View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18311_low_2 (Length: 651)
Name: NF18311_low_2
Description: NF18311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18311_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 604; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 604; E-Value: 0
Query Start/End: Original strand, 19 - 634
Target Start/End: Original strand, 40809265 - 40809880
Alignment:
| Q |
19 |
cagaaccaatatacttcaaactcgaaagatcatacttatcaaccaaaccatgtttcgctagagcgagtacaatcggtggcacaatccataatctcgtaac |
118 |
Q |
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| T |
40809265 |
cagaaccaatatacttcaaactcgaaagatcatacttatcaaccaaaccatgtttcgctagagcgagtacaatcggtggcacaatccataatctcgtaac |
40809364 |
T |
|
| Q |
119 |
cctaaacttctcaatcgttttcaaaaccacttcaaactcaaaccgcttcaacgaaacaatcgcattccctctctgaagctgcgaatacgttatcaccgca |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40809365 |
cctaaacttctcaatcgttttcaaaaccacttcaaactcaaaccgcttcaacgaaacaatcgcattccctctctgaagctgcgaatacgttatcaccgca |
40809464 |
T |
|
| Q |
219 |
agtccaaacacatgaaacattggtagaacaacgagatacacatcgttgatttcaccgttcaattcatcatccattgaaatcattgcagcagaagcaatga |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40809465 |
agtccaaacacatgaaacattggtagaacaacgagatacacatcgttgatttcaccgttcaattcatcatccattgaaatcattgcagcagaagcaatga |
40809564 |
T |
|
| Q |
319 |
aattctggtgagttagaatcactcctttgcttacacctgtagtacccgaggaatacaacaacgccgccgtatcggtttgtttcacgtcaatttttggaaa |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40809565 |
aattctggtgagttagaatcactcctttgcttacacctgtagtacccgaggaatacaacaacgccgccgtatcggtttgtttcacgtcaatttttggaaa |
40809664 |
T |
|
| Q |
419 |
ttcggttgctgattcaccgagtttcacaaacgattcgaaactcgtaactgtatccggcgttgcaacgccggaggaattgagaaaaacggccgggatattg |
518 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
40809665 |
ttcggttgctgattcaccgagtttgacaaacgattcgaaactcgtaactgtatccggcgttgcaacgccggaggaattgagaaaaacggcggggatattg |
40809764 |
T |
|
| Q |
519 |
aggtgatttactttctgccataattcagcgacggtgataatgagtttcggatttgaatctttagcttgtttagaaacttcaacggtggtgtattgtggat |
618 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40809765 |
aggtgatttactttctcccataattcagcgacggtgataatgagtttcggatttgaatctttagcttgtttagaaacttcaacggtggtgtattgtggat |
40809864 |
T |
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| Q |
619 |
ttacggtggaagcgac |
634 |
Q |
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|||||||||||||||| |
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| T |
40809865 |
ttacggtggaagcgac |
40809880 |
T |
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