View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1830_low_15 (Length: 250)
Name: NF1830_low_15
Description: NF1830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1830_low_15 |
 | |
|
| [»] scaffold0067 (1 HSPs) |
| | |
|
| [»] scaffold0912 (1 HSPs) |
| | |
|
| [»] scaffold0043 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 24)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 28128233 - 28128011
Alignment:
| Q |
18 |
ctttggccattgtagtttttcctgtgccccccatcccttgcaacccggttatataactgttgtcatctttcagagcatcaaaaagctctttgtatttgga |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28128233 |
ctttggccattgtagtttttcctgtgccccccatcccttgcaacccggttatataactgttgtcatctttcagagcatcaaaaagctctttgtatttgga |
28128134 |
T |
|
| Q |
118 |
ttttctactttcaaaagaaatatagtctctggatgaataacgttcaacatctggaagaggagcagggagtccaattacaagatcctttccagtttcaatc |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
28128133 |
ttttctactttcaaaagaaatatagtctctggatgaataacgttcaacatctggaagaggagcagggagtccaattacaagatcctttccattttcaatc |
28128034 |
T |
|
| Q |
218 |
aatcttttaatttgctccttctt |
240 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
28128033 |
aatcttttaatttgctccttctt |
28128011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 19 - 240
Target Start/End: Complemental strand, 28142163 - 28141942
Alignment:
| Q |
19 |
tttggccattgtagtttttcctgtgccccccatcccttgcaacccggttatataactgttgtcatctttcagagcatcaaaaagctctttgtatttggat |
118 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28142163 |
tttggccaatgtagtttttcctgtgccccccatcccttgcaacccggttatataactgttgtcatctttcagagcatcaaaaagctctttgtatttggat |
28142064 |
T |
|
| Q |
119 |
tttctactttcaaaagaaatatagtctctggatgaataacgttcaacatctggaagaggagcagggagtccaattacaagatcctttccagtttcaatca |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
28142063 |
tttctactttcaaaagaaatatagtctctggatgaataacgttcaacatctggaagaggagcagggagtccaattacaagatcctttccattttcaatca |
28141964 |
T |
|
| Q |
219 |
atcttttaatttgctccttctt |
240 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
28141963 |
atcttttaatttgctccttctt |
28141942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 28045717 - 28045495
Alignment:
| Q |
18 |
ctttggccattgtagtttttcctgtgccccccatcccttgcaacccggttatataactgttgtcatctttcagagcatcaaaaagctctttgtatttgga |
117 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| |||||||||||||||||| | |
|
|
| T |
28045717 |
ctttggccaatgtagtttttcctgtgccccccatcccttgcaacctggttatataattgttgtcatctttcagagcatctaaaagctctttgtatttgaa |
28045618 |
T |
|
| Q |
118 |
ttttctactttcaaaagaaatatagtctctggatgaataacgttcaacatctggaagaggagcagggagtccaattacaagatcctttccagtttcaatc |
217 |
Q |
| |
|
|| |||||||||||||||||||||| | ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
28045617 |
ttccctactttcaaaagaaatatagtgtttggatgaataacgttcaacatctggaagatgaccagggagtccaattacaagatcctttctagtttcaatt |
28045518 |
T |
|
| Q |
218 |
aatcttttaatttgctccttctt |
240 |
Q |
| |
|
||| ||||||||| ||||||||| |
|
|
| T |
28045517 |
aattttttaattttctccttctt |
28045495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 25 - 240
Target Start/End: Original strand, 28474138 - 28474353
Alignment:
| Q |
25 |
cattgtagtttttcctgtgccccccatcccttgcaacccggttatataactgttgtcatctttcagagcatcaaaaagctctttgtatttggattttcta |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |||||||||||||||||||||| ||| |
|
|
| T |
28474138 |
cattgtagtttttcctgtgccccccatcccttgcaacccggttataaaattgttgtcatctttcagagcatctaaaagctctttgtatttggattcccta |
28474237 |
