View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1830_high_21 (Length: 223)

Name: NF1830_high_21
Description: NF1830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1830_high_21
NF1830_high_21
[»] chr4 (20 HSPs)
chr4 (14-206)||(4186050-4186242)
chr4 (13-206)||(50398602-50398794)
chr4 (88-135)||(27026459-27026506)
chr4 (13-206)||(24629041-24629236)
chr4 (13-180)||(12692063-12692229)
chr4 (117-204)||(31817565-31817652)
chr4 (148-206)||(23942984-23943042)
chr4 (87-186)||(27029182-27029281)
chr4 (148-206)||(14571895-14571953)
chr4 (13-135)||(21220395-21220516)
chr4 (13-135)||(24629497-24629618)
chr4 (148-189)||(15306270-15306311)
chr4 (148-206)||(4127636-4127694)
chr4 (69-203)||(17029217-17029350)
chr4 (69-135)||(33987191-33987256)
chr4 (66-135)||(24271669-24271738)
chr4 (148-189)||(35871553-35871594)
chr4 (148-189)||(44471499-44471540)
chr4 (13-181)||(4185623-4185791)
chr4 (13-105)||(43929027-43929119)
[»] chr8 (9 HSPs)
chr8 (13-206)||(32292281-32292473)
chr8 (13-206)||(10844767-10844959)
chr8 (13-180)||(22026289-22026455)
chr8 (66-204)||(22548672-22548809)
chr8 (13-184)||(27925805-27925975)
chr8 (148-189)||(34309119-34309160)
chr8 (148-189)||(21316289-21316330)
chr8 (148-189)||(25147461-25147502)
chr8 (148-188)||(12100618-12100658)
[»] chr1 (16 HSPs)
chr1 (13-206)||(20054150-20054342)
chr1 (13-206)||(20054606-20054798)
chr1 (13-206)||(20055062-20055254)
chr1 (13-206)||(20055518-20055710)
chr1 (13-206)||(20055974-20056166)
chr1 (13-206)||(20056430-20056622)
chr1 (13-206)||(20057333-20057525)
chr1 (66-206)||(20056930-20057069)
chr1 (13-135)||(20845731-20845852)
chr1 (112-206)||(43057232-43057326)
chr1 (13-183)||(38340813-38340982)
chr1 (13-135)||(43057593-43057714)
chr1 (13-135)||(52250161-52250282)
chr1 (148-204)||(20061371-20061427)
chr1 (172-206)||(50002479-50002513)
chr1 (150-206)||(31822869-31822925)
[»] chr7 (9 HSPs)
chr7 (13-206)||(34405661-34405853)
chr7 (66-206)||(2189028-2189167)
chr7 (13-206)||(6747668-6747860)
chr7 (148-206)||(2189484-2189542)
chr7 (117-206)||(35474294-35474383)
chr7 (13-206)||(43233297-43233489)
chr7 (148-204)||(13124881-13124937)
chr7 (13-135)||(2193211-2193332)
chr7 (148-189)||(9124884-9124925)
[»] chr5 (8 HSPs)
chr5 (13-206)||(21886216-21886408)
chr5 (13-206)||(34371952-34372144)
chr5 (13-181)||(34867699-34867866)
chr5 (148-206)||(22556877-22556935)
chr5 (171-206)||(3886828-3886863)
chr5 (13-180)||(34371522-34371688)
chr5 (148-189)||(2474330-2474371)
chr5 (148-189)||(3887237-3887278)
[»] scaffold0333 (1 HSPs)
scaffold0333 (53-204)||(4902-5052)
[»] chr2 (6 HSPs)
chr2 (13-206)||(33174842-33175034)
chr2 (13-135)||(41754244-41754365)
chr2 (13-180)||(25338067-25338233)
chr2 (13-135)||(25434126-25434247)
chr2 (148-206)||(38899116-38899174)
chr2 (148-189)||(30966615-30966656)
[»] scaffold0002 (1 HSPs)
scaffold0002 (13-206)||(154642-154833)
[»] chr3 (9 HSPs)
chr3 (13-206)||(13150169-13150360)
chr3 (13-134)||(29224280-29224400)
chr3 (110-206)||(39653504-39653600)
chr3 (148-206)||(16811265-16811323)
chr3 (13-135)||(39653119-39653240)
chr3 (13-169)||(14813870-14814025)
chr3 (148-204)||(25238875-25238931)
chr3 (148-186)||(41473925-41473963)
chr3 (155-204)||(25802767-25802816)
[»] chr6 (13 HSPs)
chr6 (13-180)||(20850231-20850397)
chr6 (13-194)||(21311867-21312047)
chr6 (11-107)||(31821760-31821855)
chr6 (13-140)||(20896758-20896884)
chr6 (148-189)||(9351988-9352029)
chr6 (148-189)||(17731293-17731334)
chr6 (14-135)||(20126253-20126373)
chr6 (148-206)||(7912218-7912276)
chr6 (155-189)||(13191700-13191734)
chr6 (13-178)||(3652398-3652562)
chr6 (148-189)||(13492714-13492755)
chr6 (148-189)||(16519894-16519935)
chr6 (71-135)||(32292839-32292903)
[»] scaffold0243 (1 HSPs)
scaffold0243 (13-180)||(1130-1296)
[»] scaffold0005 (1 HSPs)
scaffold0005 (148-206)||(245423-245481)
[»] scaffold0442 (1 HSPs)
scaffold0442 (163-206)||(2388-2431)
[»] scaffold0088 (1 HSPs)
scaffold0088 (13-135)||(23628-23749)
[»] scaffold0024 (1 HSPs)
scaffold0024 (148-189)||(105645-105686)
[»] scaffold0020 (1 HSPs)
scaffold0020 (148-189)||(107643-107684)
[»] scaffold0557 (1 HSPs)
scaffold0557 (158-206)||(634-682)


Alignment Details
Target: chr4 (Bit Score: 153; Significance: 3e-81; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 14 - 206
Target Start/End: Complemental strand, 4186242 - 4186050
Alignment:
Q  14 attcttataagcattcctttgaccatttagtctcatatgtgcatggccttacgaaccctctcattccagtgtgaattcggtttgtctaaaagctaccagg 113  Q
    |||||||||||||||||||| | |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |    
T  4186242 attcttataagcattcctttaaacatttagtctcatacgtgcatggccttacgaaccctctcattccagtgtgaattcggttcgtctaaaagctaccatg 4186143  T
Q  114 agtcgctcattgtcatgccttgcgcaattatgatcactcctcgccctcatcagcctcaggtgttacatgcccaccagtttccgcttggttcgt 206  Q
    |||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||  ||||||||||||||||||    
T  4186142 agtcgctcattgtcatgccttgcgcaattatgatcactcctctctctcgtcagcctcaggtgttacatgcccattagtttccgcttggttcgt 4186050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 13 - 206
Target Start/End: Original strand, 50398602 - 50398794
Alignment:
Q  13 aattcttataagcattcctttgaccatttagtctcatatgtgcatggccttacgaaccctctcattccagtgtgaattcggtttgtctaaaagctaccag 112  Q
    ||||||||||||| ||||||  ||||| |||||  |||  | || ||||| | || ||||||||||||  ||||| ||||| ||||||| ||| |  | |    
T  50398602 aattcttataagccttccttcaaccatgtagtcctatacctacacggcctcaggatccctctcattccgatgtga-ttcggcttgtctagaagttgtcgg 50398700  T
Q  113 gagtcgctcattgtcatgccttgcgcaattatgatcactcctcgccctcatcagcctcaggtgttacatgcccaccagtttccgcttggttcgt 206  Q
    ||| ||||||||||||||||||| |||     || |||||| ||||||| |||||||  ||||||||||||||||||| |||||||| ||||||    
T  50398701 gagccgctcattgtcatgccttgtgcaccggcgaccactccccgccctcgtcagccttgggtgttacatgcccaccagcttccgcttcgttcgt 50398794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 88 - 135
Target Start/End: Complemental strand, 27026506 - 27026459
Alignment:
Q  88 attcggtttgtctaaaagctaccaggagtcgctcattgtcatgccttg 135  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||    
T  27026506 attcggtttgcctaaaagctaccaggagtcgctcattgtcatgccttg 27026459  T

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Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 13 - 206
Target Start/End: Original strand, 24629041 - 24629236
Alignment:
Q  13 aattcttataagc---attcctttgaccatttagtctcatatgtgcatggccttacgaaccctctcattccagtgtgaattcggtttgtctaaaagctac 109  Q
    |||||||||||||   |||||||| |||||  |||| ||||  | || ||||| | ||||||||||||||| |||||| |||||||  || | |||||      
T  24629041 aattcttataagcctaattcctttaaccatgcagtcccatacctacacggcctcaggaaccctctcattccggtgtga-ttcggttcctcaagaagctgt 24629139  T
Q  110 caggagtcgctcattgtcatgccttgcgcaattatgatcactcctcgccctcatcagcctcaggtgttacatgcccaccagtttccgcttggttcgt 206  Q
    |||||| ||||||||||| ||||||| |||     || |||||||  ||||| | ||||| |||||||| ||||||||||| |||||||||||||||    
T  24629140 caggagccgctcattgtcgtgccttgtgcaccggcgaccactcctgtccctcgttagccttaggtgttatatgcccaccagcttccgcttggttcgt 24629236  T

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Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 13 - 180
Target Start/End: Original strand, 12692063 - 12692229
Alignment:
Q  13 aattcttataagcattcctttgaccatttagtctcatatgtgcatggccttacgaaccctctcattccagtgtgaattcggtttgtctaaaagctaccag 112  Q
    ||||||||||||| ||||||  |||||  |||| ||||  |||| ||||| | ||||||||||||||| ||||| ||||||||  |||| |||||  |||    
