View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1830_low_2 (Length: 557)
Name: NF1830_low_2
Description: NF1830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1830_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 450; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 19 - 551
Target Start/End: Original strand, 8458173 - 8458711
Alignment:
| Q |
19 |
attgaattcattttttcatgttaccattatttgtaggaagctgtcaagagagaattttggcgtctgcgtgatgctcaagggaagccacctggtgtgattg |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8458173 |
attgaattcattttttcatgttaccattatttgtaggaagctgtcaagagagaattttggcgtctgcgtgatgctcaagggaagccacctggtgtgattg |
8458272 |
T |
|
| Q |
119 |
gatggtggccttcaagatcagtcacatttgtagataatcatgatactggctcaactcaggttcttagttcactatttctcaaaataacacactgaaatac |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
8458273 |
gatggtggccttcaagatcagtcacatttgtagataatcatgatactggctcaactcaggtttttagttcactatttctcaaaataacacactgaaatac |
8458372 |
T |
|
| Q |
219 |
atgctcaagtgggggtgtgtatggtcagcgcaaatttatatgcatttttcttatttcgtatggaaactacaagcctggttatggtataattgatttatgt |
318 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8458373 |
atgctcaagtgggggtgtgtatggtcagcgcaactttatatgcatttttcttatttcgtatggaaactacaagcctggttatggtataattgatttatgt |
8458472 |
T |
|
| Q |
319 |
aaaattaattttgcatttggaaataaattttgctatgtgaattgaaatattaaggaatagaagggatatttaggtttaaaggttactgattaataagg-- |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8458473 |
aaaattaattttgcatttggaaataaattttgctatgtgaattgaaatattaaggaatagaagggatatttaggtttaaaggttactgattaataaggtg |
8458572 |
T |
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| Q |
417 |
----ttacccactgcgaatatgacattttcttctacatcattttacttataccttcnnnnnnnnnnnnnnnnnnggcaataacacattgcattttccgat |
512 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
8458573 |
ccttttaaccactgcgaatatgacattttcttctacatcattttacttataccttctttttttataatttttttggcaataacacattgcattttccgat |
8458672 |
T |
|
| Q |
513 |
taaaatcctaaactcatgctcttgattcactctctgtgc |
551 |
Q |
| |
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| T |
8458673 |
taaaatcctaaactcatgctcttgattcactctctgtgc |
8458711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 109; Significance: 1e-54; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 19 - 146
Target Start/End: Complemental strand, 25802700 - 25802572
Alignment:
| Q |
19 |
attgaattcattttttcatgttaccattatttgtaggaag-ctgtcaagagagaattttggcgtctgcgtgatgctcaagggaagccacctggtgtgatt |
117 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25802700 |
attgaattcattttctcatgttaccattatttgtaggaattctgtcaagatagaattttggcgtctgcgtgatgctcaagggaagccacctggtgtgatt |
25802601 |
T |
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| Q |
118 |
ggatggtggccttcaagatcagtcacatt |
146 |
Q |
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| T |
25802600 |
ggatggtggccttcaagatcagtcacatt |
25802572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 97; Significance: 2e-47; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 19 - 138
Target Start/End: Complemental strand, 6827270 - 6827150
Alignment:
| Q |
19 |
attgaattcattttttcatgttaccattatttgtaggaag-ctgtcaagagagaattttggcgtctgcgtgatgctcaagggaagccacctggtgtgatt |
117 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||| ||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
6827270 |
attgaattcattttctcatgttaccattatttgtaggaattctgtcaagatagaattctggcgtctgcgtgatgctcaagggaagccacctggtgtgatt |
6827171 |
T |
|
| Q |
118 |
ggatggtggccttcaagatca |
138 |
Q |
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||||||||||||||||||||| |
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| T |
6827170 |
ggatggtggccttcaagatca |
6827150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 97; Significance: 2e-47; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 19 - 138
Target Start/End: Original strand, 9822874 - 9822994
Alignment:
| Q |
19 |
attgaattcattttttcatgttaccattatttgtaggaag-ctgtcaagagagaattttggcgtctgcgtgatgctcaagggaagccacctggtgtgatt |
117 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||| ||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
9822874 |
attgaattcattttctcatgttaccattatttgtaggaattctgtcaagatagaattatggcgtctgcgtgatgctcaagggaagccacctggtgtgatt |
9822973 |
T |
|
| Q |
118 |
ggatggtggccttcaagatca |
138 |
Q |
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||||||||||||||||||||| |
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| T |
9822974 |
ggatggtggccttcaagatca |
9822994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 95; Significance: 3e-46; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 22 - 139
Target Start/End: Complemental strand, 18361263 - 18361145
Alignment:
| Q |
22 |
gaattcattttttcatgttaccattatttgtaggaagc-tgtcaagagagaattttggcgtctgcgtgatgctcaagggaagccacctggtgtgattgga |
120 |
Q |
| |
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||||||||||| |||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
18361263 |
gaattcattttctcatgttaccattatttgtaggaatcatgtcaagatagaattttggcgtctgcgtgatgctcaagggaagccacctggtgtgattgaa |
18361164 |
T |
|
| Q |
121 |
tggtggccttcaagatcag |
139 |
Q |
| |
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||||||||||||||||||| |
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| T |
18361163 |
tggtggccttcaagatcag |
18361145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 76; Significance: 7e-35; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 59 - 138
Target Start/End: Complemental strand, 27964043 - 27963964
Alignment:
| Q |
59 |
ctgtcaagagagaattttggcgtctgcgtgatgctcaagggaagccacctggtgtgattggatggtggccttcaagatca |
138 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27964043 |
ctgtcaagatagaattttggcgtctgcgtgatgctcaagggaagccacctggtgtgattggatggtggccttcaagatca |
27963964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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