View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1830_low_6 (Length: 363)

Name: NF1830_low_6
Description: NF1830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1830_low_6
NF1830_low_6
[»] chr5 (22 HSPs)
chr5 (39-356)||(40461630-40461947)
chr5 (41-98)||(8278294-8278351)
chr5 (41-98)||(16773807-16773864)
chr5 (39-99)||(30883215-30883275)
chr5 (52-98)||(3252319-3252365)
chr5 (41-98)||(14495824-14495881)
chr5 (50-99)||(24652867-24652916)
chr5 (39-95)||(18437088-18437144)
chr5 (43-99)||(22737081-22737137)
chr5 (39-99)||(34984805-34984865)
chr5 (193-344)||(137424-137580)
chr5 (39-98)||(25627057-25627116)
chr5 (52-99)||(41643915-41643962)
chr5 (41-91)||(1410678-1410728)
chr5 (45-98)||(20118596-20118649)
chr5 (41-98)||(21589288-21589345)
chr5 (39-100)||(26078068-26078129)
chr5 (42-99)||(30109328-30109385)
chr5 (39-99)||(16436617-16436676)
chr5 (42-98)||(21549157-21549213)
chr5 (39-99)||(29692403-29692463)
chr5 (42-98)||(40281112-40281168)
[»] chr3 (22 HSPs)
chr3 (112-261)||(7490543-7490692)
chr3 (42-99)||(5499427-5499484)
chr3 (39-99)||(39976448-39976508)
chr3 (43-98)||(31510739-31510794)
chr3 (41-99)||(36720380-36720438)
chr3 (47-99)||(24481580-24481632)
chr3 (39-99)||(27093378-27093438)
chr3 (39-98)||(17108915-17108974)
chr3 (39-98)||(19341801-19341860)
chr3 (43-98)||(47810765-47810820)
chr3 (41-91)||(4844530-4844580)
chr3 (41-91)||(4870226-4870276)
chr3 (41-99)||(8051213-8051271)
chr3 (39-96)||(8390639-8390696)
chr3 (41-98)||(21960551-21960608)
chr3 (42-99)||(36797686-36797743)
chr3 (39-100)||(53412943-53413004)
chr3 (70-98)||(2597268-2597296)
chr3 (44-96)||(10682965-10683017)
chr3 (50-90)||(12761520-12761560)
chr3 (42-98)||(16212992-16213048)
chr3 (67-99)||(34622567-34622599)
[»] chr6 (25 HSPs)
chr6 (142-263)||(11648058-11648179)
chr6 (39-98)||(22995128-22995187)
chr6 (39-98)||(23793213-23793272)
chr6 (39-96)||(22995052-22995109)
chr6 (39-96)||(23793291-23793348)
chr6 (118-174)||(14288577-14288633)
chr6 (41-99)||(33549103-33549161)
chr6 (41-99)||(31623010-31623068)
chr6 (41-98)||(11423566-11423623)
chr6 (41-98)||(21418470-21418527)
chr6 (43-91)||(3968215-3968263)
chr6 (39-99)||(12188320-12188380)
chr6 (48-99)||(12234533-12234584)
chr6 (193-240)||(12354084-12354131)
chr6 (109-186)||(9882075-9882153)
chr6 (296-346)||(12354251-12354301)
chr6 (48-86)||(13469162-13469200)
chr6 (109-186)||(22216286-22216364)
chr6 (48-101)||(13441047-13441100)
chr6 (41-98)||(14557962-14558019)
chr6 (65-98)||(30127400-30127433)
chr6 (43-92)||(34444809-34444858)
chr6 (40-88)||(6558684-6558732)
chr6 (39-91)||(8268645-8268697)
chr6 (39-99)||(14199964-14200024)
[»] chr7 (29 HSPs)
chr7 (39-98)||(22760863-22760922)
chr7 (42-98)||(23301622-23301678)
chr7 (41-100)||(2446306-2446365)
chr7 (118-250)||(37078260-37078392)
chr7 (39-99)||(23595728-23595788)
chr7 (39-99)||(26526289-26526349)
chr7 (42-101)||(38917092-38917150)
chr7 (39-98)||(43590907-43590966)
chr7 (41-91)||(33362639-33362689)
chr7 (42-99)||(18056795-18056852)
chr7 (41-98)||(20335850-20335907)
chr7 (39-100)||(23552116-23552177)
chr7 (41-98)||(27776172-27776229)
chr7 (42-98)||(24513797-24513853)
chr7 (59-91)||(28115903-28115935)
chr7 (51-99)||(30579334-30579382)
chr7 (51-99)||(41487361-41487409)
chr7 (39-99)||(43215183-43215243)
chr7 (39-98)||(5273607-5273666)
chr7 (39-98)||(7801180-7801239)
chr7 (39-98)||(15137553-15137612)
chr7 (39-98)||(18363696-18363755)
chr7 (39-98)||(25021352-25021411)
chr7 (39-98)||(26459427-26459486)
chr7 (212-266)||(1847018-1847072)
chr7 (39-100)||(38374616-38374677)
chr7 (41-97)||(35513467-35513523)
chr7 (39-91)||(36803644-36803696)
chr7 (233-281)||(48631363-48631411)
[»] chr2 (29 HSPs)
chr2 (39-98)||(35916086-35916145)
chr2 (41-98)||(19016031-19016088)
chr2 (39-99)||(37480074-37480134)
chr2 (39-98)||(23052540-23052599)
chr2 (42-99)||(29197396-29197453)
chr2 (39-99)||(4060231-4060291)
chr2 (39-99)||(30808664-30808724)
chr2 (43-98)||(19244109-19244164)
chr2 (41-100)||(39714990-39715049)
chr2 (41-99)||(1729815-1729873)
chr2 (41-99)||(7799054-7799112)
chr2 (109-186)||(20424327-20424405)
chr2 (39-91)||(4881712-4881764)
chr2 (62-98)||(5147719-5147755)
chr2 (48-100)||(14780504-14780556)
chr2 (42-98)||(18259730-18259786)
chr2 (39-99)||(34041605-34041665)
chr2 (39-98)||(11062360-11062419)
chr2 (39-98)||(42327412-42327471)
chr2 (61-99)||(36317430-36317468)
chr2 (42-95)||(7667489-7667542)
chr2 (48-81)||(24393505-24393538)
chr2 (41-98)||(28846691-28846748)
chr2 (50-99)||(35710390-35710439)
chr2 (41-98)||(42860348-42860405)
chr2 (42-98)||(12994396-12994452)
chr2 (39-99)||(29503270-29503330)
chr2 (39-99)||(41138326-41138386)
chr2 (39-99)||(42602553-42602613)
[»] chr1 (30 HSPs)
chr1 (39-99)||(51814493-51814553)
chr1 (41-99)||(40257398-40257456)
chr1 (39-104)||(31794281-31794346)
chr1 (42-98)||(4280471-4280527)
chr1 (39-99)||(29817674-29817734)
chr1 (42-98)||(37400274-37400330)
chr1 (41-100)||(45235398-45235457)
chr1 (39-98)||(48619226-48619285)
chr1 (39-98)||(52116798-52116857)
chr1 (109-166)||(19224256-19224314)
chr1 (48-98)||(21694446-21694496)
chr1 (41-99)||(25297771-25297829)
chr1 (40-98)||(44961765-44961823)
chr1 (41-98)||(2219972-2220029)
chr1 (212-265)||(9326619-9326672)
chr1 (41-94)||(24047121-24047174)
chr1 (42-94)||(9224779-9224831)
chr1 (51-90)||(5032283-5032322)
chr1 (39-98)||(9165212-9165271)
chr1 (39-98)||(11438501-11438560)
chr1 (39-78)||(14787353-14787392)
chr1 (39-98)||(16169995-16170054)
chr1 (41-95)||(8818142-8818196)
chr1 (39-97)||(30759418-30759476)
chr1 (43-97)||(44126396-44126450)
chr1 (39-100)||(36371468-36371529)
chr1 (39-99)||(8904413-8904473)
chr1 (42-97)||(18459251-18459307)
chr1 (39-91)||(47720837-47720889)
chr1 (39-91)||(47727829-47727881)
[»] chr4 (28 HSPs)
chr4 (39-98)||(46545711-46545770)
chr4 (41-98)||(19238596-19238653)
chr4 (39-95)||(20281209-20281265)
chr4 (48-99)||(21660170-21660221)
chr4 (48-99)||(21668934-21668985)
chr4 (39-98)||(31759675-31759734)
chr4 (193-341)||(35185564-35185718)
chr4 (41-98)||(9936980-9937037)
chr4 (39-95)||(25869594-25869650)
chr4 (39-98)||(20216111-20216170)
chr4 (39-98)||(37109368-37109427)
chr4 (48-99)||(49225456-49225507)
chr4 (39-102)||(51250539-51250602)
chr4 (48-95)||(51346484-51346531)
chr4 (48-102)||(3350481-3350535)
chr4 (41-99)||(24827824-24827882)
chr4 (65-98)||(5795452-5795485)
chr4 (39-96)||(40284003-40284060)
chr4 (41-98)||(47044717-47044774)
chr4 (42-95)||(52254424-52254477)
chr4 (318-346)||(4104431-4104459)
chr4 (233-281)||(4104482-4104530)
chr4 (38-94)||(4911248-4911304)
chr4 (39-95)||(7292815-7292871)
chr4 (50-98)||(13496241-13496289)
chr4 (50-94)||(13901746-13901790)
chr4 (39-99)||(37720231-37720291)
chr4 (39-91)||(49576911-49576963)
[»] chr8 (22 HSPs)
chr8 (41-99)||(35641920-35641978)
chr8 (39-100)||(28783058-28783119)
chr8 (39-99)||(19703504-19703564)
chr8 (193-281)||(14979607-14979697)
chr8 (48-99)||(17727452-17727503)
chr8 (39-101)||(44780131-44780193)
chr8 (212-265)||(20463690-20463743)
chr8 (51-95)||(25058670-25058714)
chr8 (42-98)||(29431011-29431067)
chr8 (39-98)||(18540298-18540357)
chr8 (43-98)||(20994479-20994534)
chr8 (39-98)||(23361666-23361725)
chr8 (48-95)||(34966876-34966923)
chr8 (109-183)||(39326008-39326083)
chr8 (41-99)||(16852339-16852397)
chr8 (41-98)||(968362-968419)
chr8 (39-96)||(2203494-2203551)
chr8 (43-99)||(3826798-3826854)
chr8 (48-100)||(8484997-8485049)
chr8 (233-281)||(15334263-15334311)
chr8 (233-281)||(15423326-15423374)
chr8 (233-281)||(15514632-15514680)
[»] scaffold0258 (1 HSPs)
scaffold0258 (41-98)||(15342-15399)
[»] scaffold0517 (1 HSPs)
scaffold0517 (42-98)||(7746-7802)
[»] scaffold0019 (1 HSPs)
scaffold0019 (212-265)||(111861-111914)
[»] scaffold0187 (2 HSPs)
scaffold0187 (39-98)||(12439-12498)
scaffold0187 (39-98)||(22767-22826)
[»] scaffold0118 (2 HSPs)
scaffold0118 (46-99)||(41125-41178)
scaffold0118 (41-98)||(41652-41709)
[»] scaffold0361 (1 HSPs)
scaffold0361 (66-98)||(5233-5265)


Alignment Details
Target: chr5 (Bit Score: 286; Significance: 1e-160; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 39 - 356
Target Start/End: Original strand, 40461630 - 40461947
Alignment:
Q  39 ttgaggagaagcacactctcaagtctcaagtcaataccaccagaccaacccaagtgggtttcaaggaatgttaataaagacttaaaatgtaaaaatatat 138  Q
    ||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40461630 ttgaggagaagcacactctcaagtctcaagttaataccaccagatcaacccaagtgggtttcaaggaatgttaataaagacttaaaatgtaaaaatatat 40461729  T
Q  139 aactatacataagtaaatctcattcatataattcattaagagtaacaacatcattccatacatcaacttaattaaaacaatagataaagtatgtagttta 238  Q
    ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40461730 aactataaataagtaaatctcattcgtataattcattaagagtaacaacatcattccatacatcaacttaattaaaacaatagataaagtatgtagttta 40461829  T
Q  239 aacattcaaaaatcgaaacactagtggtcgaacatttaaaacatttaaaacaagatgtccataaaatatctaagtattttctagtgatgttgcttcaatg 338  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||    
T  40461830 aacattcaaaaatcgaaacactagtggtcgaacatttaaaacatttaaaataagatgtctataaaatatctaagtattttctagtgatgttgcttcaatg 40461929  T
Q  339 atcctcaaagaattatct 356  Q
    |||||||| ||| |||||    
T  40461930 atcctcaaggaaatatct 40461947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 41 - 98
Target Start/End: Original strand, 8278294 - 8278351
Alignment:
Q  41 gaggagaagcacactctcaagtctcaagtcaataccaccagaccaacccaagtgggtt 98  Q
    |||||| ||||||||| |||||| |||| |||||||| ||||||||||||||||||||    
T  8278294 gaggaggagcacactcccaagtcccaagccaataccatcagaccaacccaagtgggtt 8278351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 41 - 98
Target Start/End: Complemental strand, 16773864 - 16773807
Alignment:
Q  41 gaggagaagcacactctcaagtctcaagtcaataccaccagaccaacccaagtgggtt 98  Q
    |||||| ||||||||| || ||| ||||||||||||||||||||||| ||||||||||    
T  16773864 gaggaggagcacactcccaggtcccaagtcaataccaccagaccaactcaagtgggtt 16773807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 39 - 99
Target Start/End: Original strand, 30883215 - 30883275
Alignment:
Q  39 ttgaggagaagcacactctcaagtctcaagtcaataccaccagaccaacccaagtgggttt 99  Q
    |||||||| ||||||||| || ||| |||| ||||||||| ||||||||||||||||||||    
T  30883215 ttgaggaggagcacactcccaggtcccaagccaataccactagaccaacccaagtgggttt 30883275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 52 - 98
Target Start/End: Original strand, 3252319 - 3252365
Alignment:
Q  52 cactctcaagtctcaagtcaataccaccagaccaacccaagtgggtt 98  Q
    ||||| ||||||||||||||||||||| || ||||||||||||||||    
T  3252319 cactcccaagtctcaagtcaataccactaggccaacccaagtgggtt 3252365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 41 - 98
Target Start/End: Original strand, 14495824 - 14495881
Alignment:
Q  41 gaggagaagcacactctcaagtctcaagtcaataccaccagaccaacccaagtgggtt 98  Q
    |||||| ||||||||| ||  || ||||||||||||||||||||||||||| ||||||    
T  14495824 gaggaggagcacactcccagatcccaagtcaataccaccagaccaacccaaatgggtt 14495881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 50 - 99
Target Start/End: Complemental strand, 24652916 - 24652867
Alignment:
Q  50 cacactctcaagtctcaagtcaataccaccagaccaacccaagtgggttt 99  Q
    ||||||| ||| ||||||||||||||||||||||||| ||||||| ||||    
T  24652916 cacactcccaaatctcaagtcaataccaccagaccaatccaagtgagttt 24652867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 95
Target Start/End: Complemental strand, 18437144 - 18437088
Alignment:
Q  39 ttgaggagaagcacactctcaagtctcaagtcaataccaccagaccaacccaagtgg 95  Q
    |||||||| |||||||||||||||| ||||| |||||||| || |||||| ||||||    
T  18437144 ttgaggaggagcacactctcaagtcccaagttaataccactaggccaacctaagtgg 18437088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 99
Target Start/End: Complemental strand, 22737137 - 22737081
Alignment:
Q  43 ggagaagcacactctcaagtctcaagtcaataccaccagaccaacccaagtgggttt 99  Q
    |||| ||||||||  |||||| |||| ||||||||| ||||||||||||||||||||    
T  22737137 ggaggagcacacttccaagtcccaagccaataccactagaccaacccaagtgggttt 22737081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 99
Target Start/End: Complemental strand, 34984865 - 34984805
Alignment:
Q  39 ttgaggagaagcacactctcaagtctcaagtcaataccaccagaccaacccaagtgggttt 99  Q
    |||||||| ||||||||| || ||  |||| ||||||||| ||||||||||||||||||||    
T  34984865 ttgaggaggagcacactcccaggttccaagccaataccactagaccaacccaagtgggttt 34984805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 193 - 344
Target Start/End: Complemental strand, 137580 - 137424
Alignment:
Q  193 tccatacatcaacttaattaaaacaatagataaagtatgtagtttaaacattc-aaaaatcgaaacactagtggtcgaacatttaaaacatttaaaacaa 291  Q
    ||||||||||||||||| |||||||| ||||| || |   | ||||||||||| |||||||||||||||| ||   ||||||| ||||||  |  | |||    
T  137580 tccatacatcaacttaactaaaacaaaagatatagcaccaaatttaaacattcaaaaaatcgaaacactaatgactgaacattcaaaacaactgtagcaa 137481  T
Q  292 gat----gtccataaaatatctaagtattttctagtgatgttgcttcaatgatcctc 344  Q
     ||      ||||||||||||||| ||||  ||| ||||||||||||||||||||||    
T  137480 aattataagccataaaatatctaaatattccctaatgatgttgcttcaatgatcctc 137424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 39 - 98
Target Start/End: Complemental strand, 25627116 - 25627057
Alignment:
Q  39 ttgaggagaagcacactctcaagtctcaagtcaataccaccagaccaacccaagtgggtt 98  Q
    |||||||| ||||||||| |||||  |||| ||||||||| || ||||||||||||||||    
T  25627116 ttgaggaggagcacactcccaagttccaagccaataccactaggccaacccaagtgggtt 25627057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 52 - 99
Target Start/End: Complemental strand, 41643962 - 41643915
Alignment:
Q  52 cactctcaagtctcaagtcaataccaccagaccaacccaagtgggttt 99  Q
    |||||| |||| ||||||||||||||| ||||||| ||||||||||||    
T  41643962 cactcttaagtttcaagtcaataccactagaccaatccaagtgggttt 41643915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 41 - 91
Target Start/End: Original strand, 1410678 - 1410728
Alignment:
Q  41 gaggagaagcacactctcaagtctcaagtcaataccaccagaccaacccaa 91  Q
    |||||| ||||||||| ||  || |||||||||||||||||||||||||||    
T  1410678 gaggaggagcacactcccatatcccaagtcaataccaccagaccaacccaa 1410728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 98
Target Start/End: Original strand, 20118596 - 20118649
Alignment:
Q  45 agaagcacactctcaagtctcaagtcaataccaccagaccaacccaagtgggtt 98  Q
    ||||||| | ||||| ||||  ||||||||||||||||||||||||| ||||||    
T  20118596 agaagcatattctcatgtctttagtcaataccaccagaccaacccaaatgggtt 20118649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 98
Target Start/End: Complemental strand, 21589345 - 21589288
Alignment:
Q  41 gaggagaagcacactctcaagtctcaagtcaataccaccagaccaacccaagtgggtt 98  Q
    |||||| |||| |||| || ||| |||| |||||||||||| ||||||||||||||||    
T  21589345 gaggagtagcagactcccaggtcccaagccaataccaccaggccaacccaagtgggtt 21589288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 100
Target Start/End: Original strand, 26078068 - 26078129
Alignment:
Q  39 ttgaggagaagcacactctcaagtctcaagtcaataccaccagaccaacccaagtgggtttc 100  Q
    |||| |||||||| |||| |||||| |||  ||||||||| || ||||||||||||||||||    
T  26078068 ttgaagagaagcatactcccaagtcccaaaccaataccactaggccaacccaagtgggtttc 26078129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 99
Target Start/End: Original strand, 30109328 - 30109385
Alignment:
Q  42 aggagaagcacactctcaagtctcaagtcaataccaccagaccaacccaagtgggttt 99  Q
    ||||| ||||||||| || ||| |||| |||||||||||  |||||||||||||||||    
T  30109328 aggaggagcacactcccaggtcacaagccaataccaccaagccaacccaagtgggttt 30109385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 99
Target Start/End: Complemental strand, 16436676 - 16436617
Alignment:
Q  39 ttgaggagaagcacactctcaagtctcaagtcaataccaccagaccaacccaagtgggttt 99  Q
    |||||||| ||||||||| |||||| |||| ||||||||| || |||||||||||| ||||    
T  16436676 ttgaggaggagcacactc-caagtcccaagccaataccactaggccaacccaagtgagttt 16436617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 42 - 98
Target Start/End: Original strand, 21549157 - 21549213
Alignment:
Q  42 aggagaagcacactctcaagtctcaagtcaataccaccagaccaacccaagtgggtt 98  Q
    ||||| ||||||||| || ||| |||| ||||||||| || ||||||||||||||||    
T  21549157 aggaggagcacactcccaggtcccaagccaataccactaggccaacccaagtgggtt 21549213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 99
Target Start/End: Original strand, 29692403 - 29692463
Alignment:
Q  39 ttgaggagaagcacactctcaagtctcaagtcaataccaccagaccaacccaagtgggttt 99  Q
    |||||||| ||||||||| ||  || |||  |||||||||||||||||||||| |||||||    
T  29692403 ttgaggaggagcacactcccagatcccaatccaataccaccagaccaacccaaatgggttt 29692463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 42 - 98
Target Start/End: Original strand, 40281112 - 40281168
Alignment:
Q  42 aggagaagcacactctcaagtctcaagtcaataccaccagaccaacccaagtgggtt 98  Q
    ||||| ||||||||||||  || ||| |||||||||||  |||||||||||||||||    
T  40281112 aggaggagcacactctcatatcccaaatcaataccacctaaccaacccaagtgggtt 40281168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 66; Significance: 4e-29; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 112 - 261
Target Start/End: Original strand, 7490543 - 7490692
Alignment:
Q  112 ataaagacttaaaatgtaaaaatatataactatacataagtaaatctcattcatataattcattaagagtaacaacatcattccatacatcaacttaatt 211  Q
    |||||||||||||||| ||||||| |||  ||| ||||||||||||||||||||||| |   | |||||||||||  ||  || || ||||||||||| |    
T  7490543 ataaagacttaaaatgcaaaaatacatagatattcataagtaaatctcattcatatattagttcaagagtaacaaattcgatcgattcatcaacttaact 7490642  T
Q  212 aaaacaatagataaagtatgtagtttaaacattcaaaaatcgaaacacta 261  Q
    ||||||||||||||| ||  ||||||||||||||||||| ||||||||||    
T  7490643 aaaacaatagataaaatacatagtttaaacattcaaaaaccgaaacacta 7490692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 42 - 99
Target Start/End: Original strand, 5499427 - 5499484
Alignment:
Q  42 aggagaagcacactctcaagtctcaagtcaataccaccagaccaacccaagtgggttt 99  Q
    ||||| ||||||||||||  |||||||||||||||||||| |||||||||||||||||    
T  5499427 aggaggagcacactctcagatctcaagtcaataccaccaggccaacccaagtgggttt 5499484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 39 - 99
Target Start/End: Original strand, 39976448 - 39976508
Alignment:
Q  39 ttgaggagaagcacactctcaagtctcaagtcaataccaccagaccaacccaagtgggttt 99  Q
    ||||| || |||||||||||||||| |||||||||||||||  ||||||| ||||||||||    
T  39976448 ttgagaaggagcacactctcaagtcccaagtcaataccaccgaaccaacctaagtgggttt 39976508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 43 - 98
Target Start/End: Original strand, 31510739 - 31510794
Alignment:
Q  43 ggagaagcacactctcaagtctcaagtcaataccaccagaccaacccaagtgggtt 98  Q
    |||| |||| |||| |||||| |||||||||||||||||||||||| |||||||||    
T  31510739 ggaggagcatactcccaagtcccaagtcaataccaccagaccaacctaagtgggtt 31510794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 41 - 99
Target Start/End: Complemental strand, 36720438 - 36720380
Alignment:
Q  41 gaggagaagcacactctcaagtctcaagtcaataccaccagaccaacccaagtgggttt 99  Q
    |||||| ||||||||| ||  || |||| ||||||||||||||||||||||||||||||    
T  36720438 gaggaggagcacactcccatatcccaagccaataccaccagaccaacccaagtgggttt 36720380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 47 - 99
Target Start/End: Complemental strand, 24481632 - 24481580
Alignment:
Q  47 aagcacactctcaagtctcaagtcaataccaccagaccaacccaagtgggttt 99  Q
    ||||||||||||||||| |||  ||||||||| |||||||| |||||||||||    
T  24481632 aagcacactctcaagtcccaaaccaataccactagaccaactcaagtgggttt 24481580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 99
Target Start/End: Original strand, 27093378 - 27093438
Alignment:
Q  39 ttgaggagaagcacactctcaagtctcaagtcaataccaccagaccaacccaagtgggttt 99  Q
    |||||||| ||||||||| |||||  |||| ||||||||| || |||||||||||||||||    
T  27093378 ttgaggaggagcacactcccaagttccaagccaataccactaggccaacccaagtgggttt 27093438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 39 - 98
Target Start/End: Original strand, 17108915 - 17108974
Alignment:
Q  39 ttgaggagaagcacactctcaagtctcaagtcaataccaccagaccaacccaagtgggtt 98  Q
    |||||||| ||||||||| ||  |||| |||||||||||||| || ||||||||||||||    
T  17108915 ttgaggaggagcacactcccacatctccagtcaataccaccaaactaacccaagtgggtt 17108974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 39 - 98
Target Start/End: Complemental strand, 19341860 - 19341801
Alignment:
Q  39 ttgaggagaagcacactctcaagtctcaagtcaataccaccagaccaacccaagtgggtt 98  Q
    |||||||| ||||||||| ||||||||||||| ||||||| ||  |||||||| ||||||    
T  19341860 ttgaggaggagcacactcccaagtctcaagtctataccactagggcaacccaaatgggtt 19341801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 43 - 98
Target Start/End: Original strand, 47810765 - 47810820
Alignment:
Q  43 ggagaagcacactctcaagtctcaagtcaataccaccagaccaacccaagtgggtt 98  Q
    |||| ||||||||| |||| |  ||| |||||||||||||||||||||||||||||    
T  47810765 ggaggagcacactcccaagaccaaagccaataccaccagaccaacccaagtgggtt 47810820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 41 - 91
Target Start/End: Original strand, 4844530 - 4844580
Alignment:
Q  41 gaggagaagcacactctcaagtctcaagtcaataccaccagaccaacccaa 91  Q
    |||||| ||||||||| ||  || |||||||||||||||||||||||||||    
T  4844530 gaggaggagcacactcccagatcccaagtcaataccaccagaccaacccaa 4844580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 41 - 91
Target Start/End: Original strand, 4870226 - 4870276
Alignment:
Q  41 gaggagaagcacactctcaagtctcaagtcaataccaccagaccaacccaa 91  Q
    |||||| ||||||||| ||  || |||||||||||||||||||||||||||    
