View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1830_low_9 (Length: 310)
Name: NF1830_low_9
Description: NF1830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1830_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 125; Significance: 2e-64; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 10 - 138
Target Start/End: Original strand, 27303785 - 27303913
Alignment:
| Q |
10 |
attatactacttgacaaattaaaaccaatattaacacatcattcttttgtgtaaattataacatcccattcctcatttccttcttatattctataattga |
109 |
Q |
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| T |
27303785 |
attatactacttgacaaattaaaaccaatattaacacatcattcttttgtgtaaattataacatctcattcctcatttccttcttatattctataattga |
27303884 |
T |
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| Q |
110 |
tatggcataatatatttacacatcctgaa |
138 |
Q |
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| T |
27303885 |
tatggcataatatatttacacatcctgaa |
27303913 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 191 - 271
Target Start/End: Original strand, 27303920 - 27304000
Alignment:
| Q |
191 |
aaattcagtagatcatcgaagaaaattagtcttcgtccaattaaaatatacaaaacttaaccatacacattcattatagat |
271 |
Q |
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| T |
27303920 |
aaattcagtagatcatcgaagaaaattagtcttcgtccaattaaaatatacaaaacttaaccatacacattcattatagat |
27304000 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 176 - 271
Target Start/End: Original strand, 27311214 - 27311313
Alignment:
| Q |
176 |
tatattaataaatcaaaattcagtagatcatcgaagaaaa----ttagtcttcgtccaattaaaatatacaaaacttaaccatacacattcattatagat |
271 |
Q |
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| T |
27311214 |
tatattcataaatcaaatttcagtgggttatcgaggaaaagatattagtcttcgtccggttaaaatatacaaagcttaaccatacaccttaatcatagat |
27311313 |
T |
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