View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18310_high_1 (Length: 470)
Name: NF18310_high_1
Description: NF18310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18310_high_1 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 426; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 1 - 470
Target Start/End: Original strand, 51992713 - 51993189
Alignment:
| Q |
1 |
aatatagtttcaaaggaatactctaaattaaatctaaagtaaaacaaaaacgaaagcatccgtgaatctggaaatatgaagatcataggtgtacagtgta |
100 |
Q |
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| T |
51992713 |
aatatagtttcaaaggaatactctaaattaaatctaaaataaaacaaaaacgaaagcatccgtgaatctggaaatatgaagatcataggtgtacagtgta |
51992812 |
T |
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| Q |
101 |
ctaccctgaaaagtaccatgtcagttctaaaataaatctcttcttacaatgtaataaatctaaaattcaacatgaaacatatctacca---atcaacgag |
197 |
Q |
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| T |
51992813 |
ctaccctgaaaagtaccatgtcagttctaaaataaatctcttcttacaatgtaataaatctaaaattcaacatgaaacatatctaccagcaatcaacaag |
51992912 |
T |
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| Q |
198 |
ggaaactattatgaaaaacaaaacattttacattttagaatccaaacttcagcagagtagaagacatacatg----actcaagaagagttctttctctat |
293 |
Q |
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| T |
51992913 |
ggaaactattataaaaaacaaaacattttacattttagaattcaaacttcagcagagtagaagacatacatgcatgactcaagaagagttctttctctat |
51993012 |
T |
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| Q |
294 |
gtcaatggaatgatagcaaggtggaacaaatgatggccgtgaaaatatcatcgagccaacaacactaggatgcactttatagcagcccctcaattttagt |
393 |
Q |
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| T |
51993013 |
gtcaatggaatgatagcaaggtggaacaaatgatggccgtgaaaatatcatcgagccaacaacactaggatgcactttatagcagcccctcaattttagt |
51993112 |
T |
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| Q |
394 |
cttttctcatagtttcatgtgcttcactcccttctatgtgaagactaacctaaatgtagacaaattattgctccaat |
470 |
Q |
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| T |
51993113 |
cttttctcatagtttcatgtgcttctctcccttctatgtgaagactaacctaaatgtagacaaattattgctccaat |
51993189 |
T |
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Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 325 - 385
Target Start/End: Complemental strand, 8187344 - 8187284
Alignment:
| Q |
325 |
gatggccgtgaaaatatcatcgagccaacaacactaggatgcactttatagcagcccctca |
385 |
Q |
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| T |
8187344 |
gatggccttgaaaatatcatcgagtcaacaacatcaggatgcacattatagcagcgcctca |
8187284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 322 - 373
Target Start/End: Complemental strand, 55505361 - 55505310
Alignment:
| Q |
322 |
aatgatggccgtgaaaatatcatcgagccaacaacactaggatgcactttat |
373 |
Q |
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| T |
55505361 |
aatgatggccttgaaaataccattgagtcaacaacactagtatgcactttat |
55505310 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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