T  4870226 gaggaggagcacactcccagatcccaagtcaataccaccagaccaacccaa 4870276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 41 - 99
Target Start/End: Complemental strand, 8051271 - 8051213
Alignment:
Q  41 gaggagaagcacactctcaagtctcaagtcaataccaccagaccaacccaagtgggttt 99  Q
    ||||||||||| |||  || ||| |||| |||||||||||| |||||||||||||||||    
T  8051271 gaggagaagcatactgccaggtcccaagccaataccaccaggccaacccaagtgggttt 8051213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 96
Target Start/End: Complemental strand, 8390696 - 8390639
Alignment:
Q  39 ttgaggagaagcacactctcaagtctcaagtcaataccaccagaccaacccaagtggg 96  Q
    |||||||  ||||||||  ||||||||||| ||||||||| ||||||| |||||||||    
T  8390696 ttgaggaagagcacacttccaagtctcaaggcaataccactagaccaatccaagtggg 8390639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 98
Target Start/End: Complemental strand, 21960608 - 21960551
Alignment:
Q  41 gaggagaagcacactctcaagtctcaagtcaataccaccagaccaacccaagtgggtt 98  Q
    |||||| |||||||||||| ||| |||| ||||||||||||  |||||||| ||||||    
T  21960608 gaggaggagcacactctcaggtcccaagccaataccaccagcgcaacccaattgggtt 21960551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 99
Target Start/End: Complemental strand, 36797743 - 36797686
Alignment:
Q  42 aggagaagcacactctcaagtctcaagtcaataccaccagaccaacccaagtgggttt 99  Q
    ||||| ||||||||||||  | ||||||||||| || |||||||||||||||| ||||    
T  36797743 aggaggagcacactctcatatttcaagtcaatatcatcagaccaacccaagtgagttt 36797686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 100
Target Start/End: Complemental strand, 53413004 - 53412943
Alignment:
Q  39 ttgaggagaagcacactctcaagtctcaagtcaataccaccagaccaacccaagtgggtttc 100  Q
    |||||||| ||||||||| || ||  |||| ||||||||| |||||||||||||||| ||||    
T  53413004 ttgaggaggagcacactcccaggttacaagccaataccactagaccaacccaagtggctttc 53412943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 98
Target Start/End: Original strand, 2597268 - 2597296
Alignment:
Q  70 caataccaccagaccaacccaagtgggtt 98  Q
    |||||||||||||||||||||||||||||    
T  2597268 caataccaccagaccaacccaagtgggtt 2597296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 44 - 96
Target Start/End: Original strand, 10682965 - 10683017
Alignment:
Q  44 gagaagcacactctcaagtctcaagtcaataccaccagaccaacccaagtggg 96  Q
    |||||||||||||  | |||||||| ||||||||| ||| |||||||||||||    
T  10682965 gagaagcacactccaaggtctcaagccaataccactagatcaacccaagtggg 10683017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 50 - 90
Target Start/End: Complemental strand, 12761560 - 12761520
Alignment:
Q  50 cacactctcaagtctcaagtcaataccaccagaccaaccca 90  Q
    ||||||| || ||| ||||||||||||||||||||||||||    
T  12761560 cacactcccaggtcccaagtcaataccaccagaccaaccca 12761520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 42 - 98
Target Start/End: Original strand, 16212992 - 16213048
Alignment:
Q  42 aggagaagcacactctcaagtctcaagtcaataccaccagaccaacccaagtgggtt 98  Q
    ||||| ||||||||| ||||||||||| ||| | ||  |||||||||||||||||||    
T  16212992 aggaggagcacactcccaagtctcaaggcaacatcattagaccaacccaagtgggtt 16213048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 67 - 99
Target Start/End: Original strand, 34622567 - 34622599
Alignment:
Q  67 agtcaataccaccagaccaacccaagtgggttt 99  Q
    |||||||||||| ||||||||||||||||||||    
T  34622567 agtcaataccactagaccaacccaagtgggttt 34622599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 6e-22; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 142 - 263
Target Start/End: Original strand, 11648058 - 11648179
Alignment:
Q  142 tatacataagtaaatctcattcatataattcattaagagtaacaacatcattccatacatcaacttaattaaaacaatagataaagtatgtagtttaaac 241  Q
    ||||||||||||||||||||||||||| |   | |||||||||||  ||  || |||||||||||||| |||||| ||||||||| || | |||||||||    
T  11648058 tatacataagtaaatctcattcatatattagttcaagagtaacaaattcgatcgatacatcaacttaactaaaacgatagataaaatacgaagtttaaac 11648157  T
Q  242 attcaaaaatcgaaacactagt 263  Q
    ||||||||| | ||||||||||    
T  11648158 attcaaaaaccaaaacactagt 11648179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 39 - 98
Target Start/End: Original strand, 22995128 - 22995187
Alignment:
Q  39 ttgaggagaagcacactctcaagtctcaagtcaataccaccagaccaacccaagtgggtt 98  Q
    |||||||||| ||||||| ||||| |||||||||||||||||||||||| ||||||||||    
T  22995128 ttgaggagaaacacactcacaagtttcaagtcaataccaccagaccaactcaagtgggtt 22995187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 39 - 98
Target Start/End: Complemental strand, 23793272 - 23793213
Alignment:
Q  39 ttgaggagaagcacactctcaagtctcaagtcaataccaccagaccaacccaagtgggtt 98  Q
    |||||||||| ||||||| ||||| |||||||||||||||||||||||| ||||||||||    
T  23793272 ttgaggagaaacacactcacaagtttcaagtcaataccaccagaccaactcaagtgggtt 23793213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 39 - 96
Target Start/End: Original strand, 22995052 - 22995109
Alignment:
Q  39 ttgaggagaagcacactctcaagtctcaagtcaataccaccagaccaacccaagtggg 96  Q
    |||||||||| ||||||| ||||| |||||||||||||||||||||||| ||||||||    
T  22995052 ttgaggagaaacacactcacaagtttcaagtcaataccaccagaccaactcaagtggg 22995109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 39 - 96
Target Start/End: Complemental strand, 23793348 - 23793291
Alignment:
Q  39 ttgaggagaagcacactctcaagtctcaagtcaataccaccagaccaacccaagtggg 96  Q
    |||||||||| ||||||| ||||| |||||||||||||||||||||||| ||||||||    
T  23793348 ttgaggagaaacacactcacaagtttcaagtcaataccaccagaccaactcaagtggg 23793291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 118 - 174
Target Start/End: Original strand, 14288577 - 14288633
Alignment:
Q  118 acttaaaatgtaaaaatatataactatacataagtaaatctcattcatataattcat 174  Q
    |||||||||| ||||||||||||||||| || | |||||||||||||||||||||||    
T  14288577 acttaaaatgcaaaaatatataactataaatgactaaatctcattcatataattcat 14288633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 41 - 99
Target Start/End: Complemental strand, 33549161 - 33549103
Alignment:
Q  41 gaggagaagcacactctcaagtctcaagtcaataccaccagaccaacccaagtgggttt 99  Q
    |||||| ||||||||| || ||| |||| ||||||||||||||||||||||||||||||    
T  33549161 gaggaggagcacactcccaggtcccaagccaataccaccagaccaacccaagtgggttt 33549103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 41 - 99
Target Start/End: Original strand, 31623010 - 31623068
Alignment:
Q  41 gaggagaagcacactctcaagtctcaagtcaataccaccagaccaacccaagtgggttt 99  Q
    |||||| ||||||||| || ||| |||| |||||||||| |||||||||||||||||||    
T  31623010 gaggaggagcacactcccaggtcccaagccaataccaccggaccaacccaagtgggttt 31623068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 41 - 98
Target Start/End: Complemental strand, 11423623 - 11423566
Alignment:
Q  41 gaggagaagcacactctcaagtctcaagtcaataccaccagaccaacccaagtgggtt 98  Q
    ||||||||||| |||| ||| || ||||||||||||||||||||| |||||| |||||    
T  11423623 gaggagaagcatactcccaaatcccaagtcaataccaccagaccagcccaagcgggtt 11423566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 41 - 98
Target Start/End: Complemental strand, 21418527 - 21418470
Alignment:
Q  41 gaggagaagcacactctcaagtctcaagtcaataccaccagaccaacccaagtgggtt 98  Q
    |||||| ||||||||| |||||| |||| |||||||||||| ||||||||| ||||||    
T  21418527 gaggaggagcacactcccaagtcccaagccaataccaccaggccaacccaactgggtt 21418470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 91
Target Start/End: Original strand, 3968215 - 3968263
Alignment:
Q  43 ggagaagcacactctcaagtctcaagtcaataccaccagaccaacccaa 91  Q
    |||| |||||||||| |||||||||||||||||||  ||||||||||||    
T  3968215 ggaggagcacactctaaagtctcaagtcaataccaatagaccaacccaa 3968263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 99
Target Start/End: Original strand, 12188320 - 12188380
Alignment:
Q  39 ttgaggagaagcacactctcaagtctcaagtcaataccaccagaccaacccaagtgggttt 99  Q
    |||||||| ||||||||| || ||| |||| ||||||||| || |||||||||||||||||    
T  12188320 ttgaggaggagcacactcccaggtcccaagccaataccactaggccaacccaagtgggttt 12188380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 48 - 99
Target Start/End: Original strand, 12234533 - 12234584
Alignment:
Q  48 agcacactctcaagtctcaagtcaataccaccagaccaacccaagtgggttt 99  Q
    ||||||||| || ||| ||||||||||||||||| |||||| ||||||||||    
T  12234533 agcacactcccaggtcccaagtcaataccaccaggccaacctaagtgggttt 12234584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 193 - 240
Target Start/End: Original strand, 12354084 - 12354131
Alignment:
Q  193 tccatacatcaacttaattaaaacaatagataaagtatgtagtttaaa 240  Q
    ||||||||||||||||| |||||||| ||||||||||  |||||||||    
T  12354084 tccatacatcaacttaactaaaacaaaagataaagtacctagtttaaa 12354131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 186
Target Start/End: Original strand, 9882075 - 9882153
Alignment:
Q  109 ttaataaagacttaaaatgtaaaaatatataactatacataagtaaatctcattcatataattc-attaagagtaacaa 186  Q
    |||||||| |||||||||| | ||||||||||||| | |||   ||||||||||||| ||||||  |||||||||||||    
T  9882075 ttaataaatacttaaaatgcagaaatatataactaaaaatatcaaaatctcattcatgtaattcttttaagagtaacaa 9882153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 296 - 346
Target Start/End: Original strand, 12354251 - 12354301
Alignment:
Q  296 tccataaaatatctaagtattttctagtgatgttgcttcaatgatcctcaa 346  Q
    |||||||||||||||| ||||  | | ||||||||||||||||||||||||    
T  12354251 tccataaaatatctaaatattccccaatgatgttgcttcaatgatcctcaa 12354301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 86
Target Start/End: Original strand, 13469162 - 13469200
Alignment:
Q  48 agcacactctcaagtctcaagtcaataccaccagaccaa 86  Q
    |||||||||||| ||||||||| ||||||||||||||||    
T  13469162 agcacactctcatgtctcaagttaataccaccagaccaa 13469200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 186
Target Start/End: Original strand, 22216286 - 22216364
Alignment:
Q  109 ttaataaagacttaaaatgtaaaaatatataactatacataagtaaatctcattcatataattcatt-aagagtaacaa 186  Q
    |||||||| |||||||||  | ||||| ||||||| | |||   ||||||||||||||||||||||| |||||||||||    
T  22216286 ttaataaatacttaaaatacataaataaataactaaaaatatccaaatctcattcatataattcattcaagagtaacaa 22216364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 101
Target Start/End: Complemental strand, 13441100 - 13441047
Alignment:
Q  48 agcacactctcaagtctcaagtcaataccaccagaccaacccaagtgggtttca 101  Q
    ||||||||| || ||| |||| |||||||||| ||||||||||||||| |||||    
T  13441100 agcacactcccaggtcccaagccaataccacccgaccaacccaagtggatttca 13441047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 98
Target Start/End: Complemental strand, 14558019 - 14557962
Alignment:
Q  41 gaggagaagcacactctcaagtctcaagtcaataccaccagaccaacccaagtgggtt 98  Q
    |||||| ||||||||  || ||| |||| ||| |||||||||||||||||||||||||    
T  14558019 gaggaggagcacacttccaggtcccaagccaacaccaccagaccaacccaagtgggtt 14557962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 98
