View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18309_low_53 (Length: 221)
Name: NF18309_low_53
Description: NF18309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18309_low_53 |
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Alignment Details
Target: chr2 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 22364714 - 22364509
Alignment:
| Q |
1 |
ccttcaaccaatttaactcccaaacccaaaagtctccttcaaaaccacccactttacacaccaactaatgaaaaactctcacttcaattcaaagaaaaaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22364714 |
ccttcaaccaatttaactcccaaacccaaaagtctccttcaaaaccatccactttacacaccaactaatgaaaaactctcacttcaattcaaagaaaaaa |
22364615 |
T |
|
| Q |
101 |
ttctttgtcttgaagttatgggcattgattcaggtaaagcactctctcaaaaccctaaccttcatacagctaccttagaatccattcattccattatcac |
200 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22364614 |
ttctctgtcttgaagttatgggcattgattcaggtaaagcactctctcaaaaccctaaccttcatacagctaccttagaatccattcattccattatcac |
22364515 |
T |
|
| Q |
201 |
atttct |
206 |
Q |
| |
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|||||| |
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|
| T |
22364514 |
atttct |
22364509 |
T |
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