View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1830_high_20 (Length: 228)
Name: NF1830_high_20
Description: NF1830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1830_high_20 |
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Alignment Details
Target: chr4 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 38 - 213
Target Start/End: Original strand, 51346480 - 51346655
Alignment:
| Q |
38 |
gaagagtacactcccaaatctcaagtcaatatcgtcaggccaacccaagtggattcattttgaaaaaagttaattttgagattgaaatcaattctaaaac |
137 |
Q |
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| T |
51346480 |
gaagagcacactctcaaatctcaagtcaataccgtcaggccaacccaagtggattccttttggaaaaagttaattttgagattgaaatcaattctaaaac |
51346579 |
T |
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| Q |
138 |
caaaagctaaacattagcaatttatggtcaaatcatcgtatataagtaaaccaaacataattctgtaagttataaa |
213 |
Q |
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| T |
51346580 |
cagaagctaaacattagcaatttatggtcaaatcatcgtatataagtaaaccaaacataattcagtaagttataaa |
51346655 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 95
Target Start/End: Original strand, 43927595 - 43927650
Alignment:
| Q |
40 |
agagtacactcccaaatctcaagtcaatatcgtcaggccaacccaagtggattcat |
95 |
Q |
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| T |
43927595 |
agagtgcactcccaaatctcaagtcaatatcactaagccaacccaagtggattcat |
43927650 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 92
Target Start/End: Complemental strand, 9964492 - 9964438
Alignment:
| Q |
38 |
gaagagtacactcccaaatctcaagtcaatatcgtcaggccaacccaagtggatt |
92 |
Q |
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| T |
9964492 |
gaagagcacactcccagatcccaagtcaataacatcaggctaacccaagtggatt |
9964438 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 89
Target Start/End: Complemental strand, 16893445 - 16893397
Alignment:
| Q |
41 |
gagtacactcccaaatctcaagtcaatatcgtcaggccaacccaagtgg |
89 |
Q |
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| T |
16893445 |
gagtacactcccaaatctcaagccaataccaacaggtcaacccaagtgg |
16893397 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 89
Target Start/End: Complemental strand, 51814541 - 51814497
Alignment:
| Q |
45 |
acactcccaaatctcaagtcaatatcgtcaggccaacccaagtgg |
89 |
Q |
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| T |
51814541 |
acactctcagatctcaagtcaataccatcaggccaacccaagtgg |
51814497 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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