Target Start/End: Complemental strand, 30127433 - 30127400
Alignment:
Q  65 caagtcaataccaccagaccaacccaagtgggtt 98  Q
    |||| |||||||||||||||||||||||||||||    
T  30127433 caagccaataccaccagaccaacccaagtgggtt 30127400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 92
Target Start/End: Complemental strand, 34444858 - 34444809
Alignment:
Q  43 ggagaagcacactctcaagtctcaagtcaataccaccagaccaacccaag 92  Q
    |||| |||||||||| | ||| ||||||||||||||||| ||||||||||    
T  34444858 ggaggagcacactctaaggtcccaagtcaataccaccaggccaacccaag 34444809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 88
Target Start/End: Original strand, 6558684 - 6558732
Alignment:
Q  40 tgaggagaagcacactctcaagtctcaagtcaataccaccagaccaacc 88  Q
    ||||||||| |||| |  ||||||||||||||||||||| |||||||||    
T  6558684 tgaggagaaacacagtaccaagtctcaagtcaataccactagaccaacc 6558732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 91
Target Start/End: Complemental strand, 8268697 - 8268645
Alignment:
Q  39 ttgaggagaagcacactctcaagtctcaagtcaataccaccagaccaacccaa 91  Q
    |||||||| ||||||||| ||| ||||||| ||| |||| |||||||||||||    
T  8268697 ttgaggaggagcacactcccaaatctcaaggcaacaccatcagaccaacccaa 8268645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 99
Target Start/End: Original strand, 14199964 - 14200024
Alignment:
Q  39 ttgaggagaagcacactctcaagtctcaagtcaataccaccagaccaacccaagtgggttt 99  Q
    |||||||| ||||||||| ||||||||||| | ||||| | ||| |||||||| |||||||    
T  14199964 ttgaggaggagcacactcccaagtctcaagcctatacctctagagcaacccaaatgggttt 14200024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 6e-16; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 39 - 98
Target Start/End: Complemental strand, 22760922 - 22760863
Alignment:
Q  39 ttgaggagaagcacactctcaagtctcaagtcaataccaccagaccaacccaagtgggtt 98  Q
    |||||||| ||||||||| || ||| ||||||||||||||||||||||||||||||||||    
T  22760922 ttgaggaggagcacactcccaggtcccaagtcaataccaccagaccaacccaagtgggtt 22760863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 42 - 98
Target Start/End: Original strand, 23301622 - 23301678
Alignment:
Q  42 aggagaagcacactctcaagtctcaagtcaataccaccagaccaacccaagtgggtt 98  Q
    ||||| ||||||||| |||||| ||||||||||||||||| ||||||||||||||||    
T  23301622 aggaggagcacactcccaagtcccaagtcaataccaccaggccaacccaagtgggtt 23301678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 41 - 100
Target Start/End: Complemental strand, 2446365 - 2446306
Alignment:
Q  41 gaggagaagcacactctcaagtctcaagtcaataccaccagaccaacccaagtgggtttc 100  Q
    |||||| ||||||||| |||||| |||| |||||||| ||||||||||||||||||||||    
T  2446365 gaggaggagcacactcccaagtcccaagccaataccatcagaccaacccaagtgggtttc 2446306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 118 - 250
Target Start/End: Complemental strand, 37078392 - 37078260
Alignment:
Q  118 acttaaaatgtaaaaatatataactatacataagtaaatctcattcatataattcatt-aagagtaacaacatcattccatacatcaacttaattaaaac 216  Q
    |||||||||| |||| |||||||  ||| || | |||||||||||||||||||||||  ||||||||| |||    ||||| ||||||||||||||||||    
T  37078392 acttaaaatgcaaaattatataag-ataaatgactaaatctcattcatataattcatccaagagtaactacaatgatccatgcatcaacttaattaaaac 37078294  T
Q  217 aatagataaagtatgtagtttaaacattcaaaaa 250  Q
    | | |||||| |   ||||| |||||||||||||    
T  37078293 agtggataaaatgcatagttaaaacattcaaaaa 37078260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 39 - 99
Target Start/End: Complemental strand, 23595788 - 23595728
Alignment:
Q  39 ttgaggagaagcacactctcaagtctcaagtcaataccaccagaccaacccaagtgggttt 99  Q
    |||||||| |||||||||  |  ||||||||||||||||||||||||||||||||| ||||    
T  23595788 ttgaggaggagcacactccgagatctcaagtcaataccaccagaccaacccaagtgagttt 23595728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 39 - 99
Target Start/End: Complemental strand, 26526349 - 26526289
Alignment:
Q  39 ttgaggagaagcacactctcaagtctcaagtcaataccaccagaccaacccaagtgggttt 99  Q
    |||||||| ||||||||||||| ||  ||||||||||||||||||||| |||| |||||||    
T  26526349 ttgaggaggagcacactctcaaatcctaagtcaataccaccagaccaatccaaatgggttt 26526289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 42 - 101
Target Start/End: Complemental strand, 38917150 - 38917092
Alignment:
Q  42 aggagaagcacactctcaagtctcaagtcaataccaccagaccaacccaagtgggtttca 101  Q
    |||||||||||| ||| ||||||||||| |||||||| |||||||| |||||||||||||    
T  38917150 aggagaagcacattct-aagtctcaagttaataccactagaccaactcaagtgggtttca 38917092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 39 - 98
Target Start/End: Complemental strand, 43590966 - 43590907
Alignment:
Q  39 ttgaggagaagcacactctcaagtctcaagtcaataccaccagaccaacccaagtgggtt 98  Q
    |||||||| ||||||||| |||||| |||| |||||||||||| ||||||||| ||||||    
T  43590966 ttgaggaggagcacactcccaagtcccaagccaataccaccaggccaacccaactgggtt 43590907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 41 - 91
Target Start/End: Complemental strand, 33362689 - 33362639
Alignment:
Q  41 gaggagaagcacactctcaagtctcaagtcaataccaccagaccaacccaa 91  Q
    |||||| |||||| |||||| ||||||||||||||||||| ||||||||||    
T  33362689 gaggaggagcacattctcaaatctcaagtcaataccaccataccaacccaa 33362639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 42 - 99
Target Start/End: Original strand, 18056795 - 18056852
Alignment:
Q  42 aggagaagcacactctcaagtctcaagtcaataccaccagaccaacccaagtgggttt 99  Q
    ||||| |||||||||  ||| | ||||||||||||||||||| |||||||||||||||    
T  18056795 aggaggagcacactccgaagacccaagtcaataccaccagactaacccaagtgggttt 18056852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 41 - 98
Target Start/End: Original strand, 20335850 - 20335907
Alignment:
Q  41 gaggagaagcacactctcaagtctcaagtcaataccaccagaccaacccaagtgggtt 98  Q
    |||||| ||||||||| |||||| |||| ||||||| | |||||||||||||||||||    
T  20335850 gaggaggagcacactcccaagtcccaagccaatacctctagaccaacccaagtgggtt 20335907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 39 - 100
Target Start/End: Complemental strand, 23552177 - 23552116
Alignment:
Q  39 ttgaggagaagcacactctcaagtctcaagtcaataccaccagaccaacccaagtgggtttc 100  Q
    |||||||| ||||||||| || ||| |||||||||| ||| || ||||||||||||||||||    
T  23552177 ttgaggaggagcacactcccaggtcccaagtcaatagcactaggccaacccaagtgggtttc 23552116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 41 - 98
Target Start/End: Complemental strand, 27776229 - 27776172
Alignment:
Q  41 gaggagaagcacactctcaagtctcaagtcaataccaccagaccaacccaagtgggtt 98  Q
    |||||| |||||||||||||||| ||||   |||||||||| ||||||||||||||||    
T  27776229 gaggaggagcacactctcaagtcccaagcgtataccaccaggccaacccaagtgggtt 27776172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 98
Target Start/End: Complemental strand, 24513853 - 24513797
Alignment:
Q  42 aggagaagcacactctcaagtctcaagtcaataccaccagaccaacccaagtgggtt 98  Q
    |||||||| |||||| ||| ||||||| ||||||||| || ||||||||||||||||    
T  24513853 aggagaagtacactcccaaatctcaagccaataccactaggccaacccaagtgggtt 24513797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 91
Target Start/End: Original strand, 28115903 - 28115935
Alignment:
Q  59 aagtctcaagtcaataccaccagaccaacccaa 91  Q
    |||||||||||||||||||||||||||||||||    
T  28115903 aagtctcaagtcaataccaccagaccaacccaa 28115935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 99
Target Start/End: Complemental strand, 30579382 - 30579334
Alignment:
Q  51 acactctcaagtctcaagtcaataccaccagaccaacccaagtgggttt 99  Q
    |||||| || |||||||| |||||||||||| |||||||||||||||||    
T  30579382 acactcccaggtctcaagccaataccaccaggccaacccaagtgggttt 30579334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 99
Target Start/End: Complemental strand, 41487409 - 41487361
Alignment:
Q  51 acactctcaagtctcaagtcaataccaccagaccaacccaagtgggttt 99  Q
    |||||| |||||| |||| |||||||||||| |||||||||||||||||    
T  41487409 acactcccaagtcccaagccaataccaccaggccaacccaagtgggttt 41487361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 99
Target Start/End: Complemental strand, 43215243 - 43215183
Alignment:
Q  39 ttgaggagaagcacactctcaagtctcaagtcaataccaccagaccaacccaagtgggttt 99  Q
    |||||||| |||||||||  | ||| |||| ||||||||| ||||||||||||||||||||    
T  43215243 ttgaggaggagcacactccgaggtcccaagccaataccactagaccaacccaagtgggttt 43215183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 39 - 98
Target Start/End: Original strand, 5273607 - 5273666
Alignment:
Q  39 ttgaggagaagcacactctcaagtctcaagtcaataccaccagaccaacccaagtgggtt 98  Q
    |||||||| |||||||||| | ||| |||| ||| |||||||| ||||||||||||||||    
T  5273607 ttgaggaggagcacactctaaggtcccaagccaacaccaccaggccaacccaagtgggtt 5273666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 39 - 98
Target Start/End: Complemental strand, 7801239 - 7801180
Alignment:
Q  39 ttgaggagaagcacactctcaagtctcaagtcaataccaccagaccaacccaagtgggtt 98  Q
    |||| ||| ||||||||| || ||| ||||||||||||||||| |||| |||||||||||    
T  7801239 ttgaagaggagcacactcccaggtcccaagtcaataccaccaggccaaaccaagtgggtt 7801180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 39 - 98
Target Start/End: Complemental strand, 15137612 - 15137553
Alignment:
Q  39 ttgaggagaagcacactctcaagtctcaagtcaataccaccagaccaacccaagtgggtt 98  Q
    |||||||| |||||||||  || || ||||||| ||||||||| ||||||||||||||||    
T  15137612 ttgaggaggagcacactcctaaatcccaagtcagtaccaccaggccaacccaagtgggtt 15137553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 39 - 98
Target Start/End: Complemental strand, 18363755 - 18363696
Alignment:
Q  39 ttgaggagaagcacactctcaagtctcaagtcaataccaccagaccaacccaagtgggtt 98  Q
    |||||||| ||||||||| ||| ||||||| | ||||||| || ||||||||||||||||    
T  18363755 ttgaggaggagcacactcccaaatctcaagcctataccactaggccaacccaagtgggtt 18363696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 39 - 98
Target Start/End: Original strand, 25021352 - 25021411
Alignment:
Q  39 ttgaggagaagcacactctcaagtctcaagtcaataccaccagaccaacccaagtgggtt 98  Q
    |||||||| ||||||||| || ||| |||| ||||||||| || ||||||||||||||||    
T  25021352 ttgaggaggagcacactcccaggtcccaagccaataccactaggccaacccaagtgggtt 25021411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 39 - 98
Target Start/End: Original strand, 26459427 - 26459486
Alignment:
Q  39 ttgaggagaagcacactctcaagtctcaagtcaataccaccagaccaacccaagtgggtt 98  Q
    |||||||| ||||||||| || ||| |||| ||||||||| || ||||||||||||||||    
T  26459427 ttgaggaggagcacactcccaggtcccaagccaataccactaggccaacccaagtgggtt 26459486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 212 - 266
Target Start/End: Complemental strand, 1847072 - 1847018
Alignment:
Q  212 aaaacaatagataaagtatgtagtttaaacattcaaaaatcgaaacactagtggt 266  Q
    ||||||| ||||||||||  | ||||||||||||||||| | |||||||||||||    
