View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18309_low_52 (Length: 231)

Name: NF18309_low_52
Description: NF18309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18309_low_52
NF18309_low_52
[»] chr8 (8 HSPs)
chr8 (19-216)||(3159777-3159974)
chr8 (19-216)||(2889753-2889950)
chr8 (19-216)||(2875398-2875595)
chr8 (19-216)||(3145185-3145382)
chr8 (29-216)||(2796137-2796327)
chr8 (30-108)||(18393581-18393659)
chr8 (30-145)||(27401840-27401955)
chr8 (30-105)||(1226113-1226187)
[»] chr2 (5 HSPs)
chr2 (30-153)||(17651268-17651391)
chr2 (30-105)||(44649997-44650072)
chr2 (30-144)||(4748110-4748224)
chr2 (153-215)||(41848957-41849019)
chr2 (153-213)||(38783772-38783832)
[»] chr1 (5 HSPs)
chr1 (30-219)||(16426366-16426564)
chr1 (30-110)||(3387707-3387787)
chr1 (49-153)||(50127210-50127313)
chr1 (30-145)||(3954967-3955082)
chr1 (30-110)||(48632613-48632693)
[»] scaffold0012 (1 HSPs)
scaffold0012 (30-211)||(209133-209321)
[»] scaffold1723 (1 HSPs)
scaffold1723 (31-212)||(369-557)
[»] chr6 (3 HSPs)
chr6 (30-108)||(2602143-2602221)
chr6 (30-108)||(33234886-33234962)
chr6 (153-212)||(2602031-2602090)
[»] chr7 (8 HSPs)
chr7 (30-93)||(9729906-9729969)
chr7 (49-153)||(27993911-27994015)
chr7 (30-108)||(11809308-11809386)
chr7 (55-98)||(25445505-25445549)
chr7 (49-110)||(32716562-32716623)
chr7 (30-94)||(37338793-37338857)
chr7 (30-108)||(48598363-48598441)
chr7 (30-104)||(6439797-6439871)
[»] chr4 (2 HSPs)
chr4 (161-216)||(32593730-32593785)
chr4 (35-92)||(32593896-32593953)
[»] chr5 (1 HSPs)
chr5 (155-215)||(41815776-41815836)
[»] scaffold0325 (1 HSPs)
scaffold0325 (30-93)||(12947-13010)