T  12692063 aattcttataagccttccttcaaccatgcagtcccatacctgcacggcctcaggaaccctctcattccggtgtg-attcggttcctctagaagctgtcag 12692161  T
Q  113 gagtcgctcattgtcatgccttgcgcaattatgatcactcctcgccctcatcagcctcaggtgttaca 180  Q
    ||| ||||||||||| ||||||| |||     || |||||| ||||||| |||||||  |||||||||    
T  12692162 gagccgctcattgtcgtgccttgtgcaccggcgaccactccccgccctcgtcagccttgggtgttaca 12692229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 117 - 204
Target Start/End: Original strand, 31817565 - 31817652
Alignment:
Q  117 cgctcattgtcatgccttgcgcaattatgatcactcctcgccctcatcagcctcaggtgttacatgcccaccagtttccgcttggttc 204  Q
    ||||||||||||||||||| ||| |  ||| |||||| || |||| |||||||| | ||||||||||||||||| |||||| ||||||    
T  31817565 cgctcattgtcatgccttgtgcactggtgaccactccccggcctcgtcagcctctgatgttacatgcccaccagcttccgcatggttc 31817652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 148 - 206
Target Start/End: Original strand, 23942984 - 23943042
Alignment:
Q  148 cactcctcgccctcatcagcctcaggtgttacatgcccaccagtttccgcttggttcgt 206  Q
    |||||| ||||||| ||| ||| |||||||||||||||||||| |||||||||||||||    
T  23942984 cactccccgccctcgtcatccttaggtgttacatgcccaccagcttccgcttggttcgt 23943042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 87 - 186
Target Start/End: Complemental strand, 27029281 - 27029182
Alignment:
Q  87 aattcggtttgtctaaaagctaccaggagtcgctcattgtcatgccttgcgcaattatgatcactcctcgccctcatcagcctcaggtgttacatgccca 186  Q
    ||||||||||  ||| |||||||||| || ||||||||||||| | ||| ||| |   || |||||| ||||||| |||||||| |||||||||||||||    
T  27029281 aattcggttttcctataagctaccagaagccgctcattgtcatacattgtgcattggcgaccactccccgccctcgtcagcctcgggtgttacatgccca 27029182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 148 - 206
Target Start/End: Original strand, 14571895 - 14571953
Alignment:
Q  148 cactcctcgccctcatcagcctcaggtgttacatgcccaccagtttccgcttggttcgt 206  Q
    |||||| |||||||||||||||| |||||||||| || ||||  |||||||||||||||    
T  14571895 cactccccgccctcatcagcctcgggtgttacatccctaccatcttccgcttggttcgt 14571953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 13 - 135
Target Start/End: Original strand, 21220395 - 21220516
Alignment:
Q  13 aattcttataagcattcctttgaccatttagtctcatatgtgcatggccttacgaaccctctcattccagtgtgaattcggtttgtctaaaagctaccag 112  Q
    ||||||||||||||||||||  ||||| |||| |||||  | |||||||| | || |||||||||||   |||| ||||||||  |||| ||||| || |    
T  21220395 aattcttataagcattccttcaaccatatagtttcatacctacatggcctcatgatccctctcattctgatgtg-attcggttcctctagaagctgccgg 21220493  T
Q  113 gagtcgctcattgtcatgccttg 135  Q
    ||| ||||||||||| |||||||    
T  21220494 gagccgctcattgtcgtgccttg 21220516  T

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Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 13 - 135
Target Start/End: Original strand, 24629497 - 24629618
Alignment:
Q  13 aattcttataagcattcctttgaccatttagtctcatatgtgcatggccttacgaaccctctcattccagtgtgaattcggtttgtctaaaagctaccag 112  Q
    ||||||||||||||||||||| |||||  |||| ||||  | || | ||| | ||||||||||||||| ||||| ||||||||  |||| |||||  ||     
T  24629497 aattcttataagcattcctttaaccatgcagtcccatacctacacgacctcaggaaccctctcattccggtgtg-attcggttcctctagaagctgtcaa 24629595  T
Q  113 gagtcgctcattgtcatgccttg 135  Q
    ||| ||||||||||| |||||||    
T  24629596 gagccgctcattgtcgtgccttg 24629618  T

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Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 148 - 189
Target Start/End: Original strand, 15306270 - 15306311
Alignment:
Q  148 cactcctcgccctcatcagcctcaggtgttacatgcccacca 189  Q
    ||||||||||||||||||||||| || |||||||||||||||    
T  15306270 cactcctcgccctcatcagcctcgggcgttacatgcccacca 15306311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 206
Target Start/End: Original strand, 4127636 - 4127694
Alignment:
Q  148 cactcctcgccctcatcagcctcaggtgttacatgcccaccagtttccgcttggttcgt 206  Q
    |||||| ||||||| |||| ||  ||||||||||| ||||||| |||||||||||||||    
T  4127636 cactccccgccctcgtcagtcttgggtgttacatgtccaccagcttccgcttggttcgt 4127694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 203
Target Start/End: Complemental strand, 17029350 - 17029217
Alignment:
Q  69 ccctctcattccagtgtgaattcggtttgtctaaaagctaccaggagtcgctcattgtcatgccttgcgcaattatgatcactcctcgccctcatcagcc 168  Q
    ||||||||||||  ||| ||||| ||||  ||||||| ||||| ||| ||||||||||||||| ||| |||   |||| || | | ||||||| ||| ||    
T  17029350 ccctctcattccgatgt-aattcagttttactaaaagataccaagagccgctcattgtcatgctttgtgcaccaatgaccaatacccgccctcgtcaacc 17029252  T
Q  169 tcaggtgttacatgcccaccagtttccgcttggtt 203  Q
    || || |||||||||||||  | ||||||||||||    
T  17029251 tcgggcgttacatgcccacttgcttccgcttggtt 17029217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 135
Target Start/End: Original strand, 33987191 - 33987256
Alignment:
Q  69 ccctctcattccagtgtgaattcggtttgtctaaaagctaccaggagtcgctcattgtcatgccttg 135  Q
    ||||||||||||  ||||| ||| ||||| ||| ||||| ||| |||||||||||||||||||||||    
T  33987191 ccctctcattccgatgtga-ttcagtttgcctagaagctgccaagagtcgctcattgtcatgccttg 33987256  T

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Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 66 - 135
Target Start/End: Original strand, 24271669 - 24271738
Alignment:
Q  66 gaaccctctcattccagtgtgaattcggtttgtctaaaagctaccaggagtcgctcattgtcatgccttg 135  Q
    |||||||||||||||  ||||||||||||||  ||||||| |  ||||||||| |||||| |||| ||||    
T  24271669 gaaccctctcattccgatgtgaattcggttttcctaaaagatgtcaggagtcgttcattgccatgtcttg 24271738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 148 - 189
Target Start/End: Complemental strand, 35871594 - 35871553
Alignment:
Q  148 cactcctcgccctcatcagcctcaggtgttacatgcccacca 189  Q
    |||||| |||||||||||||||| || |||||||||||||||    
T  35871594 cactccccgccctcatcagcctcgggcgttacatgcccacca 35871553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 148 - 189
Target Start/End: Original strand, 44471499 - 44471540
Alignment:
Q  148 cactcctcgccctcatcagcctcaggtgttacatgcccacca 189  Q
    |||||| |||||||||||||||| || |||||||||||||||    
T  44471499 cactccccgccctcatcagcctcgggcgttacatgcccacca 44471540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 181
Target Start/End: Complemental strand, 4185791 - 4185623
Alignment:
Q  13 aattcttataagcattcctttgaccatttagtctcatatgtgcatggccttacgaaccctctcattccagtgtgaattcggtttgtctaaaagctaccag 112  Q
    |||||||||| | |||||||| |||||   ||||||||  |||||||||| | |||||||||||||    |||||||||||||   ||| ||||| | |     
T  4185791 aattcttatatgtattcctttaaccatgccgtctcatacctgcatggcctcatgaaccctctcattttgatgtgaattcggttcacctagaagctgctat 4185692  T
Q  113 gagtcgctcattgtcatgccttgcgcaattatgatcactcctcgccctcatcagcctcaggtgttacat 181  Q
    ||| | |||||| ||||| |||| ||||  | ||||||||| | ||||  |||||||| || |||||||    
T  4185691 gagccactcattttcatgtcttgtgcaacgacgatcactcccctcccttgtcagcctcgggcgttacat 4185623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 105
Target Start/End: Original strand, 43929027 - 43929119
Alignment:
Q  13 aattcttataagcattcctttgaccatttagtctcatatgtgcatggccttacgaaccctctcattccagtgtgaattcggtttgtctaaaag 105  Q
    ||||||| ||||| |||||| |||||  ||||||||||  |||| ||| | | ||||||||||||| ||  ||| |||||||||| |||||||    
T  43929027 aattcttgtaagctttccttcgaccaaatagtctcatacctgcacggcttcaggaaccctctcatttcaaagtggattcggtttgcctaaaag 43929119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 2e-29; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 13 - 206
