View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18311_high_6 (Length: 316)
Name: NF18311_high_6
Description: NF18311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18311_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 91 - 312
Target Start/End: Complemental strand, 31015880 - 31015659
Alignment:
| Q |
91 |
tattcaaactttcaaatatgttggtagcttcttctatttctaagtccacgcgccacggagagggaaaagtgcgagccacaagaatgtccacaaaaatggc |
190 |
Q |
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| T |
31015880 |
tattcaaactttgaaatatgttggtagcttcttctatttctaagtccaagcgccacggagagggaaaagtgcgagccacaagaatgtccacaaaaatggc |
31015781 |
T |
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| Q |
191 |
gattttgcagggtcttcggatctcaatttcggttccacaaactcttccaccactcctccaatcgcgcaaaacaaagacaagcaaaactccctcattccat |
290 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31015780 |
gattttgcagggtcttcggatctcaatttcgattccacaaactcttccaccactcctccaatcgcgcaaaacaaagacaagcaaaactccctcattccat |
31015681 |
T |
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| Q |
291 |
cattctcattttcttctctctc |
312 |
Q |
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||||||||||||||| |||||| |
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| T |
31015680 |
cattctcattttcttttctctc |
31015659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 92 - 312
Target Start/End: Complemental strand, 31194042 - 31193820
Alignment:
| Q |
92 |
attcaaactttcaaatatgtt-ggtagcttcttctatttctaagtccacgcgccacggagagggaaaagtgcgagcca----caagaatgtccacaaaaa |
186 |
Q |
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||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| ||||||| | ||||||| |||||||||| |
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| T |
31194042 |
attcaaactttcaaatatgttaggtagcttca---atttctaagtccacgcgccacggagagggaaaattgcgagcgagctacaagaatatccacaaaaa |
31193946 |
T |
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| Q |
187 |
tggcgattttgcagggtcttcggatctcaatttcggttccacaaactcttccaccactcctccaatcgcgcaaaacaaagacaagcaaaactccctcatt |
286 |
Q |
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||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |
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| T |
31193945 |
tggcgattttgcagggtcttcggatctcaatttcgctttcacaaactcttccaccactcctccaatcaggcaaaacaaagacaagcaaaacttcctcatt |
31193846 |
T |
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| Q |
287 |
ccatcattctcattttcttctctctc |
312 |
Q |
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|||||| |||||||| ||||||||| |
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| T |
31193845 |
ccatcaatctcatttctttctctctc |
31193820 |
T |
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