Alignment Details
Target: chr8 (Bit Score: 161; Significance: 5e-86; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 19 - 216
Target Start/End: Complemental strand, 3159974 - 3159777
Alignment:
Q  19 acgaagggctataaagttgattacaacgtgtttaaatttttcgatagtagatggataaataaaggccaaatactattgtaacttgttatagaccnnnnnn 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||          
T  3159974 acgaagggctataaagttgattacaacgtgtttaaatttttcgatattagatggataaataaaggccaaatactattgtaacttgttatagacctttttt 3159875  T
Q  119 naatgaaataaattactcaagttagatacatatgtgattctcaatttagatctttcatagataaattagtatacaggtagcagtgtcggtgtcctatg 216  Q
     ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  3159874 taatgaaataaattgctcaagttagatacatatttgattctcaatttagatctttcataaataaattagtatacaggtagcagtgtcggtgtcctatg 3159777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 19 - 216
Target Start/End: Original strand, 2889753 - 2889950
Alignment:
Q  19 acgaagggctataaagttgattacaacgtgtttaaatttttcgatagtagatggataaataaaggccaaatactattgtaacttgttatagaccnnnnnn 118  Q
    |||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||          
T  2889753 acgaagggctataaagttgaatacaacgtttttaaatttttcgatagtagatggataaataaaggccaaatactattgtatcttgttatagacctttttt 2889852  T
Q  119 naatgaaataaattactcaagttagatacatatgtgattctcaatttagatctttcatagataaattagtatacaggtagcagtgtcggtgtcctatg 216  Q
     ||||||||||||| ||||||| ||||||||| |||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  2889853 taatgaaataaattgctcaagtaagatacatacgtgattctcaatttagatctttcataaataaattagtatacaagtagcagtgtcggtgtcctatg 2889950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 19 - 216
Target Start/End: Original strand, 2875398 - 2875595
Alignment:
Q  19 acgaagggctataaagttgattacaacgtgtttaaatttttcgatagtagatggataaataaaggccaaatactattgtaacttgttatagaccnnnnnn 118  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |||          
T  2875398 acgaagggctataaagttgattacaacgtgtttaaatttttcaatagtagatggataaataaaggccaaatactattgtatcttgttataaacctttttt 2875497  T
Q  119 naatgaaataaattactcaagttagatacatatgtgattctcaatttagatctttcatagataaattagtatacaggtagcagtgtcggtgtcctatg 216  Q
     |||||| |||||| ||||||||||||||||||||||||||||||| |||||||||||| ||| |||||||||||||| |||||||||||||||||||    
T  2875498 taatgaactaaattgctcaagttagatacatatgtgattctcaattaagatctttcataaatagattagtatacaggtggcagtgtcggtgtcctatg 2875595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 19 - 216
Target Start/End: Complemental strand, 3145382 - 3145185
Alignment:
Q  19 acgaagggctataaagttgattacaacgtgtttaaatttttcgatagtagatggataaataaaggccaaatactattgtaacttgttatagaccnnnnnn 118  Q
    |||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||          
T  3145382 acgaagggctataaagttgaatacaacgtttttaaatttttcgatagtagatggataaataaaggccaaatactattgtatcttgttatagacctttttt 3145283  T
Q  119 naatgaaataaattactcaagttagatacatatgtgattctcaatttagatctttcatagataaattagtatacaggtagcagtgtcggtgtcctatg 216  Q
     ||||||||||||| ||||||| ||||||||  |||||||||||||||||||||||||| ||||||||||||||| |||| |||||||||||||||||    
T  3145282 taatgaaataaattgctcaagtaagatacatgcgtgattctcaatttagatctttcataaataaattagtatacaagtagtagtgtcggtgtcctatg 3145185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 29 - 216
Target Start/End: Complemental strand, 2796327 - 2796137
Alignment:
Q  29 ataaagttgattacaacgtgtttaaatttttcgatagtagatggataaataaaggccaaatactattgtaacttgttatagacc---nnnnnnnaatgaa 125  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          ||||||    
T  2796327 ataaagttgattacaacgtatttaaatttttcgatagtagatggataaataaaggccaaatactattgtaacttgttatagaccttttttttttaatgaa 2796228  T
Q  126 ataaattactcaagttagatacatatgtgattctcaatttagatctttcatagataaattagtatacaggtagcagtgtcggtgtcctatg 216  Q
    ||||||| |||||||||||| |||||||||||||||||| |||||||||||| ||||||||||||| | |||||||||| |||||||||||    
T  2796227 ataaattgctcaagttagatgcatatgtgattctcaattaagatctttcataaataaattagtatagaagtagcagtgtgggtgtcctatg 2796137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 30 - 108
Target Start/End: Original strand, 18393581 - 18393659
Alignment:
Q  30 taaagttgattacaacgtgtttaaatttttcgatagtagatggataaataaaggccaaatactattgtaacttgttata 108  Q
    |||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||| || |||||||||    
T  18393581 taaagttgattacaacgtttttaaattttttgatagtagatggataaataaaggtcaaatactattttatcttgttata 18393659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 30 - 145
Target Start/End: Complemental strand, 27401955 - 27401840
Alignment:
Q  30 taaagttgattacaacgtgtttaaatttttcgatagtagatggataaataaaggccaaatactattgtaacttgttatagaccnnnnnnnaatgaaataa 129  Q
    |||||||||||||||||| |||   | |||| |||||||||||||||||||||||||||| |||||||| ||||||||| | |       ||||||||||    
T  27401955 taaagttgattacaacgtttttttttctttcaatagtagatggataaataaaggccaaattctattgtatcttgttatataactttttttaatgaaataa 27401856  T
Q  130 attactcaagttagat 145  Q
    ||| ||||||||||||    
T  27401855 attgctcaagttagat 27401840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 105
Target Start/End: Complemental strand, 1226187 - 1226113
Alignment:
Q  30 taaagttgattacaacgtgtttaaatttttcgatagtagatggataaataaaggccaaatactattgtaacttgtt 105  Q
    |||||||||||||||| | ||||||||||| ||||||||||| ||||||||||  |||||||| | ||| ||||||    
T  1226187 taaagttgattacaacatttttaaattttt-gatagtagatgaataaataaagatcaaatactctggtatcttgtt 1226113  T