T  1847072 aaaacaagagataaagtacatggtttaaacattcaaaaaccaaaacactagtggt 1847018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 100
Target Start/End: Original strand, 38374616 - 38374677
Alignment:
Q  39 ttgaggagaagcacactctcaagtctcaagtcaataccaccagaccaacccaagtgggtttc 100  Q
    |||||||| |||||||||| | ||| |||| ||| |||||||  ||||||||||||||||||    
T  38374616 ttgaggaggagcacactctaaggtcccaagccaacaccaccacgccaacccaagtgggtttc 38374677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 41 - 97
Target Start/End: Complemental strand, 35513523 - 35513467
Alignment:
Q  41 gaggagaagcacactctcaagtctcaagtcaataccaccagaccaacccaagtgggt 97  Q
    |||||| |||||||||||||||| ||||  |||||||| || ||||||||| |||||    
T  35513523 gaggaggagcacactctcaagtcccaagcaaataccactaggccaacccaaatgggt 35513467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 91
Target Start/End: Original strand, 36803644 - 36803696
Alignment:
Q  39 ttgaggagaagcacactctcaagtctcaagtcaataccaccagaccaacccaa 91  Q
    |||||||| |||| |||| || ||| |||||||||||||| ||||||||||||    
T  36803644 ttgaggaggagcatactcccaggtcccaagtcaataccactagaccaacccaa 36803696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 233 - 281
Target Start/End: Complemental strand, 48631411 - 48631363
Alignment:
Q  233 agtttaaacattcaaaaatcgaaacactagtggtcgaacatttaaaaca 281  Q
    ||||||||||||||||||  |||||||||||| | ||||||| ||||||    
T  48631411 agtttaaacattcaaaaaatgaaacactagtgattgaacattcaaaaca 48631363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 6e-16; HSPs: 29)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 39 - 98
Target Start/End: Complemental strand, 35916145 - 35916086
Alignment:
Q  39 ttgaggagaagcacactctcaagtctcaagtcaataccaccagaccaacccaagtgggtt 98  Q
    |||||||| | |||||||| || |||||||||||||||||||||||||||||||||||||    
T  35916145 ttgaggaggaacacactcttaaatctcaagtcaataccaccagaccaacccaagtgggtt 35916086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 41 - 98
Target Start/End: Complemental strand, 19016088 - 19016031
Alignment:
Q  41 gaggagaagcacactctcaagtctcaagtcaataccaccagaccaacccaagtgggtt 98  Q
    |||||| ||||||||| ||||||||||| |||||||| ||||||||||||||||||||    
T  19016088 gaggaggagcacactcccaagtctcaagccaataccatcagaccaacccaagtgggtt 19016031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 39 - 99
Target Start/End: Complemental strand, 37480134 - 37480074
Alignment:
Q  39 ttgaggagaagcacactctcaagtctcaagtcaataccaccagaccaacccaagtgggttt 99  Q
    |||||||| |||||||||||| ||| |||| |||||||||||| |||||||||||||||||    
T  37480134 ttgaggaggagcacactctcaggtcccaagccaataccaccaggccaacccaagtgggttt 37480074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 39 - 98
Target Start/End: Original strand, 23052540 - 23052599
Alignment:
Q  39 ttgaggagaagcacactctcaagtctcaagtcaataccaccagaccaacccaagtgggtt 98  Q
    |||||||||||||||||| |||||| |||| |||||||||||| |||||| |||||||||    
T  23052540 ttgaggagaagcacactcccaagtcccaagccaataccaccaggccaacctaagtgggtt 23052599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 42 - 99
Target Start/End: Original strand, 29197396 - 29197453
Alignment:
Q  42 aggagaagcacactctcaagtctcaagtcaataccaccagaccaacccaagtgggttt 99  Q
    ||||| ||||||||| |||||| ||||||||||||||||  |||||||||||||||||    
T  29197396 aggaggagcacactcccaagtcccaagtcaataccaccaagccaacccaagtgggttt 29197453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 39 - 99
Target Start/End: Original strand, 4060231 - 4060291
Alignment:
Q  39 ttgaggagaagcacactctcaagtctcaagtcaataccaccagaccaacccaagtgggttt 99  Q
    ||||||||||||||||||||| || ||||  ||||||||| || |||||||||||||||||    
T  4060231 ttgaggagaagcacactctcaggtttcaaaccaataccactaggccaacccaagtgggttt 4060291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 39 - 99
Target Start/End: Original strand, 30808664 - 30808724
Alignment:
Q  39 ttgaggagaagcacactctcaagtctcaagtcaataccaccagaccaacccaagtgggttt 99  Q
    |||||||| |||| | ||||| |||||||| ||||| ||||||||||||||||||||||||    
T  30808664 ttgaggaggagcatattctcaggtctcaagccaatatcaccagaccaacccaagtgggttt 30808724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 43 - 98
Target Start/End: Complemental strand, 19244164 - 19244109
Alignment:
Q  43 ggagaagcacactctcaagtctcaagtcaataccaccagaccaacccaagtgggtt 98  Q
    |||| |||||||||||| ||| |||||||||||||  |||||||||||||||||||    
T  19244164 ggaggagcacactctcaggtcccaagtcaataccagtagaccaacccaagtgggtt 19244109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 41 - 100
Target Start/End: Complemental strand, 39715049 - 39714990
Alignment:
Q  41 gaggagaagcacactctcaagtctcaagtcaataccaccagaccaacccaagtgggtttc 100  Q
    |||||| ||||||||| || ||| ||||||||||||||||  ||||||||||||||||||    
T  39715049 gaggaggagcacactcccaggtcccaagtcaataccaccatgccaacccaagtgggtttc 39714990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 41 - 99
Target Start/End: Complemental strand, 1729873 - 1729815
Alignment:
Q  41 gaggagaagcacactctcaagtctcaagtcaataccaccagaccaacccaagtgggttt 99  Q
    |||||| ||||||||| |||||| |||| ||||||||| || |||||||||||||||||    
T  1729873 gaggaggagcacactcccaagtcccaagccaataccactagcccaacccaagtgggttt 1729815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 41 - 99
Target Start/End: Original strand, 7799054 - 7799112
Alignment:
Q  41 gaggagaagcacactctcaagtctcaagtcaataccaccagaccaacccaagtgggttt 99  Q
    |||||| ||||||||| |||||| |||| ||||||||||||  ||||||||||||||||    
T  7799054 gaggaggagcacactcccaagtcccaagccaataccaccaggacaacccaagtgggttt 7799112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 109 - 186
Target Start/End: Complemental strand, 20424405 - 20424327
Alignment:
Q  109 ttaataaagacttaaaatgtaaaaatatataactatacataagtaaatctcattcatataattc-attaagagtaacaa 186  Q
    |||||||| |||||||||| | ||||||||||||| | |||   ||||||||||||||||||||  |||||||||||||    
T  20424405 ttaataaatacttaaaatgcagaaatatataactaaaaatatcaaaatctcattcatataattcttttaagagtaacaa 20424327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 91
Target Start/End: Complemental strand, 4881764 - 4881712
Alignment:
Q  39 ttgaggagaagcacactctcaagtctcaagtcaataccaccagaccaacccaa 91  Q
    |||||||| || |||||| |||||||||||||||||||||| || ||||||||    
T  4881764 ttgaggaggagaacactcccaagtctcaagtcaataccaccggatcaacccaa 4881712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 62 - 98
Target Start/End: Original strand, 5147719 - 5147755
Alignment:
Q  62 tctcaagtcaataccaccagaccaacccaagtgggtt 98  Q
    ||||||||||||||||| |||||||||||||||||||    
T  5147719 tctcaagtcaataccactagaccaacccaagtgggtt 5147755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 100
Target Start/End: Complemental strand, 14780556 - 14780504
Alignment:
Q  48 agcacactctcaagtctcaagtcaataccaccagaccaacccaagtgggtttc 100  Q
    |||||| |||||| |||||||||||||| ||| ||||||||||||||| ||||    
T  14780556 agcacattctcaaatctcaagtcaatactaccggaccaacccaagtggatttc 14780504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 98
Target Start/End: Complemental strand, 18259786 - 18259730
Alignment:
Q  42 aggagaagcacactctcaagtctcaagtcaataccaccagaccaacccaagtgggtt 98  Q
    ||||| ||||||||||||| ||||||| |||||||||||| ||||| ||| ||||||    
T  18259786 aggaggagcacactctcaaatctcaagccaataccaccaggccaactcaaatgggtt 18259730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 99
Target Start/End: Original strand, 34041605 - 34041665
Alignment:
Q  39 ttgaggagaagcacactctcaagtctcaagtcaataccaccagaccaacccaagtgggttt 99  Q
    |||||||| ||||||||||||  ||  ||||||||||||| || |||||||||||||||||    
T  34041605 ttgaggaggagcacactctcagatcctaagtcaataccactaggccaacccaagtgggttt 34041665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 39 - 98
Target Start/End: Complemental strand, 11062419 - 11062360
Alignment:
Q  39 ttgaggagaagcacactctcaagtctcaagtcaataccaccagaccaacccaagtgggtt 98  Q
    |||||||||||||||||| |||||  |||| ||||| ||| || ||||||||||||||||    
T  11062419 ttgaggagaagcacactcccaagttccaagccaatatcactaggccaacccaagtgggtt 11062360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 39 - 98
Target Start/End: Original strand, 42327412 - 42327471
Alignment:
Q  39 ttgaggagaagcacactctcaagtctcaagtcaataccaccagaccaacccaagtgggtt 98  Q
    |||||||| ||||||||| || ||| |||| ||||||||| || ||||||||||||||||    
T  42327412 ttgaggaggagcacactcccaggtcccaagccaataccactaggccaacccaagtgggtt 42327471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 99
Target Start/End: Original strand, 36317430 - 36317468
Alignment:
Q  61 gtctcaagtcaataccaccagaccaacccaagtgggttt 99  Q
    |||||||||||| |||| |||||||||||||||||||||    
T  36317430 gtctcaagtcaacaccatcagaccaacccaagtgggttt 36317468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 95
Target Start/End: Original strand, 7667489 - 7667542
Alignment:
Q  42 aggagaagcacactctcaagtctcaagtcaataccaccagaccaacccaagtgg 95  Q
    ||||| ||||||||| |||||| |||| ||||| |||| |||||||||||||||    
T  7667489 aggaggagcacactcccaagtcccaagccaatatcacccgaccaacccaagtgg 7667542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 81
Target Start/End: Complemental strand, 24393538 - 24393505
Alignment:
Q  48 agcacactctcaagtctcaagtcaataccaccag 81  Q
    ||||||||||||| ||||||||||||||||||||    
T  24393538 agcacactctcaaatctcaagtcaataccaccag 24393505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 98
Target Start/End: Complemental strand, 28846748 - 28846691
Alignment:
Q  41 gaggagaagcacactctcaagtctcaagtcaataccaccagaccaacccaagtgggtt 98  Q
    |||||| ||||||||| || ||| |||||||||||||| ||| ||||| |||||||||    
T  28846748 gaggaggagcacactcccaggtcccaagtcaataccactagatcaacctaagtgggtt 28846691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 99
Target Start/End: Complemental strand, 35710439 - 35710390
Alignment:
Q  50 cacactctcaagtctcaagtcaataccaccagaccaacccaagtgggttt 99  Q
    |||||||  ||||||||||||||| |||||||| |||| |||||||||||    
T  35710439 cacactcctaagtctcaagtcaatcccaccagatcaactcaagtgggttt 35710390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 98
Target Start/End: Complemental strand, 42860405 - 42860348
Alignment:
Q  41 gaggagaagcacactctcaagtctcaagtcaataccaccagaccaacccaagtgggtt 98  Q
    |||||| ||||||||| || |||||||||||||| |||||| ||||| ||||| ||||    
T  42860405 gaggaggagcacactcccaggtctcaagtcaatatcaccaggccaactcaagtaggtt 42860348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 42 - 98
Target Start/End: Original strand, 12994396 - 12994452
Alignment:
Q  42 aggagaagcacactctcaagtctcaagtcaataccaccagaccaacccaagtgggtt 98  Q
    ||||| ||||||||| || ||| |||||||||||||| |||||||| |||| |||||    
T  12994396 aggaggagcacactcccaggtcccaagtcaataccactagaccaactcaagcgggtt 12994452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 99
Target Start/End: Complemental strand, 29503330 - 29503270
Alignment:
Q  39 ttgaggagaagcacactctcaagtctcaagtcaataccaccagaccaacccaagtgggttt 99  Q
