View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1830_low_7 (Length: 356)
Name: NF1830_low_7
Description: NF1830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1830_low_7 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 11 - 320
Target Start/End: Original strand, 47681107 - 47681416
Alignment:
| Q |
11 |
ataaaatgttatgtggggtaatgagataagtttgaccttgatgatgagggtcatattctattacagttgtgaatggactggacaacactcaaatagtgta |
110 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47681107 |
ataatatgttatgtggggtaatgagataagtttgaccttgatgatgagggtcatattctattacagttgtgaatggactggacaacactcaaatagtgta |
47681206 |
T |
|
| Q |
111 |
catgtgaacctttggaccccaatcccgatcctctatttcaattgaaaatgatatgtaataatttttgggatacttatcctatgtctctttgtggctacga |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47681207 |
catgtgaacctttggaccccaatcccgatcctctatttcaattgaaaatgatatgtaataatttttgggatacttatcctatgtctctttgtggctacga |
47681306 |
T |
|
| Q |
211 |
taccaatattttaggcaattattctctctactattctcattcttgtgttaacgtgcttttctccaattcccgttacgtaatctttgtctgttttgtttgt |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47681307 |
taccaatattttaggcaattattctctctactattctcaatcttgtgttaacgtgcttttctccaattcccgttacgtaatctttgtctgttttgtttgt |
47681406 |
T |
|
| Q |
311 |
tagtttcaaa |
320 |
Q |
| |
|
|||||||||| |
|
|
| T |
47681407 |
tagtttcaaa |
47681416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University