View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18311_low_3 (Length: 524)

Name: NF18311_low_3
Description: NF18311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18311_low_3
NF18311_low_3
[»] chr7 (7 HSPs)
chr7 (313-520)||(1288754-1288961)
chr7 (49-306)||(1288037-1288275)
chr7 (424-508)||(1288937-1289021)
chr7 (342-494)||(6897981-6898132)
chr7 (324-436)||(29477817-29477932)
chr7 (364-445)||(4579965-4580047)
chr7 (359-494)||(25831949-25832084)
[»] chr4 (9 HSPs)
chr4 (313-494)||(15020017-15020200)
chr4 (313-494)||(55081250-55081433)
chr4 (341-494)||(16595547-16595700)
chr4 (313-494)||(20513470-20513653)
chr4 (325-446)||(40684423-40684547)
chr4 (331-445)||(39991498-39991613)
chr4 (397-494)||(33722558-33722655)
chr4 (397-445)||(8536705-8536754)
chr4 (325-445)||(2574898-2575021)
[»] chr1 (9 HSPs)
chr1 (348-490)||(2493407-2493549)
chr1 (313-491)||(19309158-19309337)
chr1 (313-496)||(31064317-31064502)
chr1 (341-494)||(23191600-23191753)
chr1 (313-494)||(27761389-27761571)
chr1 (359-494)||(28857659-28857794)
chr1 (313-424)||(12906574-12906688)
chr1 (341-483)||(24159399-24159541)
chr1 (313-378)||(36725187-36725254)
[»] chr6 (9 HSPs)
chr6 (313-494)||(32814619-32814802)
chr6 (313-494)||(14042007-14042190)
chr6 (315-494)||(35129990-35130170)
chr6 (313-379)||(28969592-28969660)
chr6 (411-494)||(5496230-5496312)
chr6 (364-445)||(22610012-22610094)
chr6 (339-436)||(32551077-32551175)
chr6 (404-444)||(8748227-8748267)
chr6 (364-443)||(17914056-17914136)
[»] chr8 (9 HSPs)
chr8 (342-494)||(2470339-2470491)
chr8 (313-494)||(19950182-19950365)
chr8 (313-494)||(19954636-19954819)
chr8 (386-443)||(21416377-21416435)
chr8 (419-494)||(4543950-4544024)
chr8 (342-379)||(34517677-34517714)
chr8 (343-477)||(29793081-29793214)
chr8 (405-445)||(31449476-31449516)
chr8 (364-444)||(43302253-43302336)
[»] chr3 (5 HSPs)
chr3 (348-493)||(4662529-4662674)
chr3 (313-378)||(48435435-48435500)
chr3 (364-445)||(8888373-8888455)
chr3 (366-439)||(35456510-35456584)
chr3 (348-405)||(29067681-29067738)
[»] chr5 (7 HSPs)
chr5 (313-494)||(18265054-18265236)
chr5 (404-445)||(6155022-6155063)
chr5 (411-444)||(1429724-1429757)
chr5 (313-379)||(16747778-16747846)
chr5 (404-445)||(32461156-32461197)
chr5 (397-436)||(13290886-13290926)
chr5 (394-445)||(16639150-16639202)
[»] chr2 (3 HSPs)
chr2 (364-445)||(13291079-13291161)
chr2 (411-494)||(14104954-14105036)
chr2 (342-436)||(41558643-41558738)
[»] scaffold0018 (1 HSPs)
scaffold0018 (405-493)||(171358-171444)
[»] scaffold0555 (1 HSPs)
scaffold0555 (314-378)||(4756-4822)
[»] scaffold0009 (1 HSPs)
scaffold0009 (314-390)||(148757-148835)
[»] scaffold0182 (1 HSPs)
scaffold0182 (364-445)||(9450-9532)
[»] scaffold0226 (1 HSPs)
scaffold0226 (313-442)||(5811-5943)


Alignment Details
Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 313 - 520
Target Start/End: Original strand, 1288754 - 1288961
Alignment:
Q  313 gtgttgacaaactattcatttcttctccctttttatgtcccgtcgtatttaaagagtgttcttaagaacttaatcccttcgagatataatgtccttcaga 412  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  1288754 gtgttgacaaactattcatttcttctccctttttatatcccgtcgtatttaaagagtgttcttaagaacttagtcccttcgagatataatgtccttcaga 1288853  T