Target Start/End: Complemental strand, 32292473 - 32292281
Alignment:
Q  13 aattcttataagcattcctttgaccatttagtctcatatgtgcatggccttacgaaccctctcattccagtgtgaattcggtttgtctaaaagctaccag 112  Q
    ||||||||||||||||||||  |||||  |||| ||||  |||| ||||| | ||||||||||||||| |||||| |||||||  |||| || ||| | |    
T  32292473 aattcttataagcattccttcaaccatgcagtcccatacttgcacggcctcaggaaccctctcattccggtgtga-ttcggttcctctagaaactatcgg 32292375  T
Q  113 gagtcgctcattgtcatgccttgcgcaattatgatcactcctcgccctcatcagcctcaggtgttacatgcccaccagtttccgcttggttcgt 206  Q
    ||| ||||||||||| ||||||| |||     ||||||||| ||||||| |||||||  ||||||||||||||||||| |||||||||||||||    
T  32292374 gagccgctcattgtcgtgccttgtgcaccggcgatcactccccgccctcgtcagccttgggtgttacatgcccaccagcttccgcttggttcgt 32292281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 13 - 206
Target Start/End: Complemental strand, 10844959 - 10844767
Alignment:
Q  13 aattcttataagcattcctttgaccatttagtctcatatgtgcatggccttacgaaccctctcattccagtgtgaattcggtttgtctaaaagctaccag 112  Q
    ||||||||||||| ||||||  |||||  |||| ||||  |||| ||||| | ||||||||||||||| ||||| ||||||||  |||| |||||  |||    
T  10844959 aattcttataagctttccttcaaccatgcagtcccatacctgcacggcctcaggaaccctctcattccggtgtg-attcggttcctctagaagctgtcag 10844861  T
Q  113 gagtcgctcattgtcatgccttgcgcaattatgatcactcctcgccctcatcagcctcaggtgttacatgcccaccagtttccgcttggttcgt 206  Q
    ||| ||||||||||| ||||||| |||     || |||||| ||||||| |||||||  ||||||||||||||||||| |||||| ||||||||    
T  10844860 gagccgctcattgtcgtgccttgtgcaccggcgaccactccccgccctcgtcagccttgggtgttacatgcccaccagcttccgcatggttcgt 10844767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 13 - 180
Target Start/End: Complemental strand, 22026455 - 22026289
Alignment:
Q  13 aattcttataagcattcctttgaccatttagtctcatatgtgcatggccttacgaaccctctcattccagtgtgaattcggtttgtctaaaagctaccag 112  Q
    ||||||||||||| ||| ||  |||||  |||| ||||  |||| ||||| ||||||||||||||||| ||||| ||||||||  |||| |||||  |||    
T  22026455 aattcttataagccttcattcaaccatgcagtcccatacctgcacggcctcacgaaccctctcattccggtgtg-attcggttcctctagaagctgtcag 22026357  T
Q  113 gagtcgctcattgtcatgccttgcgcaattatgatcactcctcgccctcatcagcctcaggtgttaca 180  Q
    ||| ||||||||||||||||||| |||     || |||||||||||||| |||||||  |||||||||    
T  22026356 gagccgctcattgtcatgccttgtgcaccggcgaccactcctcgccctcgtcagccttgggtgttaca 22026289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 66 - 204
Target Start/End: Original strand, 22548672 - 22548809
Alignment:
Q  66 gaaccctctcattccagtgtgaattcggtttgtctaaaagctaccaggagtcgctcattgtcatgccttgcgcaattatgatcactcctcgccctcatca 165  Q
    ||||||||||||||| |||||| || ||||  |||| |||||  |||||| ||||||||||  ||||||| ||| |   || |||||| | |||||||||    
T  22548672 gaaccctctcattccggtgtga-ttaggttcctctagaagctgtcaggagccgctcattgtagtgccttgtgcactggcgaccactccccaccctcatca 22548770  T
Q  166 gcctcaggtgttacatgcccaccagtttccgcttggttc 204  Q
    ||||  ||||||||||||||| ||| |||||||||||||    
T  22548771 gccttgggtgttacatgcccatcagcttccgcttggttc 22548809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 184
Target Start/End: Complemental strand, 27925975 - 27925805
Alignment:
Q  13 aattcttataagcattcctttgaccatttagtctcatatgtgcatggccttacgaaccctctcattccagtgtgaattcggtttgtctaaaagctaccag 112  Q
    ||||||||||| | ||||||  |||||  |||| ||||  |||| ||||| | ||||||||||||||| ||||| ||||||||  |||| |||||  |||    
T  27925975 aattcttataatccttccttcaaccatgcagtcccatacctgcacggcctcaggaaccctctcattccggtgtg-attcggttcctctagaagctgtcag 27925877  T
Q  113 gagtcgctcattgtcatgccttgcgcaattatgatcactcctcgccctcatcagcctcaggtgttacatgcc 184  Q
    ||| ||||||||||| ||||||| |||     || |||||| || |||| |||||||  |||||||||||||    
T  27925876 gagccgctcattgtcgtgccttgtgcaccagcgaccactccccgtcctcgtcagccttgggtgttacatgcc 27925805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 148 - 189
Target Start/End: Original strand, 34309119 - 34309160
Alignment:
Q  148 cactcctcgccctcatcagcctcaggtgttacatgcccacca 189  Q
    ||||||||||||||||||||||| || |||||||||||||||    
T  34309119 cactcctcgccctcatcagcctcgggcgttacatgcccacca 34309160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 148 - 189
Target Start/End: Original strand, 21316289 - 21316330
Alignment:
Q  148 cactcctcgccctcatcagcctcaggtgttacatgcccacca 189  Q
    |||||| |||||||||||||||| || |||||||||||||||    
T  21316289 cactccccgccctcatcagcctcgggcgttacatgcccacca 21316330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 148 - 189
Target Start/End: Complemental strand, 25147502 - 25147461
Alignment:
Q  148 cactcctcgccctcatcagcctcaggtgttacatgcccacca 189  Q
    |||||| ||||||||||||||||  |||||||||||||||||    
T  25147502 cactccccgccctcatcagcctcgagtgttacatgcccacca 25147461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 188
Target Start/End: Complemental strand, 12100658 - 12100618
Alignment:
Q  148 cactcctcgccctcatcagcctcaggtgttacatgcccacc 188  Q
    |||||| |||||||||||||||| |||||||||||| ||||    
T  12100658 cactccccgccctcatcagcctcgggtgttacatgcacacc 12100618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 6e-27; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 13 - 206
Target Start/End: Original strand, 20054150 - 20054342
Alignment:
Q  13 aattcttataagcattcctttgaccatttagtctcatatgtgcatggccttacgaaccctctcattccagtgtgaattcggtttgtctaaaagctaccag 112  Q
    ||||||||||||| ||||||  |||||  |||| ||||  |||| ||||| | ||||||||||||||| ||||| ||||||||  |||| |||||  |||    
T  20054150 aattcttataagccttccttcaaccatgcagtcccatacctgcacggcctcaggaaccctctcattccggtgtg-attcggttcctctagaagctgtcag 20054248  T
Q  113 gagtcgctcattgtcatgccttgcgcaattatgatcactcctcgccctcatcagcctcaggtgttacatgcccaccagtttccgcttggttcgt 206  Q
    ||| ||||||||||| ||||||| |||     || |||||| ||||||| |||||||  ||||||||||||||||||| |||||||||||||||    
T  20054249 gagccgctcattgtcgtgccttgtgcaccggcgaccactccccgccctcgtcagccttgggtgttacatgcccaccagcttccgcttggttcgt 20054342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 13 - 206
Target Start/End: Original strand, 20054606 - 20054798
Alignment:
Q  13 aattcttataagcattcctttgaccatttagtctcatatgtgcatggccttacgaaccctctcattccagtgtgaattcggtttgtctaaaagctaccag 112  Q
    ||||||||||||| ||||||  |||||  |||| ||||  |||| ||||| | ||||||||||||||| ||||| ||||||||  |||| |||||  |||    
T  20054606 aattcttataagccttccttcaaccatgcagtcccatacctgcacggcctcaggaaccctctcattccggtgtg-attcggttcctctagaagctgtcag 20054704  T
Q  113 gagtcgctcattgtcatgccttgcgcaattatgatcactcctcgccctcatcagcctcaggtgttacatgcccaccagtttccgcttggttcgt 206  Q
    ||| ||||||||||| ||||||| |||     || |||||| ||||||| |||||||  ||||||||||||||||||| |||||||||||||||    
T  20054705 gagccgctcattgtcgtgccttgtgcaccggcgaccactccccgccctcgtcagccttgggtgttacatgcccaccagcttccgcttggttcgt 20054798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 13 - 206
Target Start/End: Original strand, 20055062 - 20055254
Alignment:
Q  13 aattcttataagcattcctttgaccatttagtctcatatgtgcatggccttacgaaccctctcattccagtgtgaattcggtttgtctaaaagctaccag 112  Q
    ||||||||||||| ||||||  |||||  |||| ||||  |||| ||||| | ||||||||||||||| ||||| ||||||||  |||| |||||  |||    
T  20055062 aattcttataagccttccttcaaccatgcagtcccatacctgcacggcctcaggaaccctctcattccggtgtg-attcggttcctctagaagctgtcag 20055160  T
Q  113 gagtcgctcattgtcatgccttgcgcaattatgatcactcctcgccctcatcagcctcaggtgttacatgcccaccagtttccgcttggttcgt 206  Q
    ||| ||||||||||| ||||||| |||     || |||||| ||||||| |||||||  ||||||||||||||||||| |||||||||||||||    
