View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1830_high_1 (Length: 692)
Name: NF1830_high_1
Description: NF1830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1830_high_1 |
 | |
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| [»] scaffold1254 (1 HSPs) |
| | |
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| [»] scaffold0419 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 580; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 580; E-Value: 0
Query Start/End: Original strand, 1 - 661
Target Start/End: Original strand, 43547570 - 43548234
Alignment:
| Q |
1 |
tgggggaatgttctttgtgttggcaggaattatggtggcggctaccggtttcttttatgtttctatgccagagaccaaaggcaagacattagaagaaatg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43547570 |
tgggggaatgttctttgtgttggcaggaattatggtggcggctaccggtttctattatgtttctatgccagagaccaaaggcaagacattagaagaaatg |
43547669 |
T |
|
| Q |
101 |
gaaactctctttgttgaggatgatgatgataataataacaataataatgagaaacagggtagtcacgataagggtgtggatgaaggagttgtttagggga |
200 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
43547670 |
gaaactctcttcgttgaggatgatgatgataataataacaataataatgagaaacagggtagtcacgataagggtgtggataaaggagttgtttagggga |
43547769 |
T |
|
| Q |
201 |
agaaaatgtgttggtaagtttgctctttgtacatgttatataatcaatctatgtcagttactagcaattgcatatttgaatttagttcatttatagctag |
300 |
Q |
| |
|
||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43547770 |
agaaa-tgtgttggtaagtatgctctttgtacatgttatataatcaatctatgtcagttactagcaattgcatatttgaatttagttcatttatagctag |
43547868 |
T |
|
| Q |
301 |
accaattgtatttgtggattgaagcatttacgaaattgttcttgaaactaccaatgttatgagaaggcggcataagcaattgaaccatcataaattattt |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
43547869 |
accaattgtatttgtggattgaagcatttacgaaattgttcttgaaactaccaatgttatgagaaggtggcataagcaattgaaccatcataaattattt |
43547968 |
T |
|
| Q |
401 |
tataggtctcattgcagttcgtcctcgtatgactcatgcttcggtgcttgtagatctacatcaa-----nnnnnnnnnncggtgcttgtaatctaatggt |
495 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |
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|
| T |
43547969 |
tataggtctcattgcagttcgtcctcgtatgactcatgcttcggtgcttgtagatctacatcgatttttttttttttttcggtgcttgtaatctaatggt |
43548068 |
T |
|
| Q |
496 |
tgaatcatggtcttgtttcttggaagttaaaaaacagatagatgaaattgtcttgagttaactaagaatatgttattcattatttctcatatcttcagag |
595 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43548069 |
tgaatcatggtcttgtttcttggaagttaaaaaacagatagatgaaattgtcttgagtaaactaagaatatgttattcattatttctcatatcttcagag |
43548168 |
T |
|
| Q |
596 |
aagacaatcgttgtgccgacaacattgcttccgttggactccaaaatatatgatttgtttggtggt |
661 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43548169 |
aagacaatcgttgtgccgacaacattgcttccgttggactccaaaatatatgatttgtttggtggt |
43548234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 209 - 661
Target Start/End: Complemental strand, 43550482 - 43550025
Alignment:
| Q |
209 |
tgttggtaagtttgctctttgtacatgttatataatcaatctatgtcagttactagcaattgcatatttgaatttagttcatttatagctagaccaattg |
308 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43550482 |
tgttcgtaagtttgctctttgtacatgttatataatcaatctatgtcagttactagcaattgcatatttgaatttagttcatttatagctagaccaattg |
43550383 |
T |
|
| Q |
309 |
tatttgtggattgaagcatttacgaaattgttcttgaaactaccaatgttatgagaaggcggcataagcaattgaaccatcataaattattttataggtc |
408 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43550382 |
