View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1830_low_18 (Length: 239)
Name: NF1830_low_18
Description: NF1830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1830_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 124; Significance: 6e-64; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 96 - 235
Target Start/End: Complemental strand, 4636018 - 4635879
Alignment:
| Q |
96 |
gatcatgtcaaacaaggcagttatcttaatccttttcatgtttaaactctagaacaccatgaacactcaaacatttcttgaaaaaactttgcacaatatg |
195 |
Q |
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| T |
4636018 |
gatcatgtcaaacaaggcagttatcttaatccttttcatgtttaaactctagaacatcatgaacactcaaacattttttgaaaaaactttgcataatatg |
4635919 |
T |
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| Q |
196 |
ttctatgatttctagtttaatgtaataaaatgaaaactaa |
235 |
Q |
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| T |
4635918 |
ttctatgatttctagtttaatgtaataaaattaaaactaa |
4635879 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 96 - 231
Target Start/End: Complemental strand, 4642239 - 4642104
Alignment:
| Q |
96 |
gatcatgtcaaacaaggcagttatcttaatccttttcatgtttaaactctagaacaccatgaacactcaaacatttcttgaaaaaactttgcacaatatg |
195 |
Q |
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| T |
4642239 |
gatcatgtcaaataagacaattatcttcatacttttcatgtttaaactcaagaacaccataagcactcaaacatttttggaaaaacttttgcacagtatg |
4642140 |
T |
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| Q |
196 |
ttctatgatttctagtttaatgtaataaaatgaaaa |
231 |
Q |
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| T |
4642139 |
ttggacgatttctattttgatgtaataaaattaaaa |
4642104 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 101 - 213
Target Start/End: Complemental strand, 4631880 - 4631768
Alignment:
| Q |
101 |
tgtcaaacaaggcagttatcttaatccttttcatgtttaaactctagaacaccatgaacactcaaacatttcttgaaaaaactttgcacaatatgttcta |
200 |
Q |
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| T |
4631880 |
tgtcgaacatggcagttatcttcatcattttcatgtttaaactcaaaaacaccataaacagtcaaatattttatgcaaaacttttgcacaatatgtttta |
4631781 |
T |
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| Q |
201 |
tgatttctagttt |
213 |
Q |
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| T |
4631780 |
tgatttctagttt |
4631768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 100 - 213
Target Start/End: Complemental strand, 10398784 - 10398671
Alignment:
| Q |
100 |
atgtcaaacaaggcagttatcttaatccttttcatgtttaaactctagaacaccatgaacactcaaacatttcttgaaaaaactttgcacaatatgttct |
199 |
Q |
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| T |
10398784 |
atgtcgaacaagacaattatcttgatcttttttacattcaaactcaggaacaccatgaatattcaaacattttttgaaaaacatttgcacaatatgtcct |
10398685 |
T |
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| Q |
200 |
atgatttctagttt |
213 |
Q |
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| T |
10398684 |
agggtttctagttt |
10398671 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 213
Target Start/End: Original strand, 49300431 - 49300497
Alignment:
| Q |
147 |
gaacaccatgaacactcaaacatttcttgaaaaaactttgcacaatatgttctatgatttctagttt |
213 |
Q |
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| T |
49300431 |
gaacatcatgaacattcaaacattttctgaaaaacaattgcacaataagttctaagatttctagttt |
49300497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 213
Target Start/End: Original strand, 22259443 - 22259500
Alignment:
| Q |
156 |
gaacactcaaacatttcttgaaaaaactttgcacaatatgttctatgatttctagttt |
213 |
Q |
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| T |
22259443 |
gaacattcaaacattttctgaaaaaacattgcacaacatgttataggatttctagttt |
22259500 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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