T |
|
| Q |
125 |
ctttcaaaagaaatatagtctctggatgaataacgttcaacatctggaagaggagcagggagtccaattacaagatcctttccagtttcaatcaatcttt |
224 |
Q |
| |
|
|||| ||||| |||||||| | ||||||||| |||||||||||||||||| ||||||||| ||||||| ||| ||||||||||||| |||||||||| |
|
|
| T |
28474238 |
cttttaaaaggaatatagtgttgggatgaatagcgttcaacatctggaagacgagcagggaatccaatttgaagttcctttccagtttgaatcaatcttg |
28474337 |
T |
|
| Q |
225 |
taatttgctccttctt |
240 |
Q |
| |
|
|||| ||||||||||| |
|
|
| T |
28474338 |
taatctgctccttctt |
28474353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 21 - 240
Target Start/End: Original strand, 28499586 - 28499805
Alignment:
| Q |
21 |
tggccattgtagtttttcctgtgccccccatcccttgcaacccggttatataactgttgtcatctttcagagcatcaaaaagctctttgtatttggattt |
120 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |||||| |||||||||||||||||||||| |
|
|
| T |
28499586 |
tggccaatgtagtttttcctgtgccccccatcccttgcaacccggttataaaattgttgtcatctttcatagcatctaaaagctctttgtatttggattc |
28499685 |
T |
|
| Q |
121 |
tctactttcaaaagaaatatagtctctggatgaataacgttcaacatctggaagaggagcagggagtccaattacaagatcctttccagtttcaatcaat |
220 |
Q |
| |
|
||||||| ||||| |||||||| | |||||||||||||||||||||||||||| | ||||||||| ||||| ||| | ||||||||||||||| ||| |
|
|
| T |
28499686 |
cctacttttaaaaggaatatagtgttgggatgaataacgttcaacatctggaagacgggcagggagttcaattgaaagttgctttccagtttcaattaat |
28499785 |
T |
|
| Q |
221 |
cttttaatttgctccttctt |
240 |
Q |
| |
|
||||| |||||||||||||| |
|
|
| T |
28499786 |
cttttcatttgctccttctt |
28499805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 28176325 - 28176103
Alignment:
| Q |
18 |
ctttggccattgtagtttttcctgtgccccccatcccttgcaacccggttatataactgttgtcatctttcagagcatcaaaaagctctttgtatttgga |
117 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| |||| ||||||| ||| |||| ||||||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
28176325 |
ctttggccaatgtagtttttcctgtgccccccattcctttcaacccgattacataattgttgtcatctttcaatgcatccaaaagctctttgtatttgga |
28176226 |
T |
|
| Q |
118 |
ttttctactttcaaaagaaatatagtctctggatgaataacgttcaacatctggaagaggagcagggagtccaattacaagatcctttccagtttcaatc |
217 |
Q |
| |
|
|| ||||||| ||||| |||||||| | ||||||||||||||||||| |||||||| ||||||||||||||||| ||| ||||||||||||||||| |
|
|
| T |
28176225 |
ttccctacttttaaaaggaatatagtgttgggatgaataacgttcaacacctggaagacgagcagggagtccaattgaaagttcctttccagtttcaatt |
28176126 |
T |
|
| Q |
218 |
aatcttttaatttgctccttctt |
240 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
28176125 |
aatcttttaatttgctccttctt |
28176103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 18 - 232
Target Start/End: Original strand, 27466185 - 27466399
Alignment:
| Q |
18 |
ctttggccattgtagtttttcctgtgccccccatcccttgcaacccggttatataactgttgtcatctttcagagcatcaaaaagctctttgtatttgga |
117 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||| |
|
|
| T |
27466185 |
ctttggccaatgtagtttttcctgtgccccccatcccttgcaacccggttatataattgttgcaatctttcagagcatctaaaagctctttgtatttgga |
27466284 |
T |
|
| Q |
118 |
ttttctactttcaaaagaaatatagtctctggatgaataacgttcaacatctggaagaggagcagggagtccaattacaagatcctttccagtttcaatc |
217 |
Q |
| |
|
|| |||||||||||||||||||||| ||||||||||| || |||||||||||| ||||||||||||||||| |||| ||||||| |||||||||| |
|
|
| T |
27466285 |
ttccctactttcaaaagaaatatagtgagaagatgaataacgctcgacatctggaagacgagcagggagtccaattgcaagttcctttctagtttcaatc |
27466384 |
T |
|
| Q |
218 |
aatcttttaatttgc |
232 |
Q |
| |
|
| ||||||||||| |
|
|
| T |
27466385 |
agctttttaatttgc |