T  20055161 gagccgctcattgtcgtgccttgtgcaccggcgaccactccccgccctcgtcagccttgggtgttacatgcccaccagcttccgcttggttcgt 20055254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 13 - 206
Target Start/End: Original strand, 20055518 - 20055710
Alignment:
Q  13 aattcttataagcattcctttgaccatttagtctcatatgtgcatggccttacgaaccctctcattccagtgtgaattcggtttgtctaaaagctaccag 112  Q
    ||||||||||||| ||||||  |||||  |||| ||||  |||| ||||| | ||||||||||||||| ||||| ||||||||  |||| |||||  |||    
T  20055518 aattcttataagccttccttcaaccatgcagtcccatacctgcacggcctcaggaaccctctcattccggtgtg-attcggttcctctagaagctgtcag 20055616  T
Q  113 gagtcgctcattgtcatgccttgcgcaattatgatcactcctcgccctcatcagcctcaggtgttacatgcccaccagtttccgcttggttcgt 206  Q
    ||| ||||||||||| ||||||| |||     || |||||| ||||||| |||||||  ||||||||||||||||||| |||||||||||||||    
T  20055617 gagccgctcattgtcgtgccttgtgcaccggcgaccactccccgccctcgtcagccttgggtgttacatgcccaccagcttccgcttggttcgt 20055710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 13 - 206
Target Start/End: Original strand, 20055974 - 20056166
Alignment:
Q  13 aattcttataagcattcctttgaccatttagtctcatatgtgcatggccttacgaaccctctcattccagtgtgaattcggtttgtctaaaagctaccag 112  Q
    ||||||||||||| ||||||  |||||  |||| ||||  |||| ||||| | ||||||||||||||| ||||| ||||||||  |||| |||||  |||    
T  20055974 aattcttataagccttccttcaaccatgcagtcccatacctgcacggcctcaggaaccctctcattccggtgtg-attcggttcctctagaagctgtcag 20056072  T
Q  113 gagtcgctcattgtcatgccttgcgcaattatgatcactcctcgccctcatcagcctcaggtgttacatgcccaccagtttccgcttggttcgt 206  Q
    ||| ||||||||||| ||||||| |||     || |||||| ||||||| |||||||  ||||||||||||||||||| |||||||||||||||    
T  20056073 gagccgctcattgtcgtgccttgtgcaccggcgaccactccccgccctcgtcagccttgggtgttacatgcccaccagcttccgcttggttcgt 20056166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 13 - 206
Target Start/End: Original strand, 20056430 - 20056622
Alignment:
Q  13 aattcttataagcattcctttgaccatttagtctcatatgtgcatggccttacgaaccctctcattccagtgtgaattcggtttgtctaaaagctaccag 112  Q
    ||||||||||||| ||||||  |||||  |||| ||||  |||| ||||| | ||||||||||||||| ||||| ||||||||  |||| |||||  |||    
T  20056430 aattcttataagccttccttcaaccatgcagtcccatacctgcacggcctcaggaaccctctcattccggtgtg-attcggttcctctagaagctgtcag 20056528  T
Q  113 gagtcgctcattgtcatgccttgcgcaattatgatcactcctcgccctcatcagcctcaggtgttacatgcccaccagtttccgcttggttcgt 206  Q
    ||| ||||||||||| ||||||| |||     || |||||| ||||||| |||||||  ||||||||||||||||||| |||||||||||||||    
T  20056529 gagccgctcattgtcgtgccttgtgcaccggcgaccactccccgccctcgtcagccttgggtgttacatgcccaccagcttccgcttggttcgt 20056622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 13 - 206
Target Start/End: Original strand, 20057333 - 20057525
Alignment:
Q  13 aattcttataagcattcctttgaccatttagtctcatatgtgcatggccttacgaaccctctcattccagtgtgaattcggtttgtctaaaagctaccag 112  Q
    ||||||||||||| ||||||  |||||  |||| ||||  |||| ||||| | ||||||||||||||| ||||| ||||||||  |||| |||||  |||    
T  20057333 aattcttataagccttccttcaaccatgcagtcccatacctgcacggcctcaggaaccctctcattccggtgtg-attcggttcctctagaagctgtcag 20057431  T
Q  113 gagtcgctcattgtcatgccttgcgcaattatgatcactcctcgccctcatcagcctcaggtgttacatgcccaccagtttccgcttggttcgt 206  Q
    ||| ||||||||||| ||||||| |||     || |||||| ||||||| |||||||  ||||||||||||||||||| |||||||||||||||    
T  20057432 gagccgctcattgtcgtgccttgtgcaccggcgaccactccccgccctcgtcagccttgggtgttacatgcccaccagcttccgcttggttcgt 20057525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 66 - 206
Target Start/End: Original strand, 20056930 - 20057069
Alignment:
Q  66 gaaccctctcattccagtgtgaattcggtttgtctaaaagctaccaggagtcgctcattgtcatgccttgcgcaattatgatcactcctcgccctcatca 165  Q
    ||||||||||||||| |||||| |||||||  |||| |||||  |||||| ||||||||||| ||||||| |||     || |||||| ||||||| |||    
T  20056930 gaaccctctcattccggtgtga-ttcggttcctctagaagctgtcaggagccgctcattgtcgtgccttgtgcaccggcgaccactccccgccctcgtca 20057028  T
Q  166 gcctcaggtgttacatgcccaccagtttccgcttggttcgt 206  Q
    ||||  ||||||||||||||||||| |||||||||||||||    
T  20057029 gccttgggtgttacatgcccaccagcttccgcttggttcgt 20057069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 13 - 135
Target Start/End: Original strand, 20845731 - 20845852
Alignment:
Q  13 aattcttataagcattcctttgaccatttagtctcatatgtgcatggccttacgaaccctctcattccagtgtgaattcggtttgtctaaaagctaccag 112  Q
    ||||||||||||| ||||||  |||||  |||||||||  |||| ||||| | ||||| ||||||||| ||||| ||||||||  |||| |||||  |||    
T  20845731 aattcttataagccttccttcaaccatgcagtctcatacctgcacggcctcaggaaccgtctcattccggtgtg-attcggttcctctagaagctgtcag 20845829  T
Q  113 gagtcgctcattgtcatgccttg 135  Q
    ||| ||||||||||| |||||||    
T  20845830 gagccgctcattgtcgtgccttg 20845852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 112 - 206
Target Start/End: Original strand, 43057232 - 43057326
Alignment:
Q  112 ggagtcgctcattgtcatgccttgcgcaattatgatcactcctcgccctcatcagcctcaggtgttacatgcccaccagtttccgcttggttcgt 206  Q
    |||||||||||||||||||||||| |||      | |||||| || |||| |||||||  ||||||||||||||||||| |||||||||||||||    
T  43057232 ggagtcgctcattgtcatgccttgtgcaccggcaaccactccccgtcctcgtcagccttgggtgttacatgcccaccagcttccgcttggttcgt 43057326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 13 - 183
Target Start/End: Complemental strand, 38340982 - 38340813
Alignment:
Q  13 aattcttataagcattcctttgaccatttagtctcatatgtgcatggccttacgaaccctctcattccagtgtgaattcggtttgtctaaaagctaccag 112  Q
    ||||||||||||| ||||||  |||||  |||| ||||  |||| ||||| | ||||| ||||||||| ||||| ||||||||  |||| |||||  |||    
T  38340982 aattcttataagccttccttcaaccatgcagtcccatacctgcacggcctcaggaaccatctcattccggtgtg-attcggttcctctagaagctgtcag 38340884  T
Q  113 gagtcgctcattgtcatgccttgcgcaattatgatcactcctcgccctcatcagcctcaggtgttacatgc 183  Q
     || ||||||||||| ||||||| |||    ||| |||||| | ||||| |||||||  ||||||||||||    
T  38340883 tagccgctcattgtcgtgccttgtgcaccggtgaccactccccaccctcgtcagccttgggtgttacatgc 38340813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 13 - 135
Target Start/End: Original strand, 43057593 - 43057714
Alignment:
Q  13 aattcttataagcattcctttgaccatttagtctcatatgtgcatggccttacgaaccctctcattccagtgtgaattcggtttgtctaaaagctaccag 112  Q
    ||||||||||||| ||||||  ||||| ||||||||||  | || ||||| | || ||||||||||||  |||| ||||||||  ||||||||||  | |    
T  43057593 aattcttataagccttccttcaaccatgtagtctcatacctacacggcctcaggatccctctcattccgatgtg-attcggttcctctaaaagctgtcgg 43057691  T
Q  113 gagtcgctcattgtcatgccttg 135  Q
    ||| ||||||||| |||||||||    
T  43057692 gagccgctcattggcatgccttg 43057714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 13 - 135
Target Start/End: Complemental strand, 52250282 - 52250161
Alignment:
Q  13 aattcttataagcattcctttgaccatttagtctcatatgtgcatggccttacgaaccctctcattccagtgtgaattcggtttgtctaaaagctaccag 112  Q
    ||||||||||||| |||||| |||||| ||||| ||||  | || ||||| | || |||||||||||| ||||| ||||||||  |||| |||||  | |    
T  52250282 aattcttataagccttccttcgaccatgtagtcccatacctacaaggcctcatgatccctctcattccggtgtg-attcggttcctctagaagctgtcgg 52250184  T
Q  113 gagtcgctcattgtcatgccttg 135  Q
    ||| ||||||||||| |||||||    
T  52250183 gagccgctcattgtcgtgccttg 52250161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 204
Target Start/End: Original strand, 20061371 - 20061427
Alignment:
Q  148 cactcctcgccctcatcagcctcaggtgttacatgcccaccagtttccgcttggttc 204  Q
    |||||| |||||||||||||||| || |||||||||||||||  |||||| ||||||    
T  20061371 cactccccgccctcatcagcctcgggcgttacatgcccaccaacttccgcatggttc 20061427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 206