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Target: chr2 (Bit Score: 75; Significance: 1e-34; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 30 - 153
Target Start/End: Complemental strand, 17651391 - 17651268
Alignment:
Q  30 taaagttgattacaacgtgtttaaatttttcgatagtagatggataaataaaggccaaatactattgtaacttgttatagaccnnnnnnnaatgaaataa 129  Q
    |||||||||||||||||| ||||| |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |       ||||||||||    
T  17651391 taaagttgattacaacgtatttaagtttttcaatagtagatggataaataaaggccaaatattattgtaacttgttatagaacttcttgtaatgaaataa 17651292  T
Q  130 attactcaagttagatacatatgt 153  Q
    ||| |||||||||||| |||||||    
T  17651291 attgctcaagttagatgcatatgt 17651268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 30 - 105
Target Start/End: Original strand, 44649997 - 44650072
Alignment:
Q  30 taaagttgattacaacgtgtttaaatttttcgatagtagatggataaataaaggccaaatactattgtaacttgtt 105  Q
    |||||||||||||||| | ||||| ||||| ||||||||||| ||||||||||| ||||| |||| ||| ||||||    
T  44649997 taaagttgattacaacatttttaacttttttgatagtagatgaataaataaaggtcaaattctatggtatcttgtt 44650072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 30 - 144
Target Start/End: Original strand, 4748110 - 4748224
Alignment:
Q  30 taaagttgattacaacgtgtttaaatttttcgatagtagatggataaataaaggccaaatactattgtaacttgttatagaccnnnnnnnaatgaaataa 129  Q
    |||||||||||||| | | ||||  || ||| |||| ||||| ||||||||||| |||||||||| |||||||||| |||| |       ||||||||||    
T  4748110 taaagttgattacagcatttttagtttgttcaatagaagatgaataaataaaggtcaaatactatcgtaacttgttttagaactttttccaatgaaataa 4748209  T
Q  130 attactcaagttaga 144  Q
    ||| |||||||||||    
T  4748210 attgctcaagttaga 4748224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 153 - 215
Target Start/End: Complemental strand, 41849019 - 41848957
Alignment:
Q  153 tgattctcaatttagatctttcatagataaattagtatacaggtagcagtgtcggtgtcctat 215  Q
    ||||||||||||||||| ||| ||| |||||||| |||| || |||| |||||||||||||||    
T  41849019 tgattctcaatttagatattttataaataaattaatatatagatagcggtgtcggtgtcctat 41848957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 213
Target Start/End: Original strand, 38783772 - 38783832
Alignment:
Q  153 tgattctcaatttagatctttcatagataaattagtatacaggtagcagtgtcggtgtcct 213  Q
    |||||||||||| |||| ||| ||| |||||||| |||| || |||||| |||||||||||    
T  38783772 tgattctcaattcagatattttataaataaattaatatatagatagcagcgtcggtgtcct 38783832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 3e-29; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 30 - 219
Target Start/End: Complemental strand, 16426564 - 16426366
Alignment:
Q  30 taaagttgattacaacgtgtttaaatttttcgatagtagatggataaataaaggccaaatactattgtaacttgttatagaccnnnnnnnaatgaaataa 129  Q
    ||||||||||||||  |  |||||||||||| ||| ||||| |||||||||||||||||||||||||||| |||||||||| |       |||||| |||    
T  16426564 taaagttgattacagtgcatttaaatttttcaataatagatagataaataaaggccaaatactattgtaatttgttatagaacttgttttaatgaagtaa 16426465  T
Q  130 attactcaagttagatacatatg---------tgattctcaatttagatctttcatagataaattagtatacaggtagcagtgtcggtgtcctatgctt 219  Q
    ||| |||||||||||| ||||||         ||||||| |||||| |||||| ||| |||||||| |||| ||||||| ||||| |||||||||||||    
T  16426464 attgctcaagttagatgcatatgtatgtattttgattcttaatttatatcttttataaataaattaatatataggtagcggtgtcagtgtcctatgctt 16426366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 30 - 110
Target Start/End: Complemental strand, 3387787 - 3387707
Alignment:
Q  30 taaagttgattacaacgtgtttaaatttttcgatagtagatggataaataaaggccaaatactattgtaacttgttataga 110  Q
    |||||||||||||||||| ||||||||||||||| ||||||| ||||||||||| ||||||||||| || |||||||||||    
T  3387787 taaagttgattacaacgtttttaaatttttcgatggtagatgaataaataaaggtcaaatactattttatcttgttataga 3387707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 49 - 153
Target Start/End: Original strand, 50127210 - 50127313
Alignment:
Q  49 tttaaatttttcgatagtagatggataaataaaggccaaatactattgtaacttgttatagaccnnnnnnnaatgaaataaattactcaagttagataca 148  Q
    ||||||||||||||||||||||| | |||||||||||||||||||||||| ||||||||||| |       |||||||||||||  ||||||||||| ||    
T  50127210 tttaaatttttcgatagtagatgaa-aaataaaggccaaatactattgtatcttgttatagaactttatttaatgaaataaattgttcaagttagatgca 50127308  T
Q  149 tatgt 153  Q
    |||||    
T  50127309 tatgt 50127313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 30 - 145
Target Start/End: Complemental strand, 3955082 - 3954967
Alignment:
Q  30 taaagttgattacaacgtgtttaaatttttcgatagtagatggataaataaaggccaaatactattgtaacttgttatagaccnnnnnnnaatgaaataa 129  Q
    |||||||||||||||||| ||||  ||||||||||||||||||||||||||||| ||||||| || ||| ||| || |||| |       ||||||||||    
T  3955082 taaagttgattacaacgtttttagctttttcgatagtagatggataaataaaggtcaaatacgatcgtatcttattttagaactttttttaatgaaataa 3954983  T
Q  130 attactcaagttagat 145  Q
    ||| ||||||||||||    
T  3954982 attgctcaagttagat 3954967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 30 - 110
Target Start/End: Original strand, 48632613 - 48632693
Alignment:
Q  30 taaagttgattacaacgtgtttaaatttttcgatagtagatggataaataaaggccaaatactattgtaacttgttataga 110  Q
    |||||||||||||||||| ||||  ||||| ||||||||| | ||||||||||| |||||||||| ||| |||||| ||||    
T  48632613 taaagttgattacaacgtttttagcttttttgatagtagaagaataaataaaggtcaaatactatggtatcttgttttaga 48632693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 55; Significance: 9e-23; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 30 - 211
Target Start/End: Complemental strand, 209321 - 209133
Alignment:
Q  30 taaagttgattacaacgtgtttaaatttttcgatagtagatggataaataaaggccaaatactattgtaacttgttatagaccnnnnnnnaatgaaataa 129  Q
    ||||||| |||||||||| ||||||||||||||| |||||||||||||||||||||||||| | |||||  |||||||||| |       ||||||||||    
T  209321 taaagtttattacaacgtttttaaatttttcgattgtagatggataaataaaggccaaatattgttgtattttgttatagaactttttttaatgaaataa 209222  T
Q  130 attactcaagttagatacatatg---------tgattctcaatttagatctttcatagataaattagtatacaggtagcagtgtcggtgtc 211  Q
    ||| ||  |||||||| ||||||         ||||||||||||||||| ||| ||| |||||||| |||| |  |||||||||| |||||    
T  209221 attgct--agttagatgcatatgtatgtattttgattctcaatttagatattttataaataaattaatatataaatagcagtgtctgtgtc 209133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1723 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold1723
Description:

Target: scaffold1723; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 31 - 212
Target Start/End: Original strand, 369 - 557
Alignment:
Q  31 aaagttgattacaacgtgtttaaatttttcgatagtagatggataaataaaggccaaatactattgtaacttgttatagaccnnnnnnnaatgaaataaa 130  Q
    |||||||||| |||||| ||| |||||| |||||| ||||||||||||||||| |||||||||||||| |||||||||||         ||||||||||     
T  369 aaagttgattccaacgtatttcaatttt-cgatagcagatggataaataaaggtcaaatactattgtatcttgttatagaattttttttaatgaaataat 467  T
Q  131 ttactcaagttagatacata--------tgtgattctcaatttagatctttcatagataaattagtatacaggtagcagtgtcggtgtcc 212  Q
    || |||||||||||| ||||        | ||||||| |||| |||||||| ||| |||||||| |||| || |||| ||||||||||||    
T  468 ttgctcaagttagatgcatattatgtattttgattcttaattaagatcttttataaataaattaatatatagatagcggtgtcggtgtcc 557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 2e-20; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 30 - 108
Target Start/End: Complemental strand, 2602221 - 2602143
Alignment:
Q  30 taaagttgattacaacgtgtttaaatttttcgatagtagatggataaataaaggccaaatactattgtaacttgttata 108  Q
    ||||||||||||||||   ||||||||||||||||||| |||||||||||||||  ||||||||||||| |||||||||    
T  2602221 taaagttgattacaacacatttaaatttttcgatagtacatggataaataaagggtaaatactattgtatcttgttata 2602143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 30 - 108
Target Start/End: Original strand, 33234886 - 33234962
Alignment:
Q  30 taaagttgattacaacgtgtttaaatttttcgatagtagatggataaataaaggccaaatactattgtaacttgttata 108  Q
    |||||||||||||||| | || ||||||| ||||||||||||||||||| |||| |||||||||||||| |||||||||    
T  33234886 taaagttgattacaacattttgaaatttt-cgatagtagatggataaat-aaggtcaaatactattgtatcttgttata 33234962  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 153 - 212
Target Start/End: Complemental strand, 2602090 - 2602031
Alignment:
Q  153 tgattctcaatttagatctttcatagataaattagtatacaggtagcagtgtcggtgtcc 212  Q
    ||||||| ||||||||||||| ||| |||||||| |||| ||||||  ||||||||||||    
T  2602090 tgattcttaatttagatcttttataaataaattaatatataggtagaggtgtcggtgtcc 2602031  T

