View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1830_high_4 (Length: 416)
Name: NF1830_high_4
Description: NF1830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1830_high_4 |
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| [»] scaffold0128 (1 HSPs) |
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| [»] scaffold0267 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 357; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 19 - 407
Target Start/End: Complemental strand, 13784392 - 13784004
Alignment:
| Q |
19 |
gaatcttggactcggttggtgaatgtcagttatgtgcatctaaaattttatgatattgtgcctgattttctgttgttgcctgtgtgtctgtccgaaaatg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||| |
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| T |
13784392 |
gaatcttggactcggttggtgaatgtcagttatgtgcatctaaaattttatgatattgtgcctgattttctgctgttgcctttgtgtttgtccgaaaatg |
13784293 |
T |
|
| Q |
119 |
gagatgtcatgttgctcgctaacaaagaagaacgtttagatcttgttattatgtataatcggagagatgatatagttgaatttcttcaatttcctaacaa |
218 |
Q |
| |
|
|||||||| ||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13784292 |
gagatgtcctgttgcttgctaacaaagaagaacttttagatcttgttattatgtataatcggagagatgatatagttgaatttcttcaatttcctaacaa |
13784193 |
T |
|
| Q |
219 |
caaaatttgggcggctgatgaacatatgcatagcttggttttgcctcgttctcatccacattaagctcctctacatcaattgtttgtttttagaactttt |
318 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13784192 |
caaaatttgggcggccgatgaacatatgcatagcttggttttgcctcattctcatccacattaagctcctctacatcaattgtttgtttttagaactttt |
13784093 |
T |
|
| Q |
319 |
gctaaactatgaaagtggcgtgatggctatcgatggttccttaaatgtgttttccttagctagtttgactattttgttgtatgatgatg |
407 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13784092 |
gctaaactatgaaagtggcgtgatggctatcgatggttccttaaatgtgttttccttagctagtttgactattttgttgtatgatgatg |
13784004 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 357 - 403
Target Start/End: Complemental strand, 13784001 - 13783955
Alignment:
| Q |
357 |
ccttaaatgtgttttccttagctagtttgactattttgttgtatgat |
403 |
Q |
| |
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|||| ||||||||||||||||||||||||| |||||||||||||||| |
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| T |
13784001 |
ccttcaatgtgttttccttagctagtttgagtattttgttgtatgat |
13783955 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0128 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: scaffold0128
Description:
Target: scaffold0128; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 19 - 403
Target Start/End: Complemental strand, 34055 - 33664
Alignment:
| Q |
19 |
gaatcttggactcggttggtgaatgtcagttatgtgcatctaaaattttatgatattgtgcctgattttctgttgttgcctgtgtgtctgtccgaaaatg |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||||||||| |
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| T |
34055 |
gaatcttggactcggttggtgaatgtcagttatgtgcatctaaaattttatgatattgcgcctaattttctgttgttgcctgtgtgtttgtccgaaaatg |
33956 |
T |
|
| Q |
119 |
gagatgtcatgttgctcgctaacaaagaagaa---cgtttagatcttgttattatgtataatcggagagatgatatagttgaatttcttcaatttcctaa |
215 |
Q |
| |
|
|||||||| ||||||| |||| ||||||| || | |||| || ||||||||||||||||||||||||||||||||||| ||||||||| | ||||||| |
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|
| T |
33955 |
gagatgtcctgttgctggctaccaaagaaaaagatcttttaaattttgttattatgtataatcggagagatgatatagttcaatttcttcgacttcctaa |
33856 |
T |
|
| Q |
216 |
caacaaaatttgggcggctgatgaacatatgcatagcttggttttgcctcgttctcatccacattaagctcctctacatcaattgtttgtttttagaact |
315 |
Q |
