View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1830_high_23 (Length: 209)
Name: NF1830_high_23
Description: NF1830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1830_high_23 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 113; Significance: 2e-57; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 68 - 209
Target Start/End: Original strand, 41625891 - 41626032
Alignment:
| Q |
68 |
atatgtgttctcgtcacatc---actaaaatttcatatctattacatcagtctcattattcttctctattttaaggtgtataattgagatagatgttcaa |
164 |
Q |
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| T |
41625891 |
atatgtgttctcgtcacatcatcactaaaatttcatatctattacatcagtctcattattcttctctattttaaggtgtataattgagatagatgttcaa |
41625990 |
T |
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| Q |
165 |
aaattatttcctatataatagtatcatatatatgatgacatatac |
209 |
Q |
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| T |
41625991 |
aaattattttctatataa---tatcatatatatgatgacatatac |
41626032 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 10 - 52
Target Start/End: Original strand, 41625826 - 41625868
Alignment:
| Q |
10 |
attaccattgattttgacacactcattgaaatttcaacctctc |
52 |
Q |
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| T |
41625826 |
attaccattgattttgacacactcattgaaatttcaacctctc |
41625868 |
T |
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