27466399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 28077702 - 28077480
Alignment:
| Q |
18 |
ctttggccattgtagtttttcctgtgccccccatcccttgcaacccggttatataactgttgtcatctttcagagcatcaaaaagctctttgtatttgga |
117 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| |||| ||||||| ||| |||| ||||||||||||||| ||||| ||||||||||||| |||||| |
|
|
| T |
28077702 |
ctttggccaatgtagtttttcctgtgccccccattcctttcaacccgattacataattgttgtcatctttcaatgcatccaaaagctctttgtgtttgga |
28077603 |
T |
|
| Q |
118 |
ttttctactttcaaaagaaatatagtctctggatgaataacgttcaacatctggaagaggagcagggagtccaattacaagatcctttccagtttcaatc |
217 |
Q |
| |
|
|| ||||||| ||||| |||||||| | ||||||||||||||||||| |||||||| ||||||||||||||||| ||| ||||||||||||||||| |
|
|
| T |
28077602 |
ttccctacttttaaaaggaatatagtgttgggatgaataacgttcaacacctggaagacgagcagggagtccaattgaaagttcctttccagtttcaatt |
28077503 |
T |
|
| Q |
218 |
aatcttttaatttgctccttctt |
240 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
28077502 |
aatcttttaatttgctccttctt |
28077480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 21 - 240
Target Start/End: Complemental strand, 27996906 - 27996687
Alignment:
| Q |
21 |
tggccattgtagtttttcctgtgccccccatcccttgcaacccggttatataactgttgtcatctttcagagcatcaaaaagctctttgtatttggattt |
120 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| ||||||| ||| |||| ||||||||||||||| || || |||||||||||||||| ||||| |
|
|
| T |
27996906 |
tggccattctagtttttcctgtgccccccatccctatcaacccgattacataattgttgtcatctttcaatgcttccaaaagctctttgtattgggattc |
27996807 |
T |
|
| Q |
121 |
tctactttcaaaagaaatatagtctctggatgaataacgttcaacatctggaagaggagcagggagtccaattacaagatcctttccagtttcaatcaat |
220 |
Q |
| |
|
||||||| ||| | |||||||| | |||||||| |||||||||| |||||||||||||||||||||||||| ||| ||||||||||||||||||||| |
|
|
| T |
27996806 |
cctacttttaaatgtaatatagtgttgggatgaatgacgttcaacacctggaagaggagcagggagtccaattgaaagttcctttccagtttcaatcaat |
27996707 |
T |
|
| Q |
221 |
cttttaatttgctccttctt |
240 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
27996706 |
cttttaatttgctccttctt |
27996687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 28515150 - 28515372
Alignment:
| Q |
18 |
ctttggccattgtagtttttcctgtgccccccatcccttgcaacccggttatataactgttgtcatctttcagagcatcaaaaagctctttgtatttgga |
117 |
Q |
| |
|
||||||||| ||||||||||||||| ||||||||||||||||||||| |||||||| |||||||||||||||||||||| ||||||||||||||||| || |
|
|
| T |
28515150 |
ctttggccaatgtagtttttcctgttccccccatcccttgcaacccgattatataattgttgtcatctttcagagcatctaaaagctctttgtatttaga |
28515249 |
T |
|
| Q |
118 |
ttttctactttcaaaagaaatatagtctctggatgaataacgttcaacatctggaagaggagcagggagtccaattacaagatcctttccagtttcaatc |
217 |
Q |
| |
|
|| || |||| ||||| |||||||| | |||||||||||||||||||||||||||| | ||||||||| ||||| ||| | ||||||||||||||| |
|
|
| T |
28515250 |
ttccctgcttttaaaaggaatatagtgttgggatgaataacgttcaacatctggaagacgggcagggagttcaattgaaagttgctttccagtttcaatt |
28515349 |
T |
|
| Q |
218 |
aatcttttaatttgctccttctt |
240 |
Q |
| |
|
||| |||| |||| ||||||||| |
|
|
| T |
28515350 |
aatattttcattttctccttctt |
28515372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 17751154 - 17751376
Alignment:
| Q |
18 |
ctttggccattgtagtttttcctgtgccccccatcccttgcaacccggttatataactgttgtcatctttcagagcatcaaaaagctctttgtatttgga |
117 |
Q |
| |
|
|||| |||| ||||||||||||||||||||||||||||| ||||||| ||| |||| ||||||||||||||| | ||| ||||||||||||||| | || |
|
|
| T |
17751154 |
cttttgccaatgtagtttttcctgtgccccccatccctttcaacccgattacataattgttgtcatctttcaatgaatccaaaagctctttgtatcttga |
17751253 |
T |
|
| Q |