Target Start/End: Original strand, 50002479 - 50002513
Alignment:
Q  172 ggtgttacatgcccaccagtttccgcttggttcgt 206  Q
    ||||||||||||||||||| |||||||||||||||    
T  50002479 ggtgttacatgcccaccagcttccgcttggttcgt 50002513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 206
Target Start/End: Original strand, 31822869 - 31822925
Alignment:
Q  150 ctcctcgccctcatcagcctcaggtgttacatgcccaccagtttccgcttggttcgt 206  Q
    ||||||||| || ||||||   ||||||||||| ||||||| |||||||||||||||    
T  31822869 ctcctcgccatcgtcagccgtgggtgttacatgtccaccagcttccgcttggttcgt 31822925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 1e-24; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 13 - 206
Target Start/End: Original strand, 34405661 - 34405853
Alignment:
Q  13 aattcttataagcattcctttgaccatttagtctcatatgtgcatggccttacgaaccctctcattccagtgtgaattcggtttgtctaaaagctaccag 112  Q
    ||||||||||||| ||||||  ||||| ||||| ||||  | || ||||||| || |||||||||||| |||||| |||||||  |||| |||||  | |    
T  34405661 aattcttataagccttccttcaaccatgtagtcccatacctacaaggccttaggatccctctcattccggtgtga-ttcggttcctctagaagctgtcgg 34405759  T
Q  113 gagtcgctcattgtcatgccttgcgcaattatgatcactcctcgccctcatcagcctcaggtgttacatgcccaccagtttccgcttggttcgt 206  Q
    ||| ||||||||||| ||||||| |||     || |||||| ||||||| |||||||  ||||||||||||||||||| |||||||||||||||    
T  34405760 gagccgctcattgtcgtgccttgtgcaccggcgaccactccccgccctcgtcagccttgggtgttacatgcccaccagcttccgcttggttcgt 34405853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 66 - 206
Target Start/End: Complemental strand, 2189167 - 2189028
Alignment:
Q  66 gaaccctctcattccagtgtgaattcggtttgtctaaaagctaccaggagtcgctcattgtcatgccttgcgcaattatgatcactcctcgccctcatca 165  Q
    ||||||||||||||| |||||| |||||||  |||| |||||  |||||| ||||||||||| ||||||| |||     || |||||| ||||||| |||    
T  2189167 gaaccctctcattccggtgtga-ttcggttcctctagaagctgtcaggagccgctcattgtcgtgccttgtgcaccggcgaccactccccgccctcgtca 2189069  T
Q  166 gcctcaggtgttacatgcccaccagtttccgcttggttcgt 206  Q
     |||   |||||||||||||||||| |||||||||||||||    
T  2189068 tccttgagtgttacatgcccaccagcttccgcttggttcgt 2189028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 13 - 206
Target Start/End: Original strand, 6747668 - 6747860
Alignment:
Q  13 aattcttataagcattcctttgaccatttagtctcatatgtgcatggccttacgaaccctctcattccagtgtgaattcggtttgtctaaaagctaccag 112  Q
    ||||||||||| | ||||||  ||||| |||| |||||  | || ||||| | || ||||||||||||| ||||| ||| | ||||||| ||| |  | |    
T  6747668 aattcttataatccttccttcaaccatgtagtatcatacctacacggcctcaggatccctctcattccaatgtga-ttcagcttgtctagaagttgtcgg 6747766  T
Q  113 gagtcgctcattgtcatgccttgcgcaattatgatcactcctcgccctcatcagcctcaggtgttacatgcccaccagtttccgcttggttcgt 206  Q
    ||| ||||||||||||||||||| |||     || ||||||  |||||| |||||||  ||||||||||||||||||| |||| ||||||||||    
T  6747767 gagccgctcattgtcatgccttgtgcaccggcgaccactccctgccctcgtcagccttgggtgttacatgcccaccagcttccacttggttcgt 6747860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 148 - 206
Target Start/End: Complemental strand, 2189542 - 2189484
Alignment:
Q  148 cactcctcgccctcatcagcctcaggtgttacatgcccaccagtttccgcttggttcgt 206  Q
    |||||| ||||||| |||||||  ||||||||||||||||||| |||||||||||||||    
T  2189542 cactccccgccctcgtcagccttgggtgttacatgcccaccagcttccgcttggttcgt 2189484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 117 - 206
Target Start/End: Original strand, 35474294 - 35474383
Alignment:
Q  117 cgctcattgtcatgccttgcgcaattatgatcactcctcgccctcatcagcctcaggtgttacatgcccaccagtttccgcttggttcgt 206  Q
    ||||||||||| ||||||| |||   | || |||||| ||| ||||||||||| ||||||||||||||||| |  |||||||||||||||    
T  35474294 cgctcattgtcgtgccttgtgcaccgacgaccactccccgcactcatcagccttaggtgttacatgcccactaacttccgcttggttcgt 35474383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 206
Target Start/End: Complemental strand, 43233489 - 43233297
Alignment:
Q  13 aattcttataagcattcctttgaccatttagtctcatatgtgcatggccttacgaaccctctcattccagtgtgaattcggtttgtctaaaagctaccag 112  Q
    ||||||||||||  ||||||| |||||  |||| ||||  | || ||||| | || |||||||||| | |||||| |||||||  |||| |||||   ||    
T  43233489 aattcttataagtcttcctttaaccatacagtcacatacctacacggcctcatgatccctctcatttcggtgtga-ttcggttcctctagaagctgttag 43233391  T
Q  113 gagtcgctcattgtcatgccttgcgcaattatgatcactcctcgccctcatcagcctcaggtgttacatgcccaccagtttccgcttggttcgt 206  Q
    ||| ||||||||||| ||||||  |||     || |||||||||| ||| |||||||  |||||||||| |||||||| |||||||||||||||    
T  43233390 gagccgctcattgtcgtgccttatgcaccggcgaccactcctcgcactcgtcagccttgggtgttacatccccaccagcttccgcttggttcgt 43233297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 148 - 204
Target Start/End: Original strand, 13124881 - 13124937
Alignment:
Q  148 cactcctcgccctcatcagcctcaggtgttacatgcccaccagtttccgcttggttc 204  Q
    |||||| |||||||||||||||| || |||||||||||||||  |||||||||||||    
T  13124881 cactccccgccctcatcagcctcgggcgttacatgcccaccaacttccgcttggttc 13124937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 135
Target Start/End: Complemental strand, 2193332 - 2193211
Alignment:
Q  13 aattcttataagcattcctttgaccatttagtctcatatgtgcatggccttacgaaccctctcattccagtgtgaattcggtttgtctaaaagctaccag 112  Q
    ||||||||||||| ||||||  |||||  |||| ||||  |||| || || | ||||||||||||||| ||||| ||||||||  |||| |||||  |||    
T  2193332 aattcttataagccttccttcaaccatgcagtcccatacctgcacggtctcaggaaccctctcattccggtgtg-attcggttcctctagaagctgtcag 2193234  T
Q  113 gagtcgctcattgtcatgccttg 135  Q
    ||| || |||||||| |||||||    
T  2193233 gagccgttcattgtcgtgccttg 2193211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 148 - 189
Target Start/End: Complemental strand, 9124925 - 9124884
Alignment:
Q  148 cactcctcgccctcatcagcctcaggtgttacatgcccacca 189  Q
    |||||| |||||||||||||||| || |||||||||||||||    
T  9124925 cactccccgccctcatcagcctcgggcgttacatgcccacca 9124884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 1e-24; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 13 - 206
Target Start/End: Original strand, 21886216 - 21886408
Alignment:
Q  13 aattcttataagcattcctttgaccatttagtctcatatgtgcatggccttacgaaccctctcattccagtgtgaattcggtttgtctaaaagctaccag 112  Q
    ||||||||||||| ||||||  |||||  |||| ||||  ||||   ||| | ||||||||||||||| |||||| |||||||  |||| ||||||||||    
T  21886216 aattcttataagccttccttcaaccatgcagtcccatacctgcacaacctcaggaaccctctcattccggtgtga-ttcggttcctctagaagctaccag 21886314  T
Q  113 gagtcgctcattgtcatgccttgcgcaattatgatcactcctcgccctcatcagcctcaggtgttacatgcccaccagtttccgcttggttcgt 206  Q
    ||| ||||||||||| ||||||| |||     || |||||  |||||||||||||||  ||||||||||||||||||| ||| |||||||||||    
T  21886315 gagccgctcattgtcgtgccttgtgcaccggcgaccactctccgccctcatcagccttcggtgttacatgcccaccagcttctgcttggttcgt 21886408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 13 - 206
Target Start/End: Complemental strand, 34372144 - 34371952
Alignment:
Q  13 aattcttataagcattcctttgaccatttagtctcatatgtgcatggccttacgaaccctctcattccagtgtgaattcggtttgtctaaaagctaccag 112  Q
    ||||||| ||||||||||||  ||||| ||||| ||||  || | ||||||  ||||||||||||||  |||||| |||||||  |||| |||||  |||    
T  34372144 aattcttttaagcattccttcaaccatgtagtcccatacttgtacggccttgggaaccctctcattctggtgtga-ttcggttcctctagaagctgtcag 34372046  T
Q  113 gagtcgctcattgtcatgccttgcgcaattatgatcactcctcgccctcatcagcctcaggtgttacatgcccaccagtttccgcttggttcgt 206  Q
    ||| ||||||||||| ||||||| |||     || |||||| ||||||| |||||||  ||||||||||||||||||| |||||||||||||||    
