View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18309_low_8 (Length: 597)
Name: NF18309_low_8
Description: NF18309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18309_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 537; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 537; E-Value: 0
Query Start/End: Original strand, 1 - 592
Target Start/End: Complemental strand, 26952912 - 26952321
Alignment:
| Q |
1 |
atgtgcaggtaatttatcttctaattttataaacatcaatttaattgaagattgtaagtgatgttttataagttcaagaaattatactacatttcgtaga |
100 |
Q |
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| T |
26952912 |
atgtgcaggtaatttatcttctaattttataaa-atcaatttaattgaagattgtaagtaatgttttataagttcaagaaattatactacattttgtaga |
26952814 |
T |
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| Q |
101 |
gggatggaagtaggtttcattttctgttcttgtgacagtaaataaagattataccatgacaacattttttaaccaaggaatacaggcttgattgaaaata |
200 |
Q |
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| T |
26952813 |
gggatggaagtaggtttcattttctgttcttgtaacagtaaataaagattataccatgacaacattttttaaccaaggaatacaggcttgattgaaaata |
26952714 |
T |
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| Q |
201 |
aaattctgcttttatctcgttattatttatataccttgaacatgatcaagattcaagagaaggaatcatctggttgatttagttatgatgagtttttctt |
300 |
Q |
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| T |
26952713 |
aaattatgcttttgtctcgttattatttatataccttgaacatgatcaagattcaagagaaggaatcatctggttgatttagttatgatgagtttttctt |
26952614 |
T |
|
| Q |
301 |
tttggtgttagattcgagccctgtcgtggcctgctttgctcgttggatgggttgctcagagtgcaaggtgcaaatatgctatttatttcacatatgtgat |
400 |
Q |
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| T |
26952613 |
tttggtgttagattcgagccttgtcgtggcctgctttactcgttggatgggttgctcagagtgcaaggtgcaaatatgctatttatttcacatatgtgat |
26952514 |
T |
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| Q |
401 |
tttctgaagtgagtggttgttaatttttatgtcaaatatgaggtggtgcccttaatattctattttgtgttgctgttaatatcaattatgatgaaatagg |
500 |
Q |
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| T |
26952513 |
tttctgaagtgagtggttgttaatttttatgtcaaatatgaggtagtgcccttaatattctattttgtgttgctgttaatatcaattatgatgaaatagg |
26952414 |
T |
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| Q |
501 |
gttcagtttggtgaaag-ttgtcttagttttggataaagaactctagactaaaactttgcacatggttacatttctcggtctcctttgctact |
592 |
Q |
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| T |
26952413 |
gttcagttcggtgaaagtttgtcttagttttggataaagaactctagactaaaactttgcacatggttacatttctcggtctcctttgttact |
26952321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 299 - 436
Target Start/End: Complemental strand, 26944846 - 26944709
Alignment:
| Q |
299 |
tttttggtgttagattcgagccctgtcgtggcctgctttgctcgttggatgggttgctcagagtgcaaggtgcaaatatgctatttatttcacatatgtg |
398 |
Q |
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| T |
26944846 |
tttttgttgttagattcgaggattggcgtggcctgctttacttgttggatgggtcgcacagagtgcaaggtgcaaatttactatttattactaatatgtg |
26944747 |
T |
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| Q |
399 |
attttctgaagtgagtggttgttaatttttatgtcaaa |
436 |
Q |
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| T |
26944746 |
attctctgatgtaagaggttgaaagtttttatgtcaaa |
26944709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 300 - 384
Target Start/End: Original strand, 26977793 - 26977877
Alignment:
| Q |
300 |
ttttggtgttagattcgagccctgtcgtggcctgctttgctcgttggatgggttgctcagagtgcaaggtgcaaatatgctattt |
384 |
Q |
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| T |
26977793 |
ttttggtgttagattcgaggattggcatggccttctttacttgttggattggttgctcagagtgcaaggtgcaaatatactattt |
26977877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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