118 |
ttttctactttcaaaagaaatatagtctctggatgaataacgttcaacatctggaagaggagcagggagtccaattacaagatcctttccagtttcaatc |
217 |
Q |
| |
|
|| ||| |||| ||| | |||||||| | ||||||||||||||| |||||||||||| ||||||||||||||||| ||| |||||||||||||||||| |
|
|
| T |
17751254 |
ttctctgcttttaaagggaatatagtgttgggatgaataacgttctacatctggaagacgagcagggagtccaattgaaagttcctttccagtttcaatc |
17751353 |
T |
|
| Q |
218 |
aatcttttaatttgctccttctt |
240 |
Q |
| |
|
|||||| | |||||||| ||||| |
|
|
| T |
17751354 |
aatcttctgatttgctcgttctt |
17751376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 19052474 - 19052696
Alignment:
| Q |
18 |
ctttggccattgtagtttttcctgtgccccccatcccttgcaacccggttatataactgttgtcatctttcagagcatcaaaaagctctttgtatttgga |
117 |
Q |
| |
|
|||| |||| ||||||||||||||||||||||||||||| ||||||| ||| |||| ||||||||||||||| | ||| ||||||||||||||| | || |
|
|
| T |
19052474 |
cttttgccaatgtagtttttcctgtgccccccatccctttcaacccgattacataattgttgtcatctttcaatgaatccaaaagctctttgtatcttga |
19052573 |
T |
|
| Q |
118 |
ttttctactttcaaaagaaatatagtctctggatgaataacgttcaacatctggaagaggagcagggagtccaattacaagatcctttccagtttcaatc |
217 |
Q |
| |
|
|| ||| |||| ||| | |||||||| | ||||||||||||||| |||||||||||| ||||||||||||||||| ||| |||||||||||||||||| |
|
|
| T |
19052574 |
ttctctgcttttaaagggaatatagtgttgggatgaataacgttctacatctggaagacgagcagggagtccaattgaaagttcctttccagtttcaatc |
19052673 |
T |
|
| Q |
218 |
aatcttttaatttgctccttctt |
240 |
Q |
| |
|
|||||| | |||||||| ||||| |
|
|
| T |
19052674 |
aatcttctgatttgctcgttctt |
19052696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 21 - 240
Target Start/End: Original strand, 27436560 - 27436779
Alignment:
| Q |
21 |
tggccattgtagtttttcctgtgccccccatcccttgcaacccggttatataactgttgtcatctttcagagcatcaaaaagctctttgtatttggattt |
120 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| | |||||||||||||||||||| |||||||| | ||||| |||||||||||||||||||||| |
|
|
| T |
27436560 |
tggccaatgtagtttttcctgtgccccccatcccatacaacccggttatataactgtcttcatcttttaatgcatccaaaagctctttgtatttggattc |
27436659 |
T |
|
| Q |
121 |
tctactttcaaaagaaatatagtctctggatgaataacgttcaacatctggaagaggagcagggagtccaattacaagatcctttccagtttcaatcaat |
220 |
Q |
| |
|
|| |||| |||| |||||||| || |||||||| | |||| ||||||||| || ||||| || || ||||| ||| ||||||||||||||||||||| |
|
|
| T |
27436660 |
cctgcttttaaaatgaatatagtgtcgggatgaatgaagttctacatctggacgacgagcaaggggtgcaattgaaagttcctttccagtttcaatcaat |
27436759 |
T |
|
| Q |
221 |
cttttaatttgctccttctt |
240 |
Q |
| |
|
||||||||| |||||||||| |
|
|
| T |
27436760 |
cttttaattcgctccttctt |
27436779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 24 - 231
Target Start/End: Complemental strand, 27961167 - 27960960
Alignment:
| Q |
24 |
ccattgtagtttttcctgtgccccccatcccttgcaacccggttatataactgttgtcatctttcagagcatcaaaaagctctttgtatttggattttct |
123 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||| |||| ||||| |||||||||||||||||| ||| || |
|
|
| T |
27961167 |
ccattgtagtttttcctgtgccccccatcccttgcaacccagtcatatagttgttgtcatcattcaatgcatccaaaagctctttgtatttgaattccct |
27961068 |
T |
|
| Q |
124 |
actttcaaaagaaatatagtctctggatgaataacgttcaacatctggaagaggagcagggagtccaattacaagatcctttccagtttcaatcaatctt |
223 |
Q |
| |
|
|||| ||||| |||||||| | ||||||||||||||||| |||||||||| | ||||| |||||||| | ||| ||||||||||||||||||||| || |
|
|
| T |
27961067 |
gcttttaaaaggaatatagtgttgggatgaataacgttcaatatctggaagatgggcaggaagtccaatcaaaagttcctttccagtttcaatcaatatt |
27960968 |
T |
|
| Q |
224 |
ttaatttg |
231 |
Q |
| |
|
|| ||||| |
|
|
| T |