    |||||||| ||||||||| || ||| |||  ||||||||| || |||||||||||||||||    
T  29503330 ttgaggaggagcacactcccaggtcccaaaccaataccactaggccaacccaagtgggttt 29503270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 99
Target Start/End: Complemental strand, 41138386 - 41138326
Alignment:
Q  39 ttgaggagaagcacactctcaagtctcaagtcaataccaccagaccaacccaagtgggttt 99  Q
    |||||||| |||||||| ||| ||   ||||||| ||||||| ||||||||||||||||||    
T  41138386 ttgaggaggagcacactttcaggttctaagtcaacaccaccataccaacccaagtgggttt 41138326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 99
Target Start/End: Complemental strand, 42602613 - 42602553
Alignment:
Q  39 ttgaggagaagcacactctcaagtctcaagtcaataccaccagaccaacccaagtgggttt 99  Q
    ||||| || ||||||||| || ||| |||| ||||||||| || |||||||||||||||||    
T  42602613 ttgagaaggagcacactcccaggtcccaagccaataccactaggccaacccaagtgggttt 42602553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 30)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 39 - 99
Target Start/End: Complemental strand, 51814553 - 51814493
Alignment:
Q  39 ttgaggagaagcacactctcaagtctcaagtcaataccaccagaccaacccaagtgggttt 99  Q
    |||||||| ||||||||||||  |||||||||||||||| ||| |||||||||||||||||    
T  51814553 ttgaggaggagcacactctcagatctcaagtcaataccatcaggccaacccaagtgggttt 51814493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 41 - 99
Target Start/End: Complemental strand, 40257456 - 40257398
Alignment:
Q  41 gaggagaagcacactctcaagtctcaagtcaataccaccagaccaacccaagtgggttt 99  Q
    |||||| ||||||||| || |||||||| |||||||||||| |||||||||||||||||    
T  40257456 gaggaggagcacactcccaggtctcaagccaataccaccaggccaacccaagtgggttt 40257398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 39 - 104
Target Start/End: Original strand, 31794281 - 31794346
Alignment:
Q  39 ttgaggagaagcacactctcaagtctcaagtcaataccaccagaccaacccaagtgggtttcaagg 104  Q
    |||||||| ||||||||| |||||| |||| ||||||||| || |||||||||||||||| |||||    
T  31794281 ttgaggaggagcacactcccaagtcccaagccaataccactaggccaacccaagtgggttccaagg 31794346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 42 - 98
Target Start/End: Original strand, 4280471 - 4280527
Alignment:
Q  42 aggagaagcacactctcaagtctcaagtcaataccaccagaccaacccaagtgggtt 98  Q
    |||||||||||||||||||||| |||||||||| || || || ||||||||||||||    
T  4280471 aggagaagcacactctcaagtcccaagtcaatatcatcatactaacccaagtgggtt 4280527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 39 - 99
Target Start/End: Complemental strand, 29817734 - 29817674
Alignment:
Q  39 ttgaggagaagcacactctcaagtctcaagtcaataccaccagaccaacccaagtgggttt 99  Q
    |||| ||| |||||||||||| |||||||||||||| |||||| |||||||||||| ||||    
T  29817734 ttgaagaggagcacactctcaggtctcaagtcaatatcaccaggccaacccaagtgagttt 29817674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 42 - 98
Target Start/End: Complemental strand, 37400330 - 37400274
Alignment:
Q  42 aggagaagcacactctcaagtctcaagtcaataccaccagaccaacccaagtgggtt 98  Q
    ||||| |||||||| ||| |||||||| |||||||||||||||||||||||| ||||    
T  37400330 aggaggagcacactttcaggtctcaagccaataccaccagaccaacccaagttggtt 37400274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 41 - 100
Target Start/End: Original strand, 45235398 - 45235457
Alignment:
Q  41 gaggagaagcacactctcaagtctcaagtcaataccaccagaccaacccaagtgggtttc 100  Q
    |||||| ||||||||| |||||| |||  |||||||| ||||||||||||||||||||||    
T  45235398 gaggaggagcacactcccaagtcccaaaccaataccatcagaccaacccaagtgggtttc 45235457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 39 - 98
Target Start/End: Original strand, 48619226 - 48619285
Alignment:
Q  39 ttgaggagaagcacactctcaagtctcaagtcaataccaccagaccaacccaagtgggtt 98  Q
    ||||||| || ||||||| ||||||||||||||||||||||| | ||||| |||||||||    
T  48619226 ttgaggaaaaacacactcccaagtctcaagtcaataccaccatatcaacctaagtgggtt 48619285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 39 - 98
Target Start/End: Original strand, 52116798 - 52116857
Alignment:
Q  39 ttgaggagaagcacactctcaagtctcaagtcaataccaccagaccaacccaagtgggtt 98  Q
    |||||||| ||||||||| |||||| |||| |||||||||||| ||||||||| ||||||    
T  52116798 ttgaggaggagcacactcccaagtcccaagccaataccaccaggccaacccaactgggtt 52116857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 109 - 166
Target Start/End: Complemental strand, 19224314 - 19224256
Alignment:
Q  109 ttaataaagacttaaaatgtaaaaatatat-aactatacataagtaaatctcattcata 166  Q
    |||||||| |||||||||| |||||||||| ||||||| |||| |||||||||||||||    
T  19224314 ttaataaatacttaaaatgaaaaaatatataaactataaataactaaatctcattcata 19224256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 98
Target Start/End: Complemental strand, 21694496 - 21694446
Alignment:
Q  48 agcacactctcaagtctcaagtcaataccaccagaccaacccaagtgggtt 98  Q
    ||||||||| ||||||||||| ||||||||||||  |||||||||||||||    
T  21694496 agcacactcccaagtctcaagccaataccaccaggtcaacccaagtgggtt 21694446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 41 - 99
Target Start/End: Complemental strand, 25297829 - 25297771
Alignment:
Q  41 gaggagaagcacactctcaagtctcaagtcaataccaccagaccaacccaagtgggttt 99  Q
    |||||| ||||||||||||  ||  ||||||||||||| ||||||||||||||||||||    
T  25297829 gaggaggagcacactctcagatcctaagtcaataccactagaccaacccaagtgggttt 25297771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 40 - 98
Target Start/End: Complemental strand, 44961823 - 44961765
Alignment:
Q  40 tgaggagaagcacactctcaagtctcaagtcaataccaccagaccaacccaagtgggtt 98  Q
    ||||||| |||||||||| || |||||||  ||||||||| ||||||||||||||||||    
T  44961823 tgaggaggagcacactcttaaatctcaagctaataccacctgaccaacccaagtgggtt 44961765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 41 - 98
Target Start/End: Complemental strand, 2220029 - 2219972
Alignment:
Q  41 gaggagaagcacactctcaagtctcaagtcaataccaccagaccaacccaagtgggtt 98  Q
    ||||||||||||||| ||| ||  |||| ||||||||||||| |||||||||||||||    
T  2220029 gaggagaagcacactttcaggttccaagccaataccaccagaacaacccaagtgggtt 2219972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 212 - 265
Target Start/End: Complemental strand, 9326672 - 9326619
Alignment:
Q  212 aaaacaatagataaagtatgtagtttaaacattcaaaaatcgaaacactagtgg 265  Q
    ||||||||||||||||||  | ||||||||||||||||| | ||||||||||||    
T  9326672 aaaacaatagataaagtacatggtttaaacattcaaaaaccaaaacactagtgg 9326619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 41 - 94
Target Start/End: Original strand, 24047121 - 24047174
Alignment:
Q  41 gaggagaagcacactctcaagtctcaagtcaataccaccagaccaacccaagtg 94  Q
    |||||| ||||||||| ||||||||||| ||||||||  |||||||||||||||    
T  24047121 gaggaggagcacactcccaagtctcaagccaataccatgagaccaacccaagtg 24047174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 94
Target Start/End: Complemental strand, 9224831 - 9224779
Alignment:
Q  42 aggagaagcacactctcaagtctcaagtcaataccaccagaccaacccaagtg 94  Q
    |||||||||| |||||||  ||||||  |||||||||||||||||||||||||    
T  9224831 aggagaagcatactctcagatctcaaagcaataccaccagaccaacccaagtg 9224779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 51 - 90
Target Start/End: Original strand, 5032283 - 5032322
Alignment:
Q  51 acactctcaagtctcaagtcaataccaccagaccaaccca 90  Q
    |||||||||| ||||||||||||||||||| |||||||||    
T  5032283 acactctcaattctcaagtcaataccaccaaaccaaccca 5032322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 39 - 98
Target Start/End: Original strand, 9165212 - 9165271
Alignment:
Q  39 ttgaggagaagcacactctcaagtctcaagtcaataccaccagaccaacccaagtgggtt 98  Q
    |||||||| ||||||||| || ||| |||| ||||||||| || ||||||||||||||||    
T  9165212 ttgaggaggagcacactcccaggtcccaagccaataccactaggccaacccaagtgggtt 9165271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 39 - 98
Target Start/End: Original strand, 11438501 - 11438560
Alignment:
Q  39 ttgaggagaagcacactctcaagtctcaagtcaataccaccagaccaacccaagtgggtt 98  Q
    |||||||| | |||||||| || || ||||||||||||| ||||||||| ||||||||||    
T  11438501 ttgaggaggatcacactcttaaatcgcaagtcaataccatcagaccaactcaagtgggtt 11438560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 39 - 78
Target Start/End: Original strand, 14787353 - 14787392
Alignment:
Q  39 ttgaggagaagcacactctcaagtctcaagtcaataccac 78  Q
    |||||||||| |||||||||| ||||||||||||||||||    
T  14787353 ttgaggagaaacacactctcaggtctcaagtcaataccac 14787392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 39 - 98
Target Start/End: Original strand, 16169995 - 16170054
Alignment:
Q  39 ttgaggagaagcacactctcaagtctcaagtcaataccaccagaccaacccaagtgggtt 98  Q
    |||||||| | ||||||| || ||| ||||||||||||||||| | ||||||||||||||    
T  16169995 ttgaggaggaacacactcccaggtcccaagtcaataccaccaggctaacccaagtgggtt 16170054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 41 - 95
Target Start/End: Original strand, 8818142 - 8818196
Alignment:
Q  41 gaggagaagcacactctcaagtctcaagtcaataccaccagaccaacccaagtgg 95  Q
    |||||||||||||||| || ||| ||||||||||||| |||  ||||||||||||    
T  8818142 gaggagaagcacactcccaggtcacaagtcaataccatcaggtcaacccaagtgg 8818196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 97
Target Start/End: Complemental strand, 30759476 - 30759418
Alignment:
Q  39 ttgaggagaagcacactctcaagtctcaagtcaataccaccagaccaacccaagtgggt 97  Q
    |||||||| |||||| ||||| |||  |||||||||||||||||| |||| ||||||||    
T  30759476 ttgaggaggagcacaatctcatgtcctaagtcaataccaccagactaacctaagtgggt 30759418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 97
Target Start/End: Complemental strand, 44126450 - 44126396
Alignment:
Q  43 ggagaagcacactctcaagtctcaagtcaataccaccagaccaacccaagtgggt 97  Q
    |||| ||||||||| || ||| || |||||||||||||| |||||||||||||||    
T  44126450 ggaggagcacactcccaggtcccaggtcaataccaccaggccaacccaagtgggt 44126396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 100
Target Start/End: Complemental strand, 36371529 - 36371468
Alignment:
Q  39 ttgaggagaagcacactctcaagtctcaagtcaataccaccagaccaacccaagtgggtttc 100  Q
    |||||||| ||||||||| || ||  |||| ||||||||| || ||||||||||||||||||    
T  36371529 ttgaggaggagcacactcccaggttccaagccaataccactaggccaacccaagtgggtttc 36371468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 99
Target Start/End: Complemental strand, 8904473 - 8904413
Alignment:
Q  39 ttgaggagaagcacactctcaagtctcaagtcaataccaccagaccaacccaagtgggttt 99  Q
    |||||||| ||||||||| ||  || ||||||||||| || || |||||||||||||||||    
T  8904473 ttgaggaggagcacactcacatatcccaagtcaatactactaggccaacccaagtgggttt 8904413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 42 - 97
Target Start/End: Original strand, 18459251 - 18459307
Alignment:
Q  42 aggagaagcacactctcaagtctcaagtcaat-accaccagaccaacccaagtgggt 97  Q
    ||||| ||||||||| |||||| |||| |||| ||||| ||||||||||||||||||    
