View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1830_high_5 (Length: 409)
Name: NF1830_high_5
Description: NF1830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1830_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 11 - 390
Target Start/End: Original strand, 1560822 - 1561195
Alignment:
| Q |
11 |
cacagagcaaagatgaacaaccaacaagatatgtggcacatgaacacacaaactaaaggtgaacatccaacatggtccatgacacaaacctcccaagcac |
110 |
Q |
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| T |
1560822 |
cacagagcaaagatgaacaaccaacaagttatgtgccacatgaacacacagactaaaggtgaacatccaacatggtccatgacacaaaccttccaagcac |
1560921 |
T |
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| Q |
111 |
agatggacgattgagaagtagaagccaaaccatacaaacacaatcgggccccaaaacccacaccatcaaactcgatcaataccagcacatgagcagatgc |
210 |
Q |
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| T |
1560922 |
aaatggacgactgagaagtagaagccaaaccatacaaacacaatcgggccccaaagcccacaccatcaaactcgatca------gcacatgagtagatgc |
1561015 |
T |
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| Q |
211 |
taccaaggttttttaccaaggaaccacttgcacaaagaaagtttcaccctatgcattagatgctcgacggaaagagatccatcaacaaagattatatcat |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| |
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| T |
1561016 |
taccaaggttttttaccaaggaaccacttgcacaaagaaagtttcaccctatgcatcagatgctcgacggaaagagatccaccaacaaagattatatcat |
1561115 |
T |
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| Q |
311 |
tgggtgatctttcaggttcttctatcttgtctactcgacactagctatgggtcaaacctaacaatatatgtcacacgtaa |
390 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1561116 |
tgggtgagctttcaggttcttctatcttgtctactcgacactagctatgggtcaaacctaacaatatatgtcacacgtaa |
1561195 |
T |
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