27960967 |
tttatttg |
27960960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 30 - 240
Target Start/End: Complemental strand, 27950464 - 27950254
Alignment:
| Q |
30 |
tagtttttcctgtgccccccatcccttgcaacccggttatataactgttgtcatctttcagagcatcaaaaagctctttgtatttggattttctactttc |
129 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| ||| |||| ||||||||||||||| |||||| ||||||| ||||| |||||||| || ||||| |
|
|
| T |
27950464 |
tagtttttcctgtgccccccatccctttcaacccgattacataattgttgtcatctttcaaagcatccaaaagctggttgtagttggatttcctgctttc |
27950365 |
T |
|
| Q |
130 |
aaaagaaatatagtctctggatgaataacgttcaacatctggaagaggagcagggagtccaattacaagatcctttccagtttcaatcaatcttttaatt |
229 |
Q |
| |
|
|||| ||||||| || || ||||| ||||||||||||||||| ||||||||| ||||||| ||| |||||||||| || |||||||||||||||| |
|
|
| T |
27950364 |
aaaatgaatatagacttgcgacgaatattgttcaacatctggaagaagagcagggactccaattgaaagttcctttccagattgaatcaatcttttaatt |
27950265 |
T |
|
| Q |
230 |
tgctccttctt |
240 |
Q |
| |
|
||||||||| |
|
|
| T |
27950264 |
gtctccttctt |
27950254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 28 - 240
Target Start/End: Complemental strand, 11407082 - 11406870
Alignment:
| Q |
28 |
tgtagtttttcctgtgccccccatcccttgcaacccggttatataactgttgtcatctttcagagcatcaaaaagctctttgtatttggattttctactt |
127 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||| ||||| || ||||||||||||||| |||| | ||||| || ||||||| ||| ||| || |
|
|
| T |
11407082 |
tgtagtttttcctgtgccccccatcccatgcaacccgattataaaattgttgtcatctttcaaagcaactaaaagatcattgtattaagataaactaatt |
11406983 |
T |
|
| Q |
128 |
tcaaaagaaatatagtctctggatgaataacgttcaacatctggaagaggagcagggagtccaattacaagatcctttccagtttcaatcaatcttttaa |
227 |
Q |
| |
|
| ||||| |||||| | || || |||||| | |||||||||||||||| |||||| || ||||||| ||| | || ||||||||||||||||||||||| |
|
|
| T |
11406982 |
taaaaaggaatatactgtccgggtgaatagcattcaacatctggaagacgagcagtgaatccaattgaaagtttctctccagtttcaatcaatcttttaa |
11406883 |
T |
|
| Q |
228 |
tttgctccttctt |
240 |
Q |
| |
|
||||||||||||| |
|
|
| T |
11406882 |
tttgctccttctt |
11406870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 27908093 - 27907871
Alignment:
| Q |
18 |
ctttggccattgtagtttttcctgtgccccccatcccttgcaacccggttatataactgttgtcatctttcagagcatcaaaaagctctttgtatttgga |
117 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||| || ||||||||| ||||||||||||||| ||||| |||||| | ||||||| | |
|
|
| T |
27908093 |
ctttggccaacgtagtttttcctgtgccccccatcccttgcaagccagttatataattgttgtcatctttcaatgcatccaaaagcattctgtattttaa |
27907994 |
T |
|
| Q |
118 |
ttttctactttcaaaagaaatatagtctctggatgaataacgttcaacatctggaagaggagcagggagtccaattacaagatcctttccagtttcaatc |
217 |
Q |
| |
|
|| || |||| |||| || ||||| | ||||||||||||||||||||||||| | | ||||||||| ||||| ||| | ||||||||||||||| |
|
|
| T |
27907993 |
ttccctgcttttaaaatgaaaatagtgttgggatgaataacgttcaacatctggataacgggcagggagttcaattgaaagttgctttccagtttcaatt |
27907894 |
T |
|
| Q |
218 |
aatcttttaatttgctccttctt |
240 |
Q |
| |
|
|||||||| |||||||||||||| |
|
|
| T |
27907893 |
aatcttttcatttgctccttctt |
27907871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 21 - 192
Target Start/End: Complemental strand, 26622785 - 26622614
Alignment:
| Q |
21 |
tggccattgtagtttttcctgtgccccccatcccttgcaacccggttatataactgttgtcatctttcagagcatcaaaaagctctttgtatttggattt |
120 |
Q |
| |
|
|||||| ||||||||| | |||||||||||||||||||| ||||||||||| ||||| ||||||| || ||||| || | ||||||||||| || | |
|
|
| T |
26622785 |
tggccaatgtagttttcctagtgccccccatcccttgcaatccggttatatagttgttgccatcttttagtgcatccaacaattctttgtattttgactc |
