View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18309_low_6 (Length: 642)

Name: NF18309_low_6
Description: NF18309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18309_low_6
NF18309_low_6
[»] chr4 (1 HSPs)
chr4 (1-624)||(828645-829269)


Alignment Details
Target: chr4 (Bit Score: 569; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 569; E-Value: 0
Query Start/End: Original strand, 1 - 624
Target Start/End: Original strand, 828645 - 829269
Alignment:
Q  1 tattttttgaatgacaaatgttaacaattatctttgacccaatgtagagattggggagtccgtccatgattgatccgatgaagggggattggggatc-tc 99  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  828645 tattttttgaatgacaaatgttaacaattatctttgacccaatgaagagattggggagtccgtccatgattgatccgatgaagggggattggggatcctc 828744  T
Q  100 tcatgatgcctcctgataatgagcactttcacttccacaacgactatagactttcgggaaggagtttcgtctcagtcagacgacctcttcctttttggtg 199  Q
    ||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||    
T  828745 tcatgattcctcctgataatgagcactttcacttccacaactactatagactttcgagaaggagtctcgtctcagtcagacgacctctttctttttggtg 828844  T
Q  200 attcactttgcccagacaagttttgaggttatcatttatatttctttctgtcctcgcgggagttttaatttttggcgaaccttcttagttttcctttttt 299  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  828845 attcactttgcccagacaagttttgaggttagcatttatatttctttctgtcctcgcgggagttttaatttttggcgaaccttcttagttttcccttttt 828944  T
Q  300 gatgagctcctcaagggtgtcttttaggtggaagaaatatgggtttaacaagtctttgatttggatcattattgacattttttaatgaatcaaactacca 399  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  828945 gatgagctcctcaagggtgtcttttaggtggaagaaatatgggtttaacaagtctttgattcggatcattattgacattttttaatgaatcaaactacca 829044  T
Q  400 attttgacatttttgtataaattagacaggatgaccttttataataggatgatcttttctaaataaataaaaaacaatgtatggatcttgcaactcagta 499  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  829045 attttgacatttttgtataaattagacaggatgaccttttataataggatgatattttctaaataaataaaaaacaatgtatggatcttgcaactcagta 829144  T
Q  500 gagcaaggcaaaaccttgaaaagcacatagccttcctagcttgccctctgaatcaatctagcacaacaactttgatacaactccatacatcacaaatgaa 599  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  829145 gagcaaggcaaaaccttgaaaaacacatagccttcctagcttgccctctgaatcaatctagcacaacaactttgatacaactccatacatcacaaatgaa 829244  T
Q  600 attaagaaaagtagacaatggtact 624  Q
    ||||||||||| |||||||||||||    
T  829245 attaagaaaaggagacaatggtact 829269  T

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