T  34372045 gagccgctcattgtcctgccttgtgcaccggcgaccactccccgccctcgtcagccttgggtgttacatgcccaccagcttccgcttggttcgt 34371952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 181
Target Start/End: Complemental strand, 34867866 - 34867699
Alignment:
Q  13 aattcttataagcattcctttgaccatttagtctcatatgtgcatggccttacgaaccctctcattccagtgtgaattcggtttgtctaaaagctaccag 112  Q
    ||||||||||||| ||||||  |||||  |||| ||||  |||| ||||| | ||||||||||||||| ||||| ||||||||  |||| |||||  |||    
T  34867866 aattcttataagccttccttcaaccatgcagtcccatacctgcacggcctcaggaaccctctcattccggtgtg-attcggttcttctagaagctgtcag 34867768  T
Q  113 gagtcgctcattgtcatgccttgcgcaattatgatcactcctcgccctcatcagcctcaggtgttacat 181  Q
    ||| ||||||||||| ||||||| |||     ||  ||||||||||||| |||||||  ||||||||||    
T  34867767 gagccgctcattgtcgtgccttgtgcaccggcgactactcctcgccctcgtcagccttgggtgttacat 34867699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 148 - 206
Target Start/End: Complemental strand, 22556935 - 22556877
Alignment:
Q  148 cactcctcgccctcatcagcctcaggtgttacatgcccaccagtttccgcttggttcgt 206  Q
    |||||| |||||||||||||||| || |||||||||||||||| ||| |||||||||||    
T  22556935 cactccccgccctcatcagcctcgggcgttacatgcccaccagcttctgcttggttcgt 22556877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 171 - 206
Target Start/End: Original strand, 3886828 - 3886863
Alignment:
Q  171 aggtgttacatgcccaccagtttccgcttggttcgt 206  Q
    |||||||||||||||||||| |||||||||||||||    
T  3886828 aggtgttacatgcccaccagcttccgcttggttcgt 3886863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 180
Target Start/End: Complemental strand, 34371688 - 34371522
Alignment:
Q  13 aattcttataagcattcctttgaccatttagtctcatatgtgcatggccttacgaaccctctcattccagtgtgaattcggtttgtctaaaagctaccag 112  Q
    ||||||| ||||||||||||  |||||  |||| || |  || | ||||||  ||||||||||||||| |||||| |||||||  |||| |||||  |||    
T  34371688 aattcttttaagcattccttcaaccatgcagtcccacacctgtacggccttgggaaccctctcattccggtgtga-ttcggttcctctagaagctgtcag 34371590  T
Q  113 gagtcgctcattgtcatgccttgcgcaattatgatcactcctcgccctcatcagcctcaggtgttaca 180  Q
    ||| ||||||||||| ||||||| |||     || |||||| ||||||| |||||||  |||||||||    
T  34371589 gagccgctcattgtcgtgccttgtgcaccggcgaccactccccgccctcgtcagccttgggtgttaca 34371522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 148 - 189
Target Start/End: Complemental strand, 2474371 - 2474330
Alignment:
Q  148 cactcctcgccctcatcagcctcaggtgttacatgcccacca 189  Q
    |||||| |||||||||||||||| || |||||||||||||||    
T  2474371 cactccccgccctcatcagcctcgggcgttacatgcccacca 2474330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 148 - 189
Target Start/End: Original strand, 3887237 - 3887278
Alignment:
Q  148 cactcctcgccctcatcagcctcaggtgttacatgcccacca 189  Q
    |||||| |||||||||||||||| || |||||||||||||||    
T  3887237 cactccccgccctcatcagcctcgggcgttacatgcccacca 3887278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0333 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: scaffold0333
Description:

Target: scaffold0333; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 53 - 204
Target Start/End: Complemental strand, 5052 - 4902
Alignment:
Q  53 tgcatggccttacgaaccctctcattccagtgtgaattcggtttgtctaaaagctaccaggagtcgctcattgtcatgccttgcgcaattatgatcactc 152  Q
    |||||||||| | ||||||||||||||| |||||| |||||||  |||| ||| |  |||||| |||| |||||| ||||||| |||     || |||||    
T  5052 tgcatggcctcaggaaccctctcattccggtgtga-ttcggttcctctagaagttgtcaggagccgctaattgtcgtgccttgtgcaccggcgaccactc 4954  T
Q  153 ctcgccctcatcagcctcaggtgttacatgcccaccagtttccgcttggttc 204  Q
    ||||||||| ||||||| |||||||||||||||||||| |||||||||||||    
T  4953 ctcgccctcgtcagccttaggtgttacatgcccaccagcttccgcttggttc 4902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 9e-20; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 13 - 206
Target Start/End: Complemental strand, 33175034 - 33174842
Alignment:
Q  13 aattcttataagcattcctttgaccatttagtctcatatgtgcatggccttacgaaccctctcattccagtgtgaattcggtttgtctaaaagctaccag 112  Q
    ||||||||||||| ||||||  ||||| ||||| ||||  | || ||||| | || ||||||||||||  ||||| ||||| ||||||| ||| |  | |    
T  33175034 aattcttataagccttccttcaaccatgtagtcccatacctacacggcctcaggatccctctcattccgatgtga-ttcggcttgtctagaagttgtcgg 33174936  T
Q  113 gagtcgctcattgtcatgccttgcgcaattatgatcactcctcgccctcatcagcctcaggtgttacatgcccaccagtttccgcttggttcgt 206  Q
    ||| | ||||||||||||||||| |||     || |||||| ||||||| |||||||  ||||||||||||||||||| |||||||||||||||    
T  33174935 gagccactcattgtcatgccttgtgcaccggcgaccactccccgccctcgtcagccttgggtgttacatgcccaccagcttccgcttggttcgt 33174842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 13 - 135
Target Start/End: Complemental strand, 41754365 - 41754244
Alignment:
Q  13 aattcttataagcattcctttgaccatttagtctcatatgtgcatggccttacgaaccctctcattccagtgtgaattcggtttgtctaaaagctaccag 112  Q
    ||||||||||||| ||||||  |||||  |||||||||  |||| ||||| | ||||||||||||||| ||||| |||| |||  |||| |||||  |||    
T  41754365 aattcttataagccttccttcaaccatgcagtctcatacctgcacggcctcaagaaccctctcattccggtgtg-attcagttcctctagaagctgtcag 41754267  T
Q  113 gagtcgctcattgtcatgccttg 135  Q
    ||| ||||||||||| |||||||    
T  41754266 gagccgctcattgtcgtgccttg 41754244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 180
Target Start/End: Original strand, 25338067 - 25338233
Alignment:
Q  13 aattcttataagcattcctttgaccatttagtctcatatgtgcatggccttacgaaccctctcattccagtgtgaattcggtttgtctaaaagctaccag 112  Q
    ||||||||||||| ||||||  |||||  |||| ||||  |||| | ||| | ||||||||||||||| ||||| |||| |||  |||| |||||  |||    
T  25338067 aattcttataagccttccttcaaccatgcagtcccatacctgcacgacctcaggaaccctctcattccggtgtg-attcagttcctctagaagctgtcag 25338165  T
Q  113 gagtcgctcattgtcatgccttgcgcaattatgatcactcctcgccctcatcagcctcaggtgttaca 180  Q
    ||| ||||||||||| ||||||| |||     || |||||||||||||| |||||||  |||||||||    
T  25338166 gagccgctcattgtcgtgccttgtgcaccggcgaccactcctcgccctcgtcagccttgggtgttaca 25338233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 135
Target Start/End: Original strand, 25434126 - 25434247
Alignment:
Q  13 aattcttataagcattcctttgaccatttagtctcatatgtgcatggccttacgaaccctctcattccagtgtgaattcggtttgtctaaaagctaccag 112  Q
    ||||||||||||| ||||||  |||||  |||| ||||   ||| ||||| | || |||||||||||| |||||| ||||||| || || |||||  |||    
T  25434126 aattcttataagccttccttcaaccatgaagtcccataccagcacggcctcaggatccctctcattccggtgtga-ttcggttcgtttagaagctgtcag 25434224  T
Q  113 gagtcgctcattgtcatgccttg 135  Q
    ||| ||||||||||| |||||||    
T  25434225 gagccgctcattgtcgtgccttg 25434247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 206
Target Start/End: Original strand, 38899116 - 38899174
Alignment:
Q  148 cactcctcgccctcatcagcctcaggtgttacatgcccaccagtttccgcttggttcgt 206  Q
    |||||| ||||||| |||| ||   |||||||||||||||||| |||||||||||||||    
T  38899116 cactccccgccctcgtcagtcttgagtgttacatgcccaccagcttccgcttggttcgt 38899174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 148 - 189
Target Start/End: Complemental strand, 30966656 - 30966615
Alignment:
Q  148 cactcctcgccctcatcagcctcaggtgttacatgcccacca 189  Q
    |||||| |||||||||||||||| || |||||||||||||||    
T  30966656 cactccccgccctcatcagcctcgggcgttacatgcccacca 30966615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 13 - 206
Target Start/End: Complemental strand, 154833 - 154642
Alignment:
Q  13 aattcttataagcattcctttgaccatttagtctcatatgtgcatggccttacgaaccctctcattccagtgtgaattcggtttgtctaaaagctaccag 112  Q