26622686 |
T |
|
| Q |
121 |
tctactttcaaaagaaatatagtctctggatgaataacgttcaacatctggaagaggagcagggagtccaat |
192 |
Q |
| |
|
||| |||| ||||||||| || | ||||||||||||||||||||||||||||| || ||||||| |||| |
|
|
| T |
26622685 |
tctgcttttaaaagaaatgtaagttttggatgaataacgttcaacatctggaagacgatgagggagttcaat |
26622614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 138
Target Start/End: Original strand, 18725154 - 18725274
Alignment:
| Q |
18 |
ctttggccattgtagtttttcctgtgccccccatcccttgcaacccggttatataactgttgtcatctttcagagcatcaaaaagctctttgtatttgga |
117 |
Q |
| |
|
|||| |||| |||||||||||||||||||||||| |||||||| | ||||||||| || |||||||| | || ||||| |||||||||| |||||| | |
|
|
| T |
18725154 |
cttttgccaatgtagtttttcctgtgccccccattccttgcaatctagttatataattgctgtcatctcttagtgcatccaaaagctcttcgtatttcaa |
18725253 |
T |
|
| Q |
118 |
ttttctactttcaaaagaaat |
138 |
Q |
| |
|
||||| |||||||||||||| |
|
|
| T |
18725254 |
ctttctgctttcaaaagaaat |
18725274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 29 - 113
Target Start/End: Original strand, 27403188 - 27403272
Alignment:
| Q |
29 |
gtagtttttcctgtgccccccatcccttgcaacccggttatataactgttgtcatctttcagagcatcaaaaagctctttgtatt |
113 |
Q |
| |
|
||||||||||| ||||| |||||||||||||| ||||||||||| |||||||||||||||| ||||| || || |||||||||| |
|
|
| T |
27403188 |
gtagtttttccggtgccacccatcccttgcaatccggttatatagttgttgtcatctttcagtgcatccaacagttctttgtatt |
27403272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 29 - 96
Target Start/End: Original strand, 18033545 - 18033612
Alignment:
| Q |
29 |
gtagtttttcctgtgccccccatcccttgcaacccggttatataactgttgtcatctttcagagcatc |
96 |
Q |
| |
|
||||||||||| ||||| |||||||||||||| ||||||||||| |||||||||||||||| ||||| |
|
|
| T |
18033545 |
gtagtttttccggtgccacccatcccttgcaatccggttatatagttgttgtcatctttcagtgcatc |
18033612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 175
Target Start/End: Complemental strand, 27342298 - 27342141
Alignment:
| Q |
18 |
ctttggccattgtagtttttcctgtgccccccatcccttgcaacccggttatataactgttgtcatctttcagagcatcaaaaagctctttgtatttgga |
117 |
Q |
| |
|
|||| |||| |||||||||||||||||||||||| ||| |||| | || |||||| || |||||||| | || ||||| ||||| |||| |||||| | |
|
|
| T |
27342298 |
cttttgccaatgtagtttttcctgtgccccccattcctcgcaatgcagtaatataattgctgtcatctcttagtgcatccaaaagatcttcgtatttcaa |
27342199 |
T |
|
| Q |
118 |
ttttctactttcaaaagaaatatagtctctggatgaataacgttcaacatctggaaga |
175 |
Q |
| |
|
||||| |||||||||| ||| || | | || |||||||| |||||| |||||||| |
|
|
| T |
27342198 |
gtttctgctttcaaaaggaatgtaatattgagaagaataacgctcaacacctggaaga |
27342141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 27368588 - 27368533
Alignment:
| Q |
18 |
ctttggccattgtagtttttcctgtgccccccatcccttgcaacccggttatataa |
73 |
Q |
| |
|
|||| |||| |||||||||||||||||||||||| || ||||| |||||||||||| |
|
|
| T |
27368588 |
cttttgccaatgtagtttttcctgtgccccccattccgtgcaatccggttatataa |
27368533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 27771665 - 27771593
Alignment:
| Q |
18 |
ctttggccattgtagtttttcctgtgccccccatcccttgcaacccggttatataactgttgtcatctttcag |
90 |
Q |
| |
|
||||||| | ||||||||| || |||| ||||| ||||||||||||||||| || |||| ||||||||||| |
|
|
| T |
27771665 |
ctttggctaatgtagttttaccgatgcctcccataccttgcaacccggttatgtagttgttttcatctttcag |
27771593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 9332076 - 9332298
Alignment:
| Q |
18 |
ctttggccattgtagtttttcctgtgccccccatcccttgcaacccggttatataactgttgtcatctttcagagcatcaaaaagctctttgtatttgga |
