View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1830_low_10 (Length: 300)
Name: NF1830_low_10
Description: NF1830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1830_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 40 - 285
Target Start/End: Complemental strand, 51762200 - 51761955
Alignment:
| Q |
40 |
cagttattggaattggagtgaggcttatgattcatgctttccccaagacgattgatcaagtagagagcgttacttataaacatagatgcatcggtaactt |
139 |
Q |
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| T |
51762200 |
cagttattggaattggagtgaggcttttgattcatgctttccccaagacgattgatcaagtagagagcgttacttataaacatagatgcatcggtaactt |
51762101 |
T |
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| Q |
140 |
ttcttttcacctccaacttcaccttcttttcagcatcacttctgttcaaaccgttaatacaagagttaccgttggtaaaagcagtgctggcccatgtttg |
239 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51762100 |
ttcttttcacctccaacttcaccttcttttcagcatcgcttctgttcaaaccgttaatacaagagttaccgttggtaaaagcagtgctggcccatgtttg |
51762001 |
T |
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| Q |
240 |
agcgttactcatttgccactcaaacgttcccatgcgaagatgtttt |
285 |
Q |
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| T |
51762000 |
agcgttactcatttgccactcaaacgttcccatgcgaagatgtttt |
51761955 |
T |
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