View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1830_low_8 (Length: 352)
Name: NF1830_low_8
Description: NF1830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1830_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 153; Significance: 5e-81; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 154 - 338
Target Start/End: Complemental strand, 22071424 - 22071239
Alignment:
| Q |
154 |
ctgacagaactttacataagtttgaagacaactaaaattagagagatacaagtacaagacttctataatgataaaacatacattgaagcatgggaatttt |
253 |
Q |
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| T |
22071424 |
ctgacagaactttacataagtttgaagacaactaaaattagagagatacaagtacaagacttctataatgataaaacatacattgaagcatgggaatttt |
22071325 |
T |
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| Q |
254 |
cgg-nnnnnnntgcattgttaggttattggcatgtatagccacatcaagctggccatagagtcaacctaattaaccaaaattgatt |
338 |
Q |
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| T |
22071324 |
cggaaaaaaaatgccttgttaggttattggcatgtatagccacatcaagctggccatagagtcaacctaattaaccaaaattgatt |
22071239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 6 - 122
Target Start/End: Complemental strand, 22071571 - 22071456
Alignment:
| Q |
6 |
aagcataggttcagctcgacttggcaacaaacttaaatatcataatcatatttagtaataattttatactcggagtaagaaagaataatctaataactat |
105 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22071571 |
aagcatagcttcagctcgacttggcaacaaacttaaatatcataatcatatttagtaataattttatactcggagtaagaaagaataatctaataactat |
22071472 |
T |
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| Q |
106 |
cattttacatcatatat |
122 |
Q |
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| T |
22071471 |
ca-tttacatcatatat |
22071456 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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