117 |
Q |
| |
|
|||||| || ||||| ||||||||||||| ||||||||| ||||||| ||| | || ||||||| ||||||| ||||| |||||||||||||||||||| |
|
|
| T |
9332076 |
ctttggtcaatgtaggttttcctgtgcccgccatccctttcaacccgattacaaaattgttgtcgtctttcaatgcatccaaaagctctttgtatttgga |
9332175 |
T |
|
| Q |
118 |
ttttctactttcaaaagaaatatagtctctggatgaataacgttcaacatctggaagaggagcagggagtccaattacaagatcctttccagtttcaatc |
217 |
Q |
| |
|
|| ||||||| ||||| |||||| | | |||||||||||||||||||||||||||| ||||||||||||||||| ||| |||||| | ||||||||| |
|
|
| T |
9332176 |
ttccctacttttaaaaggaatataatgttgggatgaataacgttcaacatctggaagacgagcagggagtccaattgaaagttcctttaccgtttcaatc |
9332275 |
T |
|
| Q |
218 |
aatcttttaatttgctccttctt |
240 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
9332276 |
aatcttttaatttgctccttctt |
9332298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 9385859 - 9386081
Alignment:
| Q |
18 |
ctttggccattgtagtttttcctgtgccccccatcccttgcaacccggttatataactgttgtcatctttcagagcatcaaaaagctctttgtatttgga |
117 |
Q |
| |
|
|||||| || ||||| ||||||||||||| ||||||||| ||||||| ||| | || ||||||| ||||||| ||||| |||||||||||||||||||| |
|
|
| T |
9385859 |
ctttggtcaatgtaggttttcctgtgcccgccatccctttcaacccgattacaaaattgttgtcgtctttcaatgcatccaaaagctctttgtatttgga |
9385958 |
T |
|
| Q |
118 |
ttttctactttcaaaagaaatatagtctctggatgaataacgttcaacatctggaagaggagcagggagtccaattacaagatcctttccagtttcaatc |
217 |
Q |
| |
|
|| ||||||| ||||| |||||| | | |||||||||||||||||||||||||||| ||||||||||||||||| ||| |||||| | ||||||||| |
|
|
| T |
9385959 |
ttccctacttttaaaaggaatataatgttgggatgaataacgttcaacatctggaagacgagcagggagtccaattgaaagttcctttaccgtttcaatc |
9386058 |
T |
|
| Q |
218 |
aatcttttaatttgctccttctt |
240 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
9386059 |
aatcttttaatttgctccttctt |
9386081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0067 (Bit Score: 113; Significance: 2e-57; HSPs: 1)
Name: scaffold0067
Description:
Target: scaffold0067; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 28 - 240
Target Start/End: Complemental strand, 22253 - 22041
Alignment:
| Q |
28 |
tgtagtttttcctgtgccccccatcccttgcaacccggttatataactgttgtcatctttcagagcatcaaaaagctctttgtatttggattttctactt |
127 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||| || ||||||||||||||| |||||| ||||||||||||||||| ||| ||| || |
|
|
| T |
22253 |
tgtagtttttcctgtgccccccatcccttgcatcccggttataaaattgttgtcatctttcaaagcatctaaaagctctttgtatttcgatggactaatt |
22154 |
T |
|
| Q |
128 |
tcaaaagaaatatagtctctggatgaataacgttcaacatctggaagaggagcagggagtccaattacaagatcctttccagtttcaatcaatcttttaa |
227 |
Q |
| |
|
||||||| |||||| | || || |||||| | |||||||||||||||| |||||| || ||||||| ||| | || ||||||||||||||||||||||| |
|
|
| T |
22153 |
tcaaaaggaatatactgtccgggtgaatagcattcaacatctggaagacgagcagtgaatccaattgaaagtttctctccagtttcaatcaatcttttaa |
22054 |
T |
|
| Q |
228 |
tttgctccttctt |
240 |
Q |
| |
|
||||||||||||| |
|
|
| T |
22053 |
tttgctccttctt |
22041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 104; Significance: 6e-52; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 8696499 - 8696719
Alignment:
| Q |
18 |
ctttggccattgtagtttttcctgtgccccccatcccttgcaacccggttatataactgttgtcatctttcagagcatcaaaaagctctttgtatttgga |
117 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||| ||||||| ||| |||| ||||||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
8696499 |
ctttggccaatgtagtttttcctgtgccccccatccctttcaacccgattacataattgttgtcatctttcaatgcatccaaaagctctttgtatttgga |
