View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18310_high_5 (Length: 334)
Name: NF18310_high_5
Description: NF18310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18310_high_5 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 9 - 334
Target Start/End: Original strand, 7724449 - 7724774
Alignment:
| Q |
9 |
gcaaatctgatggtccaaatccaatgccaatgtttagaatcactgttgtctctgaactgaacactgtggggttcagaaacagtaaaactgaaatgtcttt |
108 |
Q |
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| T |
7724449 |
gcaaatctgatggtccaaatccaatgccattgtttagaatcactgttgtctctgaactgaacactgtggggttcagaaacagtaaaactgaaatgtcttt |
7724548 |
T |
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| Q |
109 |
tttagaataccgagcgtagaatctaatcatccaatgaagttagtgttgcactatacctgcaaactcaggtcactttttcattgtaaaaacctaacatcat |
208 |
Q |
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| T |
7724549 |
tttagaataccgagcgtagaatctaatcatccaatgaagttagtgttgcactatacctgcaaactcaggtcactttttcattgtaaaaacctaacatcat |
7724648 |
T |
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| Q |
209 |
taccggtattatctttttagagtaccaactaccatgtagttaagcatcaaaattagcatgtcttacgtattaacaaaacaaaatcaacaaattgtgtaac |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7724649 |
taccggtattatctttttagagtaccaactaccatgtagttaagcatcaaaattagcatgtcttacgtattaacaaaacaaaatcaacaaattgtgtaac |
7724748 |
T |
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| Q |
309 |
tttttagagtagcacccctaaatcct |
334 |
Q |
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|||||||||||||||||||||||||| |
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| T |
7724749 |
tttttagagtagcacccctaaatcct |
7724774 |
T |
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