    ||||||||||||| ||||||  ||||| ||||| ||||  | || ||||| | || |||||||||||| | |||| |||||||  |||| |||||  |      
T  154833 aattcttataagccttccttcaaccatgtagtcccatacctacaaggcctcaggagccctctcattccggcgtga-ttcggttcctctagaagctgtcga 154735  T
Q  113 gagtcgctcattgtcatgccttgcgcaattatgatcactcctcgccctcatcagcctcaggtgttacatgcccaccagtttccgcttggttcgt 206  Q
    ||| ||||||||||| ||||||| |||     || |||||| |||||||||||||||  ||||||||||||||||||| |||||||||||||||    
T  154734 gagccgctcattgtcgtgccttgtgcaccggcga-cactccccgccctcatcagccttgggtgttacatgcccaccagcttccgcttggttcgt 154642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 13 - 206
Target Start/End: Original strand, 13150169 - 13150360
Alignment:
Q  13 aattcttataagcattcctttgaccatttagtctcatatgtgcatggccttacgaaccctctcattccagtgtgaattcggtttgtctaaaagctaccag 112  Q
    ||||||||||||| ||||||  ||||| ||||| ||||  | || ||||| | || |||||||||||| | |||| |||||||  |||| |||||  |      
T  13150169 aattcttataagccttccttcaaccatgtagtcccatacctacaaggcctcaggagccctctcattccggcgtga-ttcggttcctctagaagctgtcga 13150267  T
Q  113 gagtcgctcattgtcatgccttgcgcaattatgatcactcctcgccctcatcagcctcaggtgttacatgcccaccagtttccgcttggttcgt 206  Q
    ||| ||||||||||| ||||||| |||     || |||||| |||||||||||||||  ||||||||||||||||||| |||||||||||||||    
T  13150268 gagccgctcattgtcgtgccttgtgcaccggcga-cactccccgccctcatcagccttgggtgttacatgcccaccagcttccgcttggttcgt 13150360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 134
Target Start/End: Complemental strand, 29224400 - 29224280
Alignment:
Q  13 aattcttataagcattcctttgaccatttagtctcatatgtgcatggccttacgaaccctctcattccagtgtgaattcggtttgtctaaaagctaccag 112  Q
    ||||||||||||  ||||||  |||||  |||||||||| | |||||||| | ||||||| ||||||   ||||||||||| |||   ||||||| ||||    
T  29224400 aattcttataagtcttccttcaaccatgcagtctcatatctacatggcctcatgaaccctttcattctgatgtgaattcgg-ttgctgaaaagctgccag 29224302  T
Q  113 gagtcgctcattgtcatgcctt 134  Q
    ||| ||||||||||||||||||    
T  29224301 gagccgctcattgtcatgcctt 29224280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 110 - 206
Target Start/End: Complemental strand, 39653600 - 39653504
Alignment:
Q  110 caggagtcgctcattgtcatgccttgcgcaattatgatcactcctcgccctcatcagcctcaggtgttacatgcccaccagtttccgcttggttcgt 206  Q
    |||||| ||||||||||| ||||||| |||     || |||||| | ||||| |||||||  ||||||||||||||||||| |||||||||||||||    
T  39653600 caggagccgctcattgtcgtgccttgtgcaccggcgaccactccccaccctcgtcagccttgggtgttacatgcccaccagcttccgcttggttcgt 39653504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 148 - 206
Target Start/End: Complemental strand, 16811323 - 16811265
Alignment:
Q  148 cactcctcgccctcatcagcctcaggtgttacatgcccaccagtttccgcttggttcgt 206  Q
    |||||| | ||||| |||||||  ||||||||||||||||||| |||||||||||||||    
T  16811323 cactccccaccctcgtcagccttgggtgttacatgcccaccagcttccgcttggttcgt 16811265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 13 - 135
Target Start/End: Complemental strand, 39653240 - 39653119
Alignment:
Q  13 aattcttataagcattcctttgaccatttagtctcatatgtgcatggccttacgaaccctctcattccagtgtgaattcggtttgtctaaaagctaccag 112  Q
    ||||||||||||| ||||||  |||||  |||| ||||  |||| ||||| | ||||||||||||||| ||||| |||| |||  |||| |||||  |||    
T  39653240 aattcttataagctttccttcaaccatgcagtcccatacctgcacggcctcaggaaccctctcattccggtgtg-attcagttcctctagaagctgtcag 39653142  T
Q  113 gagtcgctcattgtcatgccttg 135  Q
    ||| ||||||||||| |||||||    
T  39653141 gagccgctcattgtcgtgccttg 39653119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 169
Target Start/End: Complemental strand, 14814025 - 14813870
Alignment:
Q  13 aattcttataagcattcctttgaccatttagtctcatatgtgcatggccttacgaaccctctcattccagtgtgaattcggtttgtctaaaagctaccag 112  Q
    |||| |||||||| ||||||| |||||  |||||||||  | || ||||| | ||||||||||||||| ||||| ||||||||  |||| |||||  |||    
T  14814025 aattattataagccttcctttaaccatgcagtctcatacctacacggcctcaggaaccctctcattccggtgtg-attcggttcctctagaagctctcag 14813927  T
Q  113 gagtcgctcattgtcatgccttgcgcaattatgatcactcctcgccctcatcagcct 169  Q
     || |||| |||||| ||||||| |||     || |||||||||||||| |||||||    
T  14813926 aagccgctaattgtcgtgccttgtgcaccggcgaccactcctcgccctcgtcagcct 14813870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 204
Target Start/End: Original strand, 25238875 - 25238931
Alignment:
Q  148 cactcctcgccctcatcagcctcaggtgttacatgcccaccagtttccgcttggttc 204  Q
    |||||| ||||||| |||||||  ||||||||||||||||||| || ||||||||||    
T  25238875 cactccccgccctcgtcagccttgggtgttacatgcccaccagctttcgcttggttc 25238931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 186
Target Start/End: Complemental strand, 41473963 - 41473925
Alignment:
Q  148 cactcctcgccctcatcagcctcaggtgttacatgccca 186  Q
    |||||| ||||||||||||||||||| ||||||||||||    
T  41473963 cactccccgccctcatcagcctcaggcgttacatgccca 41473925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 155 - 204
Target Start/End: Original strand, 25802767 - 25802816
Alignment:
Q  155 cgccctcatcagcctcaggtgttacatgcccaccagtttccgcttggttc 204  Q
    ||||||| |||||||  |||||||||||||||| || |||||||||||||    
T  25802767 cgccctcgtcagccttgggtgttacatgcccactagcttccgcttggttc 25802816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 3e-16; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 13 - 180
Target Start/End: Complemental strand, 20850397 - 20850231
Alignment:
Q  13 aattcttataagcattcctttgaccatttagtctcatatgtgcatggccttacgaaccctctcattccagtgtgaattcggtttgtctaaaagctaccag 112  Q
    ||||||||||||| ||||||  |||||  |||| ||||  |||| ||||| | ||||||||||||||| ||||| ||||||||  |||| |||||  |||    
T  20850397 aattcttataagccttccttcaaccatgcagtcccatacctgcacggcctcatgaaccctctcattccggtgtg-attcggttcctctagaagctgtcag 20850299  T
Q  113 gagtcgctcattgtcatgccttgcgcaattatgatcactcctcgccctcatcagcctcaggtgttaca 180  Q
    ||| ||||||||||| ||||||| |||     || |||||||||||||| |||||||  |||||||||    
T  20850298 gagccgctcattgtcgtgccttgtgcaccggcgaccactcctcgccctcgtcagccttgggtgttaca 20850231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 194
Target Start/End: Complemental strand, 21312047 - 21311867
Alignment:
Q  13 aattcttataagcattcctttgaccatttagtctcatatgtgcatggccttacgaaccctctcattccagtgtgaattcggtttgtctaaaagctaccag 112  Q
    ||||||||||||| ||||||  |||||  |||||||||  ||||  |||| | ||||||||||||||  |||||| ||| |||  | || |||||| | |    
T  21312047 aattcttataagccttccttcaaccatgcagtctcatacctgcacagcctcatgaaccctctcattctggtgtga-ttcagttcctttagaagctatcgg 21311949  T
Q  113 gagtcgctcattgtcatgccttgcgcaattatgatcactcctcgccctcatcagcctcaggtgttacatgcccaccagtttc 194  Q
    ||||||||||||||  ||||||| ||| |   || |||| | ||||||| |||||||  |||||||||||||||||| ||||    
T  21311948 gagtcgctcattgttgtgccttgtgcactggcgaccacttcccgccctcgtcagccttgggtgttacatgcccaccaatttc 21311867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 11 - 107
Target Start/End: Original strand, 31821760 - 31821855
Alignment:
Q  11 ataattcttataagcattcctttgaccatttagtctcatatgtgcatggccttacgaaccctctcattccagtgtgaattcggtttgtctaaaagct 107  Q
    ||||||||||||||||||||||  ||||| ||||||||||  | |||||||| | || ||||||||||||  |||| ||||||||| |||| |||||    
T  31821760 ataattcttataagcattccttcaaccatgtagtctcatacctacatggcctcatgatccctctcattccgatgtg-attcggtttctctagaagct 31821855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 140
Target Start/End: Original strand, 20896758 - 20896884
Alignment:
Q  13 aattcttataagcattcctttgaccatttagtctcatatgtgcatggccttacgaaccctctcattccagtgtgaattcggtttgtctaaaagctaccag 112  Q