8696598 |
T |
|
| Q |
118 |
ttttctactttcaaaagaaatatagtctctggatgaataacgttcaacatctggaagaggagcagggagtccaattacaagatcctttccagtttcaatc |
217 |
Q |
| |
|
|| ||| ||||| |||||||| | ||||||||||||||||||| |||||||| |||||||||||||||| ||| |||||||||| ||||| |
|
|
| T |
8696599 |
ttcctggcttctaaaaggaatatagtgttgggatgaataacgttcaacacctggaagacaagcagggagtccaattgaaagttcctttccag--tcaatt |
8696696 |
T |
|
| Q |
218 |
aatcttttaatttgctccttctt |
240 |
Q |
| |
|
|||||||||||||||| |||||| |
|
|
| T |
8696697 |
aatcttttaatttgcttcttctt |
8696719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 97; Significance: 9e-48; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 24 - 240
Target Start/End: Original strand, 26028449 - 26028665
Alignment:
| Q |
24 |
ccattgtagtttttcctgtgccccccatcccttgcaacccggttatataactgttgtcatctttcagagcatcaaaaagctctttgtatttggattttct |
123 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| |||||| |||||||| ||||||| |||||||| ||| |||||||| ||||||| |||| ||| |
|
|
| T |
26028449 |
ccattgtagtttttcttgtgccccccatcccttgtaacccgattatataattgttgtcgtctttcagtacattcaaaagctcaatgtatttagattctct |
26028548 |
T |
|
| Q |
124 |
actttcaaaagaaatatagtctctggatgaataacgttcaacatctggaagaggagcagggagtccaattacaagatcctttccagtttcaatcaatctt |
223 |
Q |
| |
|
|||| |||||||||||||| | |||||||| |||||||||||| ||||| |||||||||||||||| |||| |||||||||||||| | |||| || |
|
|
| T |
26028549 |
gcttttaaaagaaatatagtgttgagatgaatatcgttcaacatctagaagataagcagggagtccaattgcaagttcctttccagtttccaacaatttt |
26028648 |
T |
|
| Q |
224 |
ttaatttgctccttctt |
240 |
Q |
| |
|
||||| || |||||||| |
|
|
| T |
26028649 |
ttaatatgttccttctt |
26028665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0912 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: scaffold0912
Description:
Target: scaffold0912; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 18 - 175
Target Start/End: Original strand, 882 - 1039
Alignment:
| Q |
18 |
ctttggccattgtagtttttcctgtgccccccatcccttgcaacccggttatataactgttgtcatctttcagagcatcaaaaagctctttgtatttgga |
117 |
Q |
| |
|
|||| |||| |||||||||||||||||||||||| |||||||| || | || |||| ||||||||||| | || ||||| ||||||||||||||||| | |
|
|
| T |
882 |
cttttgccaatgtagtttttcctgtgccccccattccttgcaatccagataaataattgttgtcatctcttagtgcatctaaaagctctttgtatttcaa |
981 |
T |
|
| Q |
118 |
ttttctactttcaaaagaaatatagtctctggatgaataacgttcaacatctggaaga |
175 |
Q |
| |
|
||||| |||||||||||||| || ||| || |||||||| |||||| |||||||| |
|
|
| T |
982 |
ctttctgctttcaaaagaaatgtaatcttgagaagaataacgctcaacacctggaaga |
1039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0043 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: scaffold0043
Description:
Target: scaffold0043; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 18 - 175
Target Start/End: Original strand, 74963 - 75120
Alignment:
| Q |
18 |
ctttggccattgtagtttttcctgtgccccccatcccttgcaacccggttatataactgttgtcatctttcagagcatcaaaaagctctttgtatttgga |
117 |
Q |
| |
|
|||| |||| |||||||||||||||||||||||| |||||||| || || |||||| ||||||||||| | || ||||| |||||||||| |||||| | |
|
|
| T |
74963 |
cttttgccaatgtagtttttcctgtgccccccattccttgcaatccagtaatataattgttgtcatctcttagtgcatccaaaagctcttcgtatttcaa |
75062 |
T |
|
| Q |
118 |
ttttctactttcaaaagaaatatagtctctggatgaataacgttcaacatctggaaga |
175 |
Q |
| |
|
|||||||||||||||||||| || | | || |||||||| |||||| |||||||| |
|
|
| T |
75063 |
ctttctactttcaaaagaaatgtaatattgagaagaataacgctcaacacctggaaga |
75120 |
T |
|
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