View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1830_low_24 (Length: 223)
Name: NF1830_low_24
Description: NF1830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1830_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 149; Significance: 7e-79; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 18 - 207
Target Start/End: Complemental strand, 23430092 - 23429899
Alignment:
| Q |
18 |
ttctgctgaatatgatgtgaaatcatcactgattc----tgacttctccacttcgaaacccacctgtcaatgattttactcaatctccatgttatcttca |
113 |
Q |
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| T |
23430092 |
ttctgctgaatatgatgtgaaatcatcactgattcattctgacttctccactttgaaaccaacctgtcaatgattttactcaatctccatgttatcttca |
23429993 |
T |
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| Q |
114 |
tcctgctaaagtataggctacgttttggtttcaccttaattaaataacacaaattaccattcattgagccgcaatatgaaatgttcctcatatc |
207 |
Q |
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| T |
23429992 |
tcctgctgaaatataggccaagttttggtttcaccttaattaaataacacaaattaccattcatggagccgcaatatgaaatgttcctcatatc |
23429899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 40 - 117
Target Start/End: Complemental strand, 550538 - 550461
Alignment:
| Q |
40 |
tcatcactgattctgacttctccacttcgaaacccacctgtcaatgattttactcaatctccatgttatcttcatcct |
117 |
Q |
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| T |
550538 |
tcatcactgattcctacttcttcacttcaaaactaacatgtcaattattttactctatctccatattatcttcatcct |
550461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 56 - 169
Target Start/End: Complemental strand, 23437893 - 23437779
Alignment:
| Q |
56 |
cttctccacttcgaaacccacctgtcaatgattttactcaatctccatgttatcttcatcctgct-aaagtataggctacgttttggtttcaccttaatt |
154 |
Q |
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| T |
23437893 |
cttctccgcttcgaaaccaacatatcaatgattttactcaatctcctaattatcttcatcctactgaaaatctaggctctgatttgatttcacctcaact |
23437794 |
T |
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| Q |
155 |
aaataacacaaatta |
169 |
Q |
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| T |
23437793 |
gaataaaacaaatta |
23437779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 40 - 194
Target Start/End: Original strand, 3811501 - 3811656
Alignment:
| Q |
40 |
tcatcactgattctgacttctccacttcgaaacccacctgtcaatgattttactcaatctccatgttatcttcatcctgct-aaagtataggctacgttt |
138 |
Q |
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| T |
3811501 |
tcatcaccgattccgacttctccacttccaacccaacctgtcaatgattttacccaatctccatattatcttcatcctggtgagaatccaggctctgttt |
3811600 |
T |
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| Q |
139 |
tggtttcaccttaattaaataacacaaattaccattcattgagccgcaatatgaaa |
194 |
Q |
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| T |
3811601 |
tgatttcatctcaattaaataacaccaattaccattcatggagccgcaacatgaaa |
3811656 |
T |
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