View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1830_low_3 (Length: 426)
Name: NF1830_low_3
Description: NF1830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1830_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 358; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 16 - 413
Target Start/End: Complemental strand, 33121119 - 33120722
Alignment:
| Q |
16 |
caaaagcagttcttacactttctgcatttgcacttgaatttggtgaattctggttacttgaacaacatctttcaacagacccacttgccaaatctgtggc |
115 |
Q |
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| T |
33121119 |
caaaagcagttcttacactttctgcatttgcacttgaatttggtgaattctggttacttgaacaacatctttcaacagacccacttgccaaatctgtggc |
33121020 |
T |
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| Q |
116 |
tttgctgaaacgagttccgatcctcgcaaagcctgcagcaattcaaaaacatcgtcaagccatcaccgaacttaatagtttggtgaaaatcacgttgcaa |
215 |
Q |
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| T |
33121019 |
tttgctgaaacgagttccgatcctagcaaagcctgcagcaattcaaaaacaccgtcaagctatcaccgagcttaatagtttggtgaaaatcacgttgcaa |
33120920 |
T |
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| Q |
216 |
gtgattgaatttatacttgaattggattaccttaatgataggtatgacacaaaggttgttcctgctttggaacttgcatatgaacaaattcctgttgatg |
315 |
Q |
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| T |
33120919 |
gtgattgaatttatacttgaattggattaccttaatgataggtatgacacaaaggtcgttcctgctttggaacttgcatatgaacaaattcctgttgatg |
33120820 |
T |
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| Q |
316 |
tttactggaccatcatcactattgctgcaattgttactcagttagattgcctcatcactgaatcgtaagtttaattaaataatattgcatattcatct |
413 |
Q |
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| T |
33120819 |
tttactggaccatcatcactattgctgcaattgttactcagttagattgcctcatcactgaatcgtaagttttattaattaatatcgtttattcatct |
33120722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 297 - 392
Target Start/End: Original strand, 33139345 - 33139440
Alignment:
| Q |
297 |
gaacaaattcctgttgatgtttactggaccatcatcactattgctgcaattgttactcagttagattgcctcatcactgaatcgtaagtttaatta |
392 |
Q |
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| T |
33139345 |
gaacaattccctgttgatgtatattgggttatcatcaccattgttgcaattgttactcagtttgaatgtctcaccactaattcgtaagtttaatta |
33139440 |
T |
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