    ||||||||||||| ||||||  ||||| ||||||||||  | || ||||| | || ||||||||||||  |||| |||||| ||||||| ||| |  | |    
T  20896758 aattcttataagccttccttcaaccatgtagtctcatacctacacggcctaaggatccctctcattccgatgtg-attcggcttgtctagaagttgtcgg 20896856  T
Q  113 gagtcgctcattgtcatgccttgcgcaa 140  Q
    ||| ||||||||||||||||||| ||||    
T  20896857 gagccgctcattgtcatgccttgtgcaa 20896884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 148 - 189
Target Start/End: Complemental strand, 9352029 - 9351988
Alignment:
Q  148 cactcctcgccctcatcagcctcaggtgttacatgcccacca 189  Q
    |||||| |||||||||||||||| ||||||||||||||||||    
T  9352029 cactccccgccctcatcagcctcgggtgttacatgcccacca 9351988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 148 - 189
Target Start/End: Original strand, 17731293 - 17731334
Alignment:
Q  148 cactcctcgccctcatcagcctcaggtgttacatgcccacca 189  Q
    |||||| ||||||||||||||||||| |||||||||||||||    
T  17731293 cactccccgccctcatcagcctcaggcgttacatgcccacca 17731334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 135
Target Start/End: Original strand, 20126253 - 20126373
Alignment:
Q  14 attcttataagcattcctttgaccatttagtctcatatgtgcatggccttacgaaccctctcattccagtgtgaattcggtttgtctaaaagctaccagg 113  Q
    |||||||||||| ||||||  ||||| ||||||||||  | ||  |||||| || ||||||||||||  ||||| ||| | ||||||| ||| |  ||||    
T  20126253 attcttataagccttccttcaaccatgtagtctcatacctacacagccttaggatccctctcattccgatgtga-ttcagcttgtctagaagttgtcagg 20126351  T
Q  114 agtcgctcattgtcatgccttg 135  Q
    || |||||||||||||||||||    
T  20126352 agccgctcattgtcatgccttg 20126373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 206
Target Start/End: Complemental strand, 7912276 - 7912218
Alignment:
Q  148 cactcctcgccctcatcagcctcaggtgttacatgcccaccagtttccgcttggttcgt 206  Q
    |||||| |||||||||| || || || |||||||||||||||| || ||||||||||||    
T  7912276 cactccccgccctcatctgcgtcgggcgttacatgcccaccagctttcgcttggttcgt 7912218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 189
Target Start/End: Original strand, 13191700 - 13191734
Alignment:
Q  155 cgccctcatcagcctcaggtgttacatgcccacca 189  Q
    ||||||||||||||||||| |||||||||||||||    
T  13191700 cgccctcatcagcctcaggcgttacatgcccacca 13191734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 178
Target Start/End: Complemental strand, 3652562 - 3652398
Alignment:
Q  13 aattcttataagcattcctttgaccatttagtctcatatgtgcatggccttacgaaccctctcattccagtgtgaattcggtttgtctaaaagctaccag 112  Q
    ||||||||||||| ||||||  ||||| ||||| ||||  | ||  |||| | || ||||||||||||  ||||| |||||||  |||| |||||  | |    
T  3652562 aattcttataagccttccttcaaccatgtagtcccatacctacacagcctcaggatccctctcattccgatgtga-ttcggttcctctagaagctgtcgg 3652464  T
Q  113 gagtcgctcattgtcatgccttgcgcaattatgatcactcctcgccctcatcagcctcaggtgtta 178  Q
    ||| ||||||||||| ||||||| |||   | || |||||| |||||||||||||||  |||||||    
T  3652463 gagccgctcattgtcgtgccttgtgcaccgacgaccactccccgccctcatcagccttgggtgtta 3652398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 148 - 189
Target Start/End: Complemental strand, 13492755 - 13492714
Alignment:
Q  148 cactcctcgccctcatcagcctcaggtgttacatgcccacca 189  Q
    |||||| |||||||||||||||| || |||||||||||||||    
T  13492755 cactccccgccctcatcagcctcgggcgttacatgcccacca 13492714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 148 - 189
Target Start/End: Complemental strand, 16519935 - 16519894
Alignment:
Q  148 cactcctcgccctcatcagcctcaggtgttacatgcccacca 189  Q
    |||||| |||||||||||||||| || |||||||||||||||    
T  16519935 cactccccgccctcatcagcctcgggcgttacatgcccacca 16519894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 135
Target Start/End: Complemental strand, 32292903 - 32292839
Alignment:
Q  71 ctctcattccagtgtgaattcggtttgtctaaaagctaccaggagtcgctcattgtcatgccttg 135  Q
    ||||||||||| |||||||| |||||| ||| ||| | |||||||  ||||||||||||| ||||    
T  32292903 ctctcattccaatgtgaatttggtttgcctagaagatgccaggagctgctcattgtcatgtcttg 32292839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0243 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0243
Description:

Target: scaffold0243; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 180
Target Start/End: Complemental strand, 1296 - 1130
Alignment:
Q  13 aattcttataagcattcctttgaccatttagtctcatatgtgcatggccttacgaaccctctcattccagtgtgaattcggtttgtctaaaagctaccag 112  Q
    ||||||||||||| ||||||  |||||  |||| ||||  |||||||||| | ||||| ||||||||| ||||| ||||||||  |||| ||| |  |||    
T  1296 aattcttataagccttccttcaaccatgcagtcccatacctgcatggcctcaggaaccgtctcattccggtgtg-attcggttcctctagaagttgtcag 1198  T
Q  113 gagtcgctcattgtcatgccttgcgcaattatgatcactcctcgccctcatcagcctcaggtgttaca 180  Q
    ||| ||||||||||| ||||||| |||     || |||||| ||||||| |||||||  |||||||||    
T  1197 gagccgctcattgtcgtgccttgtgcaccggcgaccactccccgccctcgtcagccttgggtgttaca 1130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 148 - 206
Target Start/End: Complemental strand, 245481 - 245423
Alignment:
Q  148 cactcctcgccctcatcagcctcaggtgttacatgcccaccagtttccgcttggttcgt 206  Q
    |||||| |||||||||||||||| |||||||||| || ||||  |||||||||||||||    
T  245481 cactccccgccctcatcagcctcgggtgttacatccctaccatcttccgcttggttcgt 245423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0442 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0442
Description:

Target: scaffold0442; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 163 - 206
Target Start/End: Complemental strand, 2431 - 2388
Alignment:
Q  163 tcagcctcaggtgttacatgcccaccagtttccgcttggttcgt 206  Q
    ||||||| |||||||||||||||||||| ||||| |||||||||    
T  2431 tcagccttaggtgttacatgcccaccagcttccgtttggttcgt 2388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 135
Target Start/End: Complemental strand, 23749 - 23628
Alignment:
Q  13 aattcttataagcattcctttgaccatttagtctcatatgtgcatggccttacgaaccctctcattccagtgtgaattcggtttgtctaaaagctaccag 112  Q
    ||||||||||||| ||||||  |||||  |||| ||||  |||| ||||| | ||||||||||||| | ||||| ||||||||  |||| | || | |||    
T  23749 aattcttataagccttccttcaaccatgcagtcccatacctgcacggcctcaagaaccctctcatttcggtgtg-attcggttcctctagatgccatcag 23651  T
Q  113 gagtcgctcattgtcatgccttg 135  Q
    ||| ||||||||||| |||||||    
T  23650 gagccgctcattgtcgtgccttg 23628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 148 - 189
Target Start/End: Complemental strand, 105686 - 105645
Alignment:
Q  148 cactcctcgccctcatcagcctcaggtgttacatgcccacca 189  Q
    |||||| |||||||||||||||  ||||||||||||||||||    
T  105686 cactccccgccctcatcagccttgggtgttacatgcccacca 105645  T

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Target: scaffold0020 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 148 - 189
Target Start/End: Original strand, 107643 - 107684
Alignment:
Q  148 cactcctcgccctcatcagcctcaggtgttacatgcccacca 189  Q
    |||||| || ||||||||||||| ||||||||||||||||||    
T  107643 cactccccgtcctcatcagcctcgggtgttacatgcccacca 107684  T

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Target: scaffold0557 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0557
Description:

Target: scaffold0557; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 206
Target Start/End: Complemental strand, 682 - 634
Alignment:
Q  158 cctcatcagcctcaggtgttacatgcccaccagtttccgcttggttcgt 206  Q
    |||| ||||||| |||||||||||||||||||| ||||  |||||||||    
T  682 cctcgtcagccttaggtgttacatgcccaccagcttccatttggttcgt 634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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