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Target: chr7 (Bit Score: 48; Significance: 1e-18; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 30 - 93
Target Start/End: Original strand, 9729906 - 9729969
Alignment:
Q  30 taaagttgattacaacgtgtttaaatttttcgatagtagatggataaataaaggccaaatacta 93  Q
    |||||||||||||||||  |||||||||||||||||||| ||||||||||||| ||||||||||    
T  9729906 taaagttgattacaacgcatttaaatttttcgatagtaggtggataaataaagtccaaatacta 9729969  T

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Target: chr7; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 49 - 153
Target Start/End: Complemental strand, 27994015 - 27993911
Alignment:
Q  49 tttaaatttttcgatagtagatggataaataaaggccaaatactattgtaacttgttatagaccnnnnnnnaatgaaataaattactcaagttagataca 148  Q
    ||||||||||||||| ||||||||||||||||||  ||| | |||||||| ||||||||||| |       ||||||||||||| ||||||||| || ||    
T  27994015 tttaaatttttcgatggtagatggataaataaagatcaattgctattgtatcttgttatagaactttatttaatgaaataaattgctcaagttaaatgca 27993916  T
Q  149 tatgt 153  Q
    |||||    
T  27993915 tatgt 27993911  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 30 - 108
Target Start/End: Original strand, 11809308 - 11809386
Alignment:
Q  30 taaagttgattacaacgtgtttaaatttttcgatagtagatggataaataaaggccaaatactattgtaacttgttata 108  Q
    |||| ||||||||||| | ||||||||||| ||  ||||||| |  ||||||||||||||||||||||| |||||||||    
T  11809308 taaatttgattacaacctttttaaattttttgacggtagatgaagtaataaaggccaaatactattgtatcttgttata 11809386  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 55 - 98
Target Start/End: Complemental strand, 25445549 - 25445505
Alignment:
Q  55 tttttcgatagtagatggataaat-aaaggccaaatactattgta 98  Q
    |||||||||||||||||||||||| ||||||||||||||||||||    
T  25445549 tttttcgatagtagatggataaataaaaggccaaatactattgta 25445505  T