tatttgtggattgaagcatttacgaaattgttcttgaaactaccaatgttatgagaaggtggcataagcaattgaaccatcataaattattttataggtc |
43550283 |
T |
|
| Q |
409 |
tcattgcagttcgtcctcgtatgactcatgcttcggtgcttgtagatctacatcaa-----nnnnnnnnnncggtgcttgtaatctaatggttgaatcat |
503 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |
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|
| T |
43550282 |
tcattgcagttcgtcctcgtatgactcatgcttcggtgcttgtagatctacatcgatttttttttttttttcggtgcttgtaatctaatggttgaatcat |
43550183 |
T |
|
| Q |
504 |
ggtcttgtttcttggaagttaaaaaacagatagatgaaattgtcttgagttaactaagaatatgttattcattatttctcatatcttcagagaagacaat |
603 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43550182 |
ggtcttgtttcttggaagttaaaaaacagatagatgaaattgtcttgagtaaactaagaatatgttattcattatttctcatatcttcagagaagacaat |
43550083 |
T |
|
| Q |
604 |
cgttgtgccgacaacattgcttccgttggactccaaaatatatgatttgtttggtggt |
661 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43550082 |
cgttgtgccgacaacattgcttccgttggactccaaaatatatgatttgtttggtggt |
43550025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 548 - 597
Target Start/End: Original strand, 43458747 - 43458796
Alignment:
| Q |
548 |
ttgagttaactaagaatatgttattcattatttctcatatcttcagagaa |
597 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||| |||||| |
|
|
| T |
43458747 |
ttgagttaactaagaatattagattcattatttctcatatctttagagaa |
43458796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 541 - 601
Target Start/End: Original strand, 43578344 - 43578404
Alignment:
| Q |
541 |
aattgtcttgagttaactaagaa-tatgttattcattatttctcatatcttcagagaagaca |
601 |
Q |
| |
|
||||||||||||||||| ||||| ||||| ||| |||||||||||||||||| || |||||| |
|
|
| T |
43578344 |
aattgtcttgagttaac-aagaattatgtgatttattatttctcatatcttcggacaagaca |
43578404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 550 - 625
Target Start/End: Original strand, 8859844 - 8859919
Alignment:
| Q |
550 |
gagttaactaagaatatgttattcattatttctcatatcttcagagaagacaatcgttgtgccgacaacattgctt |
625 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||| |||||| |||||||||||| |||| ||||||| |
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|
| T |
8859844 |
gagttaactaagaatatgtgtttcattatttctcatatcttaagagaatgcaatcgttgtgcaaacaagattgctt |
8859919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 548 - 611
Target Start/End: Original strand, 4605460 - 4605523
Alignment:
| Q |
548 |
ttgagttaactaagaatatgttattcattatttctcatatcttcagagaagacaatcgttgtgc |
611 |
Q |
| |
|
|||| |||||||| ||||||| ||||||||||||||||||||||| | |||||||| ||||||| |
|
|
| T |
4605460 |
ttgaattaactaaaaatatgtgattcattatttctcatatcttcataaaagacaattgttgtgc |
4605523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 553 - 622
Target Start/End: Original strand, 28838469 - 28838538
Alignment:
| Q |
553 |
ttaactaagaatatgttattcattatttctcatatcttcagagaagacaatcgttgtgccgacaacattg |
622 |
Q |
| |
|
|||||||||||| || ||||||||||||||||||||| | |||||| ||||||||||| ||||| |||| |
|
|
| T |
28838469 |
ttaactaagaatttgcgattcattatttctcatatctttatagaagataatcgttgtgcagacaagattg |
28838538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 497 - 603
Target Start/End: Original strand, 8794642 - 8794747
Alignment:
| Q |
497 |
gaatcatggtcttgtttcttggaagttaaaaaacagatagatgaaattgtcttgagttaactaagaatatgttattcattatttctcatatcttcagaga |
596 |
Q |
| |
|
|||||| |||||||||||||||| |||| |||||||| || ||||||| ||| |||||||||||||||||| |||||| |||| | ||||| ||||| |
|
|
| T |
8794642 |