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|
|||| ||||||||||||| ||||||||||||| ||||||||||||||||||| |||||||||||||||||||| ||| ||||||||||||||| | |||| |
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|
| T |
33855 |
caaccaaatttgggcggccgatgaacatatgcgtagcttggttttgcctcgtcctcatccacattaagctcctatacttcaattgtttgttttcaaaact |
33756 |
T |
|
| Q |
316 |
tttgctaaactatgaaagtggcgtgatggctatcgatggttccttaaatgtgttttcct----tagctagtttgactattttgttgtatgat |
403 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| | ||||||||||||||||||||||||||||| |
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| T |
33755 |
tttgctaaactatgaaagtggcgtgatggctatcgatgggttcttaaatgtgttttcattagctagctagtttgactattttgttgtatgat |
33664 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 206; Significance: 1e-112; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 19 - 403
Target Start/End: Complemental strand, 40794204 - 40793817
Alignment:
| Q |
19 |
gaatcttggactcggttggtgaatgtcagttatgtgcatctaaaattttatgatattgtgcctgattttctgttgttgcctgtgtgtctgtccgaaaatg |
118 |
Q |
| |
|
|||||||||||||||||| || |||| | |||||||||||| |||||| ||||||||||||| |||| |||||||||| |||| |||||||||| ||| |
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|
| T |
40794204 |
gaatcttggactcggttgatggatgttatttatgtgcatcttaaatttggtgatattgtgcctagttttatgttgttgccagtgtatctgtccgaagatg |
40794105 |
T |
|
| Q |
119 |
gagatgtcatgttgctcgctaacaaagaagaacgt---ttagatcttgttattatgtataatcggagagatgatatagttgaatttcttcaatttcctaa |
215 |
Q |
| |
|
||||||| ||||||| |||| ||| |||| | | |||||| |||||||||||||||||| || ||||||||||||||||||||||||| ||||||| |
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| T |
40794104 |
aagatgtcctgttgctggctagcaacgaagtagatattttagattttgttattatgtataatcagatagatgatatagttgaatttcttcaacttcctaa |
40794005 |
T |
|
| Q |
216 |
caacaaaatttgggcggctgatgaacatatgcatagcttggttttgcctcgttctcatccacattaagctcctctacatcaattgtttgtttttagaact |
315 |
Q |
| |
|
||| |||||| |||||| ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| ||||||||||||||| |||||| |
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| T |
40794004 |
caatcaaatttaggcggccgatgaacatatgcatagcttgattttgcctcgtcatcatccacattaagctcctctatgtcaattgtttgttttcagaact |
40793905 |
T |
|
| Q |
316 |
tttgctaaactatgaaagtggcgtgatggctatcgatggttccttaaatgtgttttccttagctagtttgactattttgttgtatgat |
403 |
Q |
| |
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||||||| ||||||||||||| |||||||||||||||| ||||||||||||||||| ||| | || |||||||||||||||||||||| |
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| T |
40793904 |
tttgctagactatgaaagtggtgtgatggctatcgatgattccttaaatgtgtttttcttgggtaatttgactattttgttgtatgat |
40793817 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 90 - 403
Target Start/End: Complemental strand, 33637609 - 33637299
Alignment:
| Q |
90 |
gttgttgcctgtgtgtctgtccgaaaatggagatgtcatgttgctcgctaacaaagaagaacgtttagatcttgttattatgtataatcggagagatgat |
189 |
Q |
| |
|
|||||| || || ||||| || ||||||||| ||||||||||||| |||| ||||| || ||| ||| | ||| |||||||||| ||||||||||| |
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| T |
33637609 |
gttgtttccggtttgtctctctgaaaatggaaatgtcatgttgctggctagcaaaggagc---ttttgatgatattagtatgtataataggagagatgat |
33637513 |
T |
|
| Q |
190 |
atagttgaatttcttcaatttcctaacaacaaaatttgggcggctgatgaacatatgcatagcttggttttgcctcgttctcatccacattaagctcctc |
289 |
Q |
| |
|
| || |||| | || || ||| | ||||| |||||||| ||||||||||||||| | ||||||||||| || ||| ||| ||||||||||||| || |
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|