T  18459251 aggaggagcacactcccaagtcccaagccaattaccactagaccaacccaagtgggt 18459307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 91
Target Start/End: Complemental strand, 47720889 - 47720837
Alignment:
Q  39 ttgaggagaagcacactctcaagtctcaagtcaataccaccagaccaacccaa 91  Q
    |||||||| |||||||||  |  ||||||||||||||||||||| ||||||||    
T  47720889 ttgaggaggagcacactcctatatctcaagtcaataccaccagatcaacccaa 47720837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 91
Target Start/End: Complemental strand, 47727881 - 47727829
Alignment:
Q  39 ttgaggagaagcacactctcaagtctcaagtcaataccaccagaccaacccaa 91  Q
    |||||||| |||||||||  |  ||||||||||||||||||||| ||||||||    
T  47727881 ttgaggaggagcacactcctatatctcaagtcaataccaccagatcaacccaa 47727829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 39 - 98
Target Start/End: Complemental strand, 46545770 - 46545711
Alignment:
Q  39 ttgaggagaagcacactctcaagtctcaagtcaataccaccagaccaacccaagtgggtt 98  Q
    |||||||| |||||||||||| |||||||| ||||||||| || ||||||||||||||||    
T  46545770 ttgaggaggagcacactctcaggtctcaagccaataccactaggccaacccaagtgggtt 46545711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 41 - 98
Target Start/End: Original strand, 19238596 - 19238653
Alignment:
Q  41 gaggagaagcacactctcaagtctcaagtcaataccaccagaccaacccaagtgggtt 98  Q
    |||||| ||||||||| |||||| |||| |||||||||||| ||||||||||||||||    
T  19238596 gaggaggagcacactcccaagtcccaagccaataccaccaggccaacccaagtgggtt 19238653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 39 - 95
Target Start/End: Original strand, 20281209 - 20281265
Alignment:
Q  39 ttgaggagaagcacactctcaagtctcaagtcaataccaccagaccaacccaagtgg 95  Q
    |||||||| ||||| ||||||| || ||||||||||||||| |||||||||||||||    
T  20281209 ttgaggaggagcacgctctcaattcccaagtcaataccaccggaccaacccaagtgg 20281265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 48 - 99
Target Start/End: Original strand, 21660170 - 21660221
Alignment:
Q  48 agcacactctcaagtctcaagtcaataccaccagaccaacccaagtgggttt 99  Q
    ||||||||| ||  |||||||||||||||||||||||||||||||| |||||    
T  21660170 agcacactcccagatctcaagtcaataccaccagaccaacccaagttggttt 21660221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 48 - 99
Target Start/End: Original strand, 21668934 - 21668985
Alignment:
Q  48 agcacactctcaagtctcaagtcaataccaccagaccaacccaagtgggttt 99  Q
    ||||||||| ||  |||||||||||||||||||||||||||||||| |||||    
T  21668934 agcacactcccagatctcaagtcaataccaccagaccaacccaagttggttt 21668985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 39 - 98
Target Start/End: Original strand, 31759675 - 31759734
Alignment:
Q  39 ttgaggagaagcacactctcaagtctcaagtcaataccaccagaccaacccaagtgggtt 98  Q
    |||||||| ||||||||| |||||| |||| ||||||||| ||| |||||||||||||||    
T  31759675 ttgaggaggagcacactcccaagtcccaagccaataccactagatcaacccaagtgggtt 31759734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 193 - 341
Target Start/End: Complemental strand, 35185718 - 35185564
Alignment:
Q  193 tccatacatcaacttaattaaaacaatagataaagtatgtagtttaaacattcaaaaatc-gaaacactagtggtcgaacatttaaaacatttaaaacaa 291  Q
    ||||||||||||||||| |||||||| ||||| |  |   |||||||||||||||||| | ||||||||||||   ||||||| ||||||  |  | |||    
T  35185718 tccatacatcaacttaactaaaacaaaagatatatcaccaagtttaaacattcaaaaaaccgaaacactagtgactgaacattcaaaacagctgtagcaa 35185619  T
Q  292 gat-----gtccataaaatatctaagtattttctagtgatgttgcttcaatgatc 341  Q
     ||     ||||||||||||||||| ||||  |||||||||||||||| ||||||    
T  35185618 aattaaaagtccataaaatatctaaatattccctagtgatgttgcttcgatgatc 35185564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 41 - 98
Target Start/End: Original strand, 9936980 - 9937037
Alignment:
Q  41 gaggagaagcacactctcaagtctcaagtcaataccaccagaccaacccaagtgggtt 98  Q
    |||||| ||||||||| ||||||||||||| ||||||| || ||||||||||| ||||    
T  9936980 gaggaggagcacactcccaagtctcaagtcgataccactaggccaacccaagtaggtt 9937037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 95
Target Start/End: Original strand, 25869594 - 25869650
Alignment:
Q  39 ttgaggagaagcacactctcaagtctcaagtcaataccaccagaccaacccaagtgg 95  Q
    |||||||| ||||||||||||  |||||||||||||||| || || |||||||||||    
T  25869594 ttgaggaggagcacactctcagatctcaagtcaataccatcaaactaacccaagtgg 25869650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 39 - 98
Target Start/End: Complemental strand, 20216170 - 20216111
Alignment:
Q  39 ttgaggagaagcacactctcaagtctcaagtcaataccaccagaccaacccaagtgggtt 98  Q
    |||||||||| ||||||||||||||||||  ||||| || | || |||||||||||||||    
T  20216170 ttgaggagaaacacactctcaagtctcaaaccaatatcatctgatcaacccaagtgggtt 20216111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 39 - 98
Target Start/End: Original strand, 37109368 - 37109427
Alignment:
Q  39 ttgaggagaagcacactctcaagtctcaagtcaataccaccagaccaacccaagtgggtt 98  Q
    |||||||| ||||||||| || ||| |||| ||||||||| || ||||||||||||||||    
T  37109368 ttgaggaggagcacactcccaggtcccaagccaataccactaggccaacccaagtgggtt 37109427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 48 - 99
Target Start/End: Original strand, 49225456 - 49225507
Alignment:
Q  48 agcacactctcaagtctcaagtcaataccaccagaccaacccaagtgggttt 99  Q
    |||||||||||| | || ||| ||| ||||||||||||||||||||||||||    
T  49225456 agcacactctcaggccttaagccaacaccaccagaccaacccaagtgggttt 49225507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 39 - 102
Target Start/End: Original strand, 51250539 - 51250602
Alignment:
Q  39 ttgaggagaagcacactctcaagtctcaagtcaataccaccagaccaacccaagtgggtttcaa 102  Q
    |||||| | ||||||||| ||  || |||| |||||||||||| ||||||||||||||||||||    
T  51250539 ttgaggcggagcacactcccagatcccaagccaataccaccaggccaacccaagtgggtttcaa 51250602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 48 - 95
Target Start/End: Original strand, 51346484 - 51346531
Alignment:
Q  48 agcacactctcaagtctcaagtcaataccaccagaccaacccaagtgg 95  Q
    ||||||||||||| |||||||||||||||  ||| |||||||||||||    
T  51346484 agcacactctcaaatctcaagtcaataccgtcaggccaacccaagtgg 51346531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 102
Target Start/End: Original strand, 3350481 - 3350535
Alignment:
Q  48 agcacactctcaagtctcaagtcaataccaccagaccaacccaagtgggtttcaa 102  Q
    |||||| || ||| |||||||||||||||| ||||||||| ||||||| ||||||    
T  3350481 agcacattcccaaatctcaagtcaataccatcagaccaactcaagtggatttcaa 3350535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 41 - 99
Target Start/End: Complemental strand, 24827882 - 24827824
Alignment:
Q  41 gaggagaagcacactctcaagtctcaagtcaataccaccagaccaacccaagtgggttt 99  Q
    |||||| ||| ||||| || ||| ||||||||||||||| |||||||| ||||||||||    
T  24827882 gaggaggagcgcactcccaggtcccaagtcaataccaccggaccaaccaaagtgggttt 24827824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 98
Target Start/End: Original strand, 5795452 - 5795485
Alignment:
Q  65 caagtcaataccaccagaccaacccaagtgggtt 98  Q
    |||||||| |||||||||||||||||||||||||    
T  5795452 caagtcaacaccaccagaccaacccaagtgggtt 5795485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 96
Target Start/End: Original strand, 40284003 - 40284060
Alignment:
Q  39 ttgaggagaagcacactctcaagtctcaagtcaataccaccagaccaacccaagtggg 96  Q
    ||||||||| |||||||| |||||| |||| |||||||| ||  ||||||||||||||    
T  40284003 ttgaggagatgcacactcccaagtcccaagccaataccatcatgccaacccaagtggg 40284060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 98
Target Start/End: Complemental strand, 47044774 - 47044717
Alignment:
Q  41 gaggagaagcacactctcaagtctcaagtcaataccaccagaccaacccaagtgggtt 98  Q
    |||||| |||| |||||||  || ||||||||||||||||| |||| |||||||||||    
T  47044774 gaggaggagcaaactctcagatcccaagtcaataccaccaggccaatccaagtgggtt 47044717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 95
Target Start/End: Original strand, 52254424 - 52254477
Alignment:
Q  42 aggagaagcacactctcaagtctcaagtcaataccaccagaccaacccaagtgg 95  Q
    ||||| ||||||||||||  || ||||||||||||| ||||||||| |||||||    
T  52254424 aggaggagcacactctcatatcccaagtcaataccatcagaccaactcaagtgg 52254477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 318 - 346
Target Start/End: Complemental strand, 4104459 - 4104431
Alignment:
Q  318 tctagtgatgttgcttcaatgatcctcaa 346  Q
    |||||||||||||||||||||||||||||    
T  4104459 tctagtgatgttgcttcaatgatcctcaa 4104431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 233 - 281
Target Start/End: Complemental strand, 4104530 - 4104482
Alignment:
Q  233 agtttaaacattcaaaaatcgaaacactagtggtcgaacatttaaaaca 281  Q
    |||||||||||||||||||| |||||||||||   ||||||| ||||||    
T  4104530 agtttaaacattcaaaaatcaaaacactagtgactgaacattcaaaaca 4104482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 38 - 94
Target Start/End: Original strand, 4911248 - 4911304
Alignment:
Q  38 gttgaggagaagcacactctcaagtctcaagtcaataccaccagaccaacccaagtg 94  Q
    |||||| || |||||||||  ||||| ||||  ||||||||||||||||||||||||    
T  4911248 gttgagtaggagcacactcctaagtcccaagctaataccaccagaccaacccaagtg 4911304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 95
Target Start/End: Original strand, 7292815 - 7292871
Alignment:
Q  39 ttgaggagaagcacactctcaagtctcaagtcaataccaccagaccaacccaagtgg 95  Q
    |||||||| ||||||||| || ||  |||| ||||||||| ||||||||||||||||    
T  7292815 ttgaggaggagcacactcccaggttccaagccaataccactagaccaacccaagtgg 7292871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 50 - 98
Target Start/End: Complemental strand, 13496289 - 13496241
Alignment:
Q  50 cacactctcaagtctcaagtcaataccaccagaccaacccaagtgggtt 98  Q
    ||||||| || ||| ||||||||||||||||  ||||||||||||||||    
T  13496289 cacactcacatgtcccaagtcaataccaccatgccaacccaagtgggtt 13496241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 50 - 94
Target Start/End: Complemental strand, 13901790 - 13901746
Alignment:
Q  50 cacactctcaagtctcaagtcaataccaccagaccaacccaagtg 94  Q
    ||||||| || |||||||| ||||||||| |||||||||||||||    
T  13901790 cacactcccaggtctcaagccaataccactagaccaacccaagtg 13901746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 99
Target Start/End: Original strand, 37720231 - 37720291
Alignment:
Q  39 ttgaggagaagcacactctcaagtctcaagtcaataccaccagaccaacccaagtgggttt 99  Q
    ||||||||  |||||||| || ||| |||| ||||| |||||| |||||||||||||||||    
T  37720231 ttgaggaggggcacactcccaggtcccaagccaataacaccaggccaacccaagtgggttt 37720291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 91
Target Start/End: Original strand, 49576911 - 49576963
Alignment:
Q  39 ttgaggagaagcacactctcaagtctcaagtcaataccaccagaccaacccaa 91  Q
    |||||||| ||||||||| ||||||  ||| |||||||||||| |||||||||    
T  49576911 ttgaggaggagcacactcccaagtccaaagccaataccaccaggccaacccaa 49576963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 41 - 99
Target Start/End: Original strand, 35641920 - 35641978
Alignment:
