||||||    
T  19257139 actactccctccattccttttcttttgatgttttaga 19257103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 123 - 158
Target Start/End: Complemental strand, 45591021 - 45590986
Alignment:
Q  123 actactccctccattccttttcttttgatgttttag 158  Q
    |||||||||||||||| |||||||||||||||||||    
T  45591021 actactccctccattcattttcttttgatgttttag 45590986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 158
Target Start/End: Original strand, 8955779 - 8955809
Alignment:
Q  128 tccctccattccttttcttttgatgttttag 158  Q
    |||||||||||||||||||||||||||||||    
T  8955779 tccctccattccttttcttttgatgttttag 8955809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 158
Target Start/End: Complemental strand, 49162365 - 49162332
Alignment:
Q  125 tactccctccattccttttcttttgatgttttag 158  Q
    ||||||||||||||| ||||||||||||||||||    
T  49162365 tactccctccattccctttcttttgatgttttag 49162332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 158
Target Start/End: Complemental strand, 39482138 - 39482106
Alignment:
Q  126 actccctccattccttttcttttgatgttttag 158  Q
    |||||||||||| ||||||||||||||||||||    
T  39482138 actccctccatttcttttcttttgatgttttag 39482106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 125 - 226
Target Start/End: Original strand, 44619 - 44721
Alignment:
Q  125 tactccctccattccttttcttt-tgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttac 223  Q
    |||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||    
T  44619 tactcccttcattccttttctttctgatgtttgagaacttcaactatattccaaaacttttgaggttttagtgaatttattattgttttctcaagtttac 44718  T
Q  224 cct 226  Q
    |||    
T  44719 cct 44721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University