| T |
33637512 |
agagctgaacatattgaacttcttgacaaccaaatttggtatgctgatgaacatatgaagagcttggtttttccccgtcctcttccacattaagcttcta |
33637413 |
T |
|
| Q |
290 |
tacatcaattgtttgtttttagaacttttgctaaactatgaaagtggcgtgatggctatcgatggttccttaaatgtgttttccttagctagtttgacta |
389 |
Q |
| |
|
| || ||||||||||| ||| ||| || || || || |||| | |||||| |||| |||||||||||| ||||||||| ||| |||||| |||| |
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| T |
33637412 |
tgcaacaattgtttgtattttgaatttatgttaggtcgtgcaagtagtgtgatgactattaatggttccttaattgtgttttcaatagatagtttaacta |
33637313 |
T |
|
| Q |
390 |
ttttgttgtatgat |
403 |
Q |
| |
|
|||||||| ||||| |
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|
| T |
33637312 |
ttttgttggatgat |
33637299 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0267 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: scaffold0267
Description:
Target: scaffold0267; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 232 - 403
Target Start/End: Original strand, 13632 - 13804
Alignment:
| Q |
232 |
gctgatgaacatatgcatagcttggttttgcctcgttctcatccacattaagctcctctacatcaattgtttgttttt-agaacttttgctaaactatga |
330 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| || ||| |||||||||| ||| | | || ||| ||||||||||| ||| || || || | || |
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|
| T |
13632 |
gctgatgaacatatgcagagcttggttttgccttgtcctcgtccacattaatctcgtatgcaacaaatgtttgtttttctgaatttatgttaggttgtgc |
13731 |
T |
|
| Q |
331 |
aagtggcgtgatggctatcgatggttccttaaatgtgttttccttagctagtttgactattttgttgtatgat |
403 |
Q |
| |
|
| |||| |||| |||| |||||||| |||| | |||||||||||| ||||||||||||||||||| ||||| |
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|
| T |
13732 |
atttggcatgatatctattgatggttctttaattatgttttccttagatagtttgactattttgttggatgat |
13804 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0267; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 126
Target Start/End: Original strand, 13495 - 13532
Alignment:
| Q |
89 |
tgttgttgcctgtgtgtctgtccgaaaatggagatgtc |
126 |
Q |
| |
|
|||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
13495 |
tgttgttgccggtgtgtctatccgaaaatggagatgtc |
13532 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 232 - 403
Target Start/End: Original strand, 3838151 - 3838323
Alignment:
| Q |
232 |
gctgatgaacatatgcatagcttggttttgcctcgttctcatccacattaagctcctctacatcaattgtttgttttt-agaacttttgctaaactatga |
330 |
Q |
| |
|
||||| ||||||||||| ||||||||||||||| || |||||||||||||| ||| | | || ||| ||||||||||| ||| || || || | || |
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|
| T |
3838151 |
gctgaggaacatatgcagagcttggttttgccttgtcctcatccacattaatctcgtatgcaacaactgtttgtttttctgaatttatgttaggttttgc |
3838250 |
T |
|
| Q |
331 |
aagtggcgtgatggctatcgatggttccttaaatgtgttttccttagctagtttgactattttgttgtatgat |
403 |
Q |
| |
|
| |||| |||| |||| |||||||| |||| | |||||||||||| |||||||||||||||| || ||||| |
|
|
| T |
3838251 |
atttggcatgatatctattgatggttctttaattatgttttccttagatagtttgactattttgctggatgat |
3838323 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 350 - 403
Target Start/End: Complemental strand, 20475685 - 20475632
Alignment:
| Q |
350 |
gatggttccttaaatgtgttttccttagctagtttgactattttgttgtatgat |
403 |
Q |
| |
|
||||||| ||||| |||||||||||| |||||||| || ||||||||| ||||| |
|
|
| T |
20475685 |
gatggttacttaattgtgttttccttggctagttttacaattttgttggatgat |
20475632 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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