View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18309_low_5 (Length: 698)
Name: NF18309_low_5
Description: NF18309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18309_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 588; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 588; E-Value: 0
Query Start/End: Original strand, 11 - 681
Target Start/End: Original strand, 31063812 - 31064483
Alignment:
| Q |
11 |
cagagacaacagaacctggtgggatagtgaaattgtcgcttagcttcaagttcatcgaagctgcttgttttacaaagagtgttgtagcttgtgctaaagt |
110 |
Q |
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| T |
31063812 |
cagagacaacagaacctggtgggattgtgaaattgtcgcttagcttcaagttcattgaagctgcttgttttacaaagagtgttgtagcttgtgctaaagt |
31063911 |
T |
|
| Q |
111 |
tattccagttgttaatgaagctagccatatggggattatgttaagaacaagctttgtttcttcaactcttgtcactgttgctaatctccatggattgtgt |
210 |
Q |
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| T |
31063912 |
tattccagttgttaatgaagctagccatatggggattatgttaagaacaagctttgtttcttcaactcttgtcactgttgctaatctccatggattgtgt |
31064011 |
T |
|
| Q |
211 |
tttggattaacaggcgtgtcttctaatattgcagccttgtcaagaaacctattcatcatttcaagttatattagacattatttgatttagtagggttttt |
310 |
Q |
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| T |
31064012 |
tttggattaacaggcgtgtcttctaatattgcagccttgtcaagaaacctattcatcatttcaagttatattagacattatttgatttagtagggttttt |
31064111 |
T |
|
| Q |
311 |
ggcnnnnnnnn-aatgtcctaattatcagtttataatagaaaagttgtatagtttagttcacaaagaataagttcaaatttacagttcgatattttctaa |
409 |
Q |
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||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
31064112 |
ggctttgtttttaatgtcctaattatcagtttatactagaaaagttgtatagtttagttcacaaagaataagttcaaatttacagttcgatattttcgaa |
31064211 |
T |
|
| Q |
410 |
aggaagttcaaacactcatgctaatgtggataaattttggccatgcgtcgataaacaaattaagtaagcgcctatagcgtaagtgtttatcgtataaagt |
509 |
Q |
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| T |
31064212 |
aggaagttcaaacactcatgctaatgtggataaattttggccatgcgtcgataaacaaattaagtaagcgtctatagcgtaagtgtttatcatataaaaa |
31064311 |
T |
|
| Q |
510 |
gattactatttatataacaaaatgtaaagtaaaatcaaaatgcttccatataagatataagcagtgttcgttggctgtcgttaagatcatatggaaaaga |
609 |
Q |
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| T |
31064312 |
gattactttttatacaacaaaatgtaaagtaaactcaaaatgcttccatataagatataagcagttttcgttggctgtcgttaagatcatatggaaaaga |
31064411 |
T |
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| Q |
610 |
aagttgaaaacaactcatgacgatgttataaactgtttctataagctcgccgaaatagtcttataaatcttt |
681 |
Q |
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| T |
31064412 |
aagttgaaaacaactcatgacgatgttataaactgtttctataagcttgccgaaatagtcttataaatcttt |
31064483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 18 - 279
Target Start/End: Original strand, 31075199 - 31075461
Alignment:
| Q |
18 |
aacagaacctggtgggatagtgaaattgtcgcttagcttcaagttcatcgaagctgcttgttttacaaagagtgttgtagcttgtgctaaagttattcca |
117 |
Q |
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||||||| |||||||||| |||||| |||| |||| |||||||||||| ||||| |||||||||||||||||||| | ||||||||| | |||||| |
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| T |
31075199 |
aacagaagctggtgggattgtgaaactgtcacttatcttcaagttcattgaagcagcttgttttacaaagagtgtggagccttgtgctacacatattcct |
31075298 |
T |
|
| Q |
118 |
gttgttaatgaagctagccatatggggattatgttaagaacaagctttgtttcttcaactcttgtcactgttgctaatctccatggattgtgttttggat |
217 |
Q |
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| T |
31075299 |
gttgttaatgaagttagccatattggaattacattcagaataagctttgtttcttctactcttgtcactgtagctaatctccatggattgtgtttttgat |
31075398 |
T |
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| Q |
218 |
taacaggcgtgtcttctaatattgcagccttgtcaagaaacctattca-tcatttcaagttat |
279 |
Q |
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| T |
31075399 |
caacatgtgtgtcttctattatagcagccttgtcaagaaacctgttcattaatttcaagttat |
31075461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 132 - 206
Target Start/End: Original strand, 31057851 - 31057925
Alignment:
| Q |
132 |
tagccatatggggattatgttaagaacaagctttgtttcttcaactcttgtcactgttgctaatctccatggatt |
206 |
Q |
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| T |
31057851 |
tagccatatgggaactatgttcaagacaagctttgtctcctccactcttgtcactgtcgttaatctccatggatt |
31057925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 571
Target Start/End: Complemental strand, 37822779 - 37822722
Alignment:
| Q |
514 |
actatttatataacaaaatgtaaagtaaaatcaaaatgcttccatataagatataagc |
571 |
Q |
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| T |
37822779 |
actatttatataacaaaaaataaattaaattcaaactgtttacatataagatataagc |
37822722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 515 - 571
Target Start/End: Complemental strand, 33500601 - 33500545
Alignment:
| Q |
515 |
ctatttatataacaaaatgtaaagtaaaatcaaaatgcttccatataagatataagc |
571 |
Q |
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|||||| |||||||||| ||||||||||||||| || ||| ||||||| ||||||| |
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| T |
33500601 |
ctatttctataacaaaagataaagtaaaatcaaactgtttcaatataagttataagc |
33500545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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