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Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 110
Target Start/End: Original strand, 32716562 - 32716623
Alignment:
Q  49 tttaaatttttcgatagtagatggataaataaaggccaaatactattgtaacttgttataga 110  Q
    ||||| |||||||||||| |||| ||||||||||  |||||||||||||| |||||| ||||    
T  32716562 tttaactttttcgatagtggatgaataaataaagatcaaatactattgtatcttgttttaga 32716623  T

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Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 94
Target Start/End: Original strand, 37338793 - 37338857
Alignment:
Q  30 taaagttgattacaacgtgtttaaatttttcgatagtagatggataaataaaggccaaatactat 94  Q
    |||||||||| | ||| | ||||| ||||| ||||||||||| ||||||||||| ||||||||||    
T  37338793 taaagttgataataacatttttaacttttttgatagtagatgaataaataaaggtcaaatactat 37338857  T

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Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 108
Target Start/End: Complemental strand, 48598441 - 48598363
Alignment:
Q  30 taaagttgattacaacgtgtttaaatttttcgatag-tagatggataaataaaggccaaatactattgtaacttgttata 108  Q
    |||||||| ||||||||| ||| ||||||| ||||  ||| |||||||||||||| |||||||||||||| | |||||||    
T  48598441 taaagttggttacaacgttttttaattttttgatatatag-tggataaataaaggtcaaatactattgtatcgtgttata 48598363  T

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Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 104
Target Start/End: Complemental strand, 6439871 - 6439797
Alignment:
Q  30 taaagttgattacaacgtgtttaaatttttcgatagtagatggataaataaaggccaaatactattgtaacttgt 104  Q
    |||||||||||||||| | ||||  |||||||||||||| || ||||||| | | |||||||||| ||| |||||    
T  6439871 taaagttgattacaacatttttatctttttcgatagtagttgaataaatagatgtcaaatactatcgtatcttgt 6439797  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 161 - 216
Target Start/End: Complemental strand, 32593785 - 32593730
Alignment:
Q  161 aatttagatctttcatagataaattagtatacaggtagcagtgtcggtgtcctatg 216  Q
    |||||||||| || ||| ||||||||||||||||||||| ||||| ||||||||||    
T  32593785 aatttagatcatttataaataaattagtatacaggtagcggtgtcagtgtcctatg 32593730  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 35 - 92
Target Start/End: Complemental strand, 32593953 - 32593896
Alignment:
Q  35 ttgattacaacgtgtttaaatttttcgatagtagatggataaataaaggccaaatact 92  Q
    |||||||||||   ||||||||||| || ||||||||||||||||||||| |||||||    
T  32593953 ttgattacaacacatttaaattttttgagagtagatggataaataaaggctaaatact 32593896  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 215
Target Start/End: Original strand, 41815776 - 41815836
Alignment:
Q  155 attctcaatttagatctttcatagataaattagtatacaggtagcagtgtcggtgtcctat 215  Q
    ||||||||||| ||||||| ||| |||||||| |||| | ||||| |||||||||||||||    
T  41815776 attctcaatttggatcttttataaataaattaatatatatgtagcggtgtcggtgtcctat 41815836  T

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Target: scaffold0325 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0325
Description:

Target: scaffold0325; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 93
Target Start/End: Complemental strand, 13010 - 12947
Alignment:
Q  30 taaagttgattacaacgtgtttaaatttttcgatagtagatggataaataaaggccaaatacta 93  Q
    ||||||||||||||| || ||||  ||||| ||||||||||| ||||||||| | |||||||||    
T  13010 taaagttgattacaatgtttttagcttttttgatagtagatgaataaataaatgtcaaatacta 12947  T

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