gaatcagggtcttgtttcttggagattaagaaacagat-gacaaaattgtgttgtgttaactaagaatatgttcttcattgtttcctaaatctttagaga |
8794740 |
T |
|
| Q |
597 |
agacaat |
603 |
Q |
| |
|
| ||||| |
|
|
| T |
8794741 |
atacaat |
8794747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 497 - 599
Target Start/End: Original strand, 32954976 - 32955077
Alignment:
| Q |
497 |
gaatcatggtcttgtttcttggaagttaaaaaacagatagatgaaattgtcttgagttaactaagaatatgttattcattatttctcatatcttcagaga |
596 |
Q |
| |
|
|||||||||||||||| |||| | ||||| ||||| || | |||| || | || |||||||||||||||| ||||||||| ||||| |||||| |||| |
|
|
| T |
32954976 |
gaatcatggtcttgttccttgaaggttaagaaacatatggttgaa-ttatgttaagttaactaagaatattcaattcattatctctcaaatcttcggaga |
32955074 |
T |
|
| Q |
597 |
aga |
599 |
Q |
| |
|
||| |
|
|
| T |
32955075 |
aga |
32955077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1254 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold1254
Description:
Target: scaffold1254; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 553 - 622
Target Start/End: Complemental strand, 2194 - 2125
Alignment:
| Q |
553 |
ttaactaagaatatgttattcattatttctcatatcttcagagaagacaatcgttgtgccgacaacattg |
622 |
Q |
| |
|
|||||||||||| || ||||||||||||||||||||| | |||||| ||||||||||| ||||| |||| |
|
|
| T |
2194 |
ttaactaagaatttgcgattcattatttctcatatctttatagaagataatcgttgtgcagacaagattg |
2125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0419 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0419
Description:
Target: scaffold0419; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 553 - 622
Target Start/End: Original strand, 5435 - 5504
Alignment:
| Q |
553 |
ttaactaagaatatgttattcattatttctcatatcttcagagaagacaatcgttgtgccgacaacattg |
622 |
Q |
| |
|
|||||||||||| || ||||||||||||||||||||| | |||||| ||||||||||| ||||| |||| |
|
|
| T |
5435 |
ttaactaagaatttgcgattcattatttctcatatctttatagaagagaatcgttgtgcagacaagattg |
5504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 502 - 627
Target Start/End: Complemental strand, 25836607 - 25836484
Alignment:
| Q |
502 |
atggtcttgtttcttggaagttaaaaaacagatagatgaaattgtcttgagttaactaagaatatgttattcattatttctcatatcttcagagaagaca |
601 |
Q |
| |
|
||||||||||| ||| ||||||||||| ||| || ||| |||| |||||||| ||||||||||| |||| ||||| || ||||||||||||| | |
|
|
| T |
25836607 |
atggtcttgttcctttgaagttaaaaa-caggcagttgag-ttgtgttgagttacctaagaatatgcgtttcactattttgcacatcttcagagaaggaa |
25836510 |
T |
|
| Q |
602 |
atcgttgtgccgacaacattgcttcc |
627 |
Q |
| |
|
|||||||||| ||||| ||||||||| |
|
|
| T |
25836509 |
atcgttgtgcagacaagattgcttcc |
25836484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 553 - 611
Target Start/End: Complemental strand, 38531038 - 38530980
Alignment:
| Q |
553 |
ttaactaagaatatgttattcattatttctcatatcttcagagaagacaatcgttgtgc |
611 |
Q |
| |
|
|||||||| |||| || ||||||||| ||||||||||||||| || |||| |||||||| |
|
|
| T |
38531038 |
ttaactaaaaatacgtgattcattatatctcatatcttcagaaaatacaaccgttgtgc |
38530980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 571 - 617
Target Start/End: Complemental strand, 16560582 - 16560536
Alignment:
| Q |
571 |
ttcattatttctcatatcttcagagaagacaatcgttgtgccgacaa |
617 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |||| || ||||| |
|
|
| T |
16560582 |
ttcattatttctcatatcttgagagaagacaattgttgcgcagacaa |
16560536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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