Q  41 gaggagaagcacactctcaagtctcaagtcaataccaccagaccaacccaagtgggttt 99  Q
    |||||| ||||||||| ||| ||||||| | ||||||||||||||||||||||||||||    
T  35641920 gaggaggagcacactcccaaatctcaagccgataccaccagaccaacccaagtgggttt 35641978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 39 - 100
Target Start/End: Complemental strand, 28783119 - 28783058
Alignment:
Q  39 ttgaggagaagcacactctcaagtctcaagtcaataccaccagaccaacccaagtgggtttc 100  Q
    |||||||| ||||||||| || |||||||| |||||||||||  ||||||||||||||||||    
T  28783119 ttgaggaggagcacactcccaggtctcaagccaataccaccaagccaacccaagtgggtttc 28783058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 39 - 99
Target Start/End: Original strand, 19703504 - 19703564
Alignment:
Q  39 ttgaggagaagcacactctcaagtctcaagtcaataccaccagaccaacccaagtgggttt 99  Q
    |||||||| |||||||||||| ||| |||| ||||||||| || |||||||||||||||||    
T  19703504 ttgaggaggagcacactctcaggtcccaagccaataccactaggccaacccaagtgggttt 19703564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 193 - 281
Target Start/End: Original strand, 14979607 - 14979697
Alignment:
Q  193 tccatacatcaacttaattaaaacaatagataaagtatgt--agtttaaacattcaaaaatcgaaacactagtggtcgaacatttaaaaca 281  Q
    ||||||||||||||||| |||||||| ||||| |   |||  |||||||||||||||||| |||||||||||||   ||||||| ||||||    
T  14979607 tccatacatcaacttaactaaaacaaaagatatatagtgtcaagtttaaacattcaaaaaacgaaacactagtgactgaacattcaaaaca 14979697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 48 - 99
Target Start/End: Original strand, 17727452 - 17727503
Alignment:
Q  48 agcacactctcaagtctcaagtcaataccaccagaccaacccaagtgggttt 99  Q
    |||||||||| | |||||||||||| ||||| ||||||||||||||||||||    
T  17727452 agcacactctgaggtctcaagtcaacaccacgagaccaacccaagtgggttt 17727503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 39 - 101
Target Start/End: Original strand, 44780131 - 44780193
Alignment:
Q  39 ttgaggagaagcacactctcaagtctcaagtcaataccaccagaccaacccaagtgggtttca 101  Q
    |||||||| ||||||||| |||||| |||| |||| |||| || |||||||||||||||||||    
T  44780131 ttgaggaggagcacactcccaagtcccaagccaatgccactaggccaacccaagtgggtttca 44780193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 212 - 265
Target Start/End: Original strand, 20463690 - 20463743
Alignment:
Q  212 aaaacaatagataaagtatgtagtttaaacattcaaaaatcgaaacactagtgg 265  Q
    ||||||||||||||||||  | ||||||||||||||||| | ||||||||||||    
T  20463690 aaaacaatagataaagtacatggtttaaacattcaaaaaccaaaacactagtgg 20463743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 95
Target Start/End: Original strand, 25058670 - 25058714
Alignment:
Q  51 acactctcaagtctcaagtcaataccaccagaccaacccaagtgg 95  Q
    ||||||||| ||| |||||||||||||||||||||| ||||||||    
T  25058670 acactctcaggtcccaagtcaataccaccagaccaaaccaagtgg 25058714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 98
Target Start/End: Complemental strand, 29431067 - 29431011
Alignment:
Q  42 aggagaagcacactctcaagtctcaagtcaataccaccagaccaacccaagtgggtt 98  Q
    ||||| ||||||||| |||||| |||| ||||||| |||| ||||||||||||||||    
T  29431067 aggaggagcacactcccaagtcccaagccaataccgccaggccaacccaagtgggtt 29431011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 39 - 98
Target Start/End: Complemental strand, 18540357 - 18540298
Alignment:
Q  39 ttgaggagaagcacactctcaagtctcaagtcaataccaccagaccaacccaagtgggtt 98  Q
    ||||||||||| |||||| || ||| |||| ||||||||| || ||||||||||||||||    
T  18540357 ttgaggagaagtacactcccaggtcccaagccaataccactaggccaacccaagtgggtt 18540298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 43 - 98
Target Start/End: Original strand, 20994479 - 20994534
Alignment:
Q  43 ggagaagcacactctcaagtctcaagtcaataccaccagaccaacccaagtgggtt 98  Q
    |||| ||||||||| || ||| |||||||||||||| || ||||||||||||||||    
T  20994479 ggaggagcacactcccaggtcccaagtcaataccactaggccaacccaagtgggtt 20994534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 39 - 98
Target Start/End: Original strand, 23361666 - 23361725
Alignment:
Q  39 ttgaggagaagcacactctcaagtctcaagtcaataccaccagaccaacccaagtgggtt 98  Q
    |||||||| ||||||||| ||  || |||||||||||||||||  |||||||||||||||    
T  23361666 ttgaggaggagcacactcccatatcccaagtcaataccaccaggtcaacccaagtgggtt 23361725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 48 - 95
Target Start/End: Original strand, 34966876 - 34966923
Alignment:
Q  48 agcacactctcaagtctcaagtcaataccaccagaccaacccaagtgg 95  Q
    ||||||||| ||||||||||| |||||||| ||||||||| |||||||    
T  34966876 agcacactcccaagtctcaagccaataccatcagaccaactcaagtgg 34966923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 109 - 183
Target Start/End: Original strand, 39326008 - 39326083
Alignment:
Q  109 ttaataaagacttaaaatgtaaaaatatataactatacataagtaaatctcattcatataattcatt-aagagtaa 183  Q
    |||||||| |||||||||  | ||||||||||||| | |||   ||||||||||||||||||||||| ||||||||    
T  39326008 ttaataaatacttaaaatacataaatatataactaaaaatatccaaatctcattcatataattcattcaagagtaa 39326083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 41 - 99
Target Start/End: Complemental strand, 16852397 - 16852339
Alignment:
Q  41 gaggagaagcacactctcaagtctcaagtcaataccaccagaccaacccaagtgggttt 99  Q
    |||||| ||||||||| || ||| |||| ||||||||| || |||||||||||||||||    
T  16852397 gaggaggagcacactcccaggtcccaagccaataccactaggccaacccaagtgggttt 16852339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 98
Target Start/End: Complemental strand, 968419 - 968362
Alignment:
Q  41 gaggagaagcacactctcaagtctcaagtcaataccaccagaccaacccaagtgggtt 98  Q
    |||||| ||||||||| || ||| |||| |||||||||||| ||||| ||||||||||    
T  968419 gaggaggagcacactcccaggtcccaagccaataccaccaggccaactcaagtgggtt 968362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 96
Target Start/End: Complemental strand, 2203551 - 2203494
Alignment:
Q  39 ttgaggagaagcacactctcaagtctcaagtcaataccaccagaccaacccaagtggg 96  Q
    |||||||| ||||||||| || ||| |||| ||||||||| || ||||||||||||||    
T  2203551 ttgaggaggagcacactcccaggtcccaagccaataccactaggccaacccaagtggg 2203494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 43 - 99
Target Start/End: Original strand, 3826798 - 3826854
Alignment:
Q  43 ggagaagcacactctcaagtctcaagtcaataccaccagaccaacccaagtgggttt 99  Q
    |||| ||||||||||||| |  |||| ||||||||| || |||||||||||||||||    
T  3826798 ggaggagcacactctcaaatggcaagccaataccactaggccaacccaagtgggttt 3826854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 100
Target Start/End: Complemental strand, 8485049 - 8484997
Alignment:
Q  48 agcacactctcaagtctcaagtcaataccaccagaccaacccaagtgggtttc 100  Q
    ||||||||| || ||| ||||  ||||||||||| ||||||||||||||||||    
T  8485049 agcacactcacaggtcccaagcaaataccaccaggccaacccaagtgggtttc 8484997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 233 - 281
Target Start/End: Complemental strand, 15334311 - 15334263
Alignment:
Q  233 agtttaaacattcaaaaatcgaaacactagtggtcgaacatttaaaaca 281  Q
    |||||||||||||||||| |||||||||||||   ||||||| ||||||    
T  15334311 agtttaaacattcaaaaaacgaaacactagtgactgaacattcaaaaca 15334263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 233 - 281
Target Start/End: Complemental strand, 15423374 - 15423326
Alignment:
Q  233 agtttaaacattcaaaaatcgaaacactagtggtcgaacatttaaaaca 281  Q
    |||||||||||||||||| |||||||||||||   ||||||| ||||||    
T  15423374 agtttaaacattcaaaaaacgaaacactagtgactgaacattcaaaaca 15423326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 233 - 281
Target Start/End: Complemental strand, 15514680 - 15514632
Alignment:
Q  233 agtttaaacattcaaaaatcgaaacactagtggtcgaacatttaaaaca 281  Q
    |||||||||||||||||| |||||||||||||   ||||||| ||||||    
T  15514680 agtttaaacattcaaaaaacgaaacactagtgactgaacattcaaaaca 15514632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0258 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 41 - 98
Target Start/End: Original strand, 15342 - 15399
Alignment:
Q  41 gaggagaagcacactctcaagtctcaagtcaataccaccagaccaacccaagtgggtt 98  Q
    |||||| ||||||||| || ||| |||| |||||||||||||||||||||||||||||    
T  15342 gaggaggagcacactcccaggtcccaagccaataccaccagaccaacccaagtgggtt 15399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0517 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0517
Description:

Target: scaffold0517; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 42 - 98
Target Start/End: Original strand, 7746 - 7802
Alignment:
Q  42 aggagaagcacactctcaagtctcaagtcaataccaccagaccaacccaagtgggtt 98  Q
    ||||| |||||||| ||| |||||||| |||||||||||||||||||||||| ||||    
T  7746 aggaggagcacactttcaggtctcaagccaataccaccagaccaacccaagttggtt 7802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 212 - 265
Target Start/End: Original strand, 111861 - 111914
Alignment:
Q  212 aaaacaatagataaagtatgtagtttaaacattcaaaaatcgaaacactagtgg 265  Q
    ||||||||||||||||||  | ||||||||||||||||| | ||||||||||||    
T  111861 aaaacaatagataaagtacatggtttaaacattcaaaaaccaaaacactagtgg 111914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: scaffold0187
Description:

Target: scaffold0187; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 39 - 98
Target Start/End: Original strand, 12439 - 12498
Alignment:
Q  39 ttgaggagaagcacactctcaagtctcaagtcaataccaccagaccaacccaagtgggtt 98  Q
    |||||||| | |||||| ||| || |||||||||||||||||| ||||||||| ||||||    
T  12439 ttgaggaggatcacactttcaggtttcaagtcaataccaccaggccaacccaaatgggtt 12498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 39 - 98
Target Start/End: Original strand, 22767 - 22826
Alignment:
Q  39 ttgaggagaagcacactctcaagtctcaagtcaataccaccagaccaacccaagtgggtt 98  Q
    |||||||| | |||||| ||| || |||||||||||||||||| ||||||||| ||||||    
T  22767 ttgaggaggatcacactttcaggtttcaagtcaataccaccaggccaacccaaatgggtt 22826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 99
Target Start/End: Original strand, 41125 - 41178
Alignment:
Q  46 gaagcacactctcaagtctcaagtcaataccaccagaccaacccaagtgggttt 99  Q
    ||||||||||| |||||||||| | ||| ||| |||||||||||||||| ||||    
T  41125 gaagcacactcccaagtctcaaattaatgccatcagaccaacccaagtgagttt 41178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 98
Target Start/End: Original strand, 41652 - 41709
Alignment:
Q  41 gaggagaagcacactctcaagtctcaagtcaataccaccagaccaacccaagtgggtt 98  Q
    |||||| |||| |||||||  ||||||| ||||||||| || ||||||||||||||||    
T  41652 gaggaggagcatactctcagatctcaagccaataccactaggccaacccaagtgggtt 41709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0361 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 66 - 98
Target Start/End: Complemental strand, 5265 - 5233
Alignment:
Q  66 aagtcaataccaccagaccaacccaagtgggtt 98  Q
    ||||||||||||||||| |||||||||||||||    
T  5265 aagtcaataccaccagatcaacccaagtgggtt 5233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University