Q  413 attaataatggtcttaagagcataatcccttcggcaaaactttgtccctttaaaaataagagtatttttaaaatcatagtccttcttaagagcatagtcc 512  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1288854 attaataatggtcttaagagcataatcccttcagcaaaactttgtccctttaaaaataagagtatttttaaaatcatagtccttcttaagagcatagtcc 1288953  T
Q  513 ctttgcta 520  Q
    ||| ||||    
T  1288954 cttcgcta 1288961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 180; E-Value: 6e-97
Query Start/End: Original strand, 49 - 306
Target Start/End: Original strand, 1288037 - 1288275
Alignment:
Q  49 atttatatatcgtttggaattcattccaactaatcaattattctgggagccagttgatgatgcaaccctattaacatcgttatggagggttatccttata 148  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1288037 atttatatatcgtttggaattcattccaactaatcaatgattctgggagccagttgatgatgcaaccctattaacatcgttatggagggttatccttata 1288136  T
Q  149 cgtggtggaggagaaaatgggcagatagagaagttgagcagagattggatagaacgacggtcatggacagatggctctgttcgaacaccaagtgtgtttg 248  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                   ||| ||||||||||||||||||    
T  1288137 cgtggtggaggagaaaatgggcagatagagaagttgagcagagattggatagaacgacg-------------------gttggaacaccaagtgtgtttg 1288217  T
Q  249 tgtgaattgaaaaattactatgtcccatatcaggtagattatacacacaatattagtg 306  Q
    ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||    
T  1288218 tgtgaattgaaaaattattatgtcccatatccggtagattatacacacaatattagtg 1288275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 424 - 508
Target Start/End: Original strand, 1288937 - 1289021
Alignment:
Q  424 tcttaagagcataatcccttcggcaaaactttgtccctttaaaaataagagtatttttaaaatcatagtccttcttaagagcata 508  Q
    ||||||||||||| ||||||||  |||||||||||||||  |||||||||||||||||||||| | |||||||||||||||||||    
T  1288937 tcttaagagcatagtcccttcgctaaaactttgtcccttcgaaaataagagtatttttaaaattagagtccttcttaagagcata 1289021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 342 - 494
Target Start/End: Original strand, 6897981 - 6898132
Alignment:
Q  342 tttttatgtcccgtcgtatttaaagagtgttcttaagaacttaatcccttcgagatataatgtc-cttcagaattaataatggtcttaagagcataatcc 440  Q
    ||||| |||||| ||| ||||||||||||||||||||  | || ||||||||   || |||||| |||| ||||||| ||||||||||||| |||| |||    
T  6897981 tttttctgtcccttcgaatttaaagagtgttcttaaggtcatagtcccttcggttta-aatgtctcttcggaattaagaatggtcttaagaacatagtcc 6898079  T
Q  441 cttcggcaaaactttgtccctttaaaaataagagtatttttaaaatcatagtcc 494  Q
    |||||| |||| || || |||| | ||||||||||||| |||| ||||||||||    
T  6898080 cttcggtaaaa-ttcgttccttcataaataagagtattcttaagatcatagtcc 6898132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 324 - 436
Target Start/End: Original strand, 29477817 - 29477932
Alignment:
Q  324 ctattcatttcttctccct--ttttatgtcccgtcgtatttaaagagtgttcttaagaacttaatcccttcgagatataatgt-ccttcagaattaataa 420  Q
    |||||| ||||||||||||  |||| |||||| ||| ||||||||||||||||||||  | ||||||||||    |||||| | ||||| ||||||| ||    
T  29477817 ctattcttttcttctccctccttttctgtcccttcggatttaaagagtgttcttaaggtcataatcccttcagtttataatatcccttcggaattaagaa 29477916  T
Q  421 tggtcttaagagcata 436  Q
    ||||||||||| ||||    
T  29477917 tggtcttaagaacata 29477932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 364 - 445
Target Start/End: Complemental strand, 4580047 - 4579965
Alignment:
Q  364 aagagtgttcttaagaacttaatcccttcgagatataatgtcctt-cagaattaataatggtcttaagagcataatcccttcg 445  Q
    |||||||||||||||| | |||||||||   | ||||||||| || ||||||||| |||||| ||||||||||| ||||||||    
T  4580047 aagagtgttcttaagaccataatcccttttcggtataatgtcatttcagaattaagaatggttttaagagcatagtcccttcg 4579965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 359 - 494
Target Start/End: Original strand, 25831949 - 25832084
Alignment:
Q  359 atttaaagagtgttcttaagaacttaatcccttcgagatataatgt-ccttcagaattaataatggtcttaagagcataatcccttcggcaaaactttgt 457  Q
    |||||||||||||||||| || | ||  || || |||| ||||||| ||||  ||||||| ||||||||||| | |||| || |||| | |||  |||||    
T  25831949 atttaaagagtgttcttatgaccatagcccatttgagaaataatgttcctttggaattaagaatggtcttaaaaacatagtcacttcagtaaat-tttgt 25832047  T
Q  458 ccctttaaaaataagagtatttttaaaatcatagtcc 494  Q
    |||||  |||||||||||||| |||| ||||||||||    
T  25832048 cccttcgaaaataagagtattcttaagatcatagtcc 25832084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 78; Significance: 4e-36; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 313 - 494
Target Start/End: Original strand, 15020017 - 15020200
Alignment:
Q  313 gtgttgacaaactattcatttcttctccct--ttttatgtcccgtcgtatttaaagagtgttcttaagaacttaatcccttcgagatataatgtcc-ttc 409  Q
    |||||||||| |||||| |||||||| |||  |||| |||||||||| |||| |||| ||||||||||| | || |||||| |||||||||||||| |||    
T  15020017 gtgttgacaagctattcttttcttcttcctctttttctgtcccgtcggatttcaagaatgttcttaagaccatagtccctttgagatataatgtccattc 15020116  T
Q  410 agaattaataatggtcttaagagcataatcccttcggcaaaactttgtccctttaaaaataagagtatttttaaaatcatagtcc 494  Q
    | ||||||  ||||||||||||||||| |||||||||  ||| |||||||||||  |||||||||||||||||| ||||||||||    
T  15020117 aaaattaaggatggtcttaagagcatagtcccttcgg-taaattttgtccctttggaaataagagtatttttaagatcatagtcc 15020200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 313 - 494
Target Start/End: Original strand, 55081250 - 55081433
Alignment:
Q  313 gtgttgacaaactattcatttcttctccct--ttttatgtcccgtcgtatttaaagagtgttcttaagaacttaatcccttcgagatataatgtc-cttc 409  Q
    |||||||| | |||||| |||| |||||||  |||| |||||| ||| ||||||||||||||||||||  | || ||||||||   ||||| ||| ||||    
T  55081250 gtgttgacgagctattcttttcctctccctctttttctgtcccttcgaatttaaagagtgttcttaaggccatagtcccttcggtttataacgtctcttc 55081349  T
Q  410 agaattaataatggtcttaagagcataatcccttcggcaaaactttgtccctttaaaaataagagtatttttaaaatcatagtcc 494  Q
    |||||||| ||||||||||||| |||| ||||||||| |||| || ||||||| | ||||||||||||| |||| ||||||||||    
T  55081350 agaattaagaatggtcttaagaacatagtcccttcgggaaaa-ttcgtcccttcagaaataagagtattcttaagatcatagtcc 55081433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 341 - 494
Target Start/End: Original strand, 16595547 - 16595700
Alignment:
Q  341 ctttttatgtcccgtcgtatttaaagagtgttcttaagaacttaatcccttcgagatataatgtcc-ttcagaattaataatggtcttaagagcataatc 439  Q
    |||||| |||||| ||| ||||||||||||||||||||  | || ||  || |   || ||||||| ||||||||||| ||||||||||||| |||| ||    
T  16595547 ctttttttgtcccttcgaatttaaagagtgttcttaaggccatagtctatttggtttaaaatgtcccttcagaattaagaatggtcttaagaacatagtc 16595646  T
Q  440 ccttcggcaaaactttgtccctttaaaaataagagtatttttaaaatcatagtcc 494  Q
    |||| || |||| |||||||||| | |||||||||||||||||| ||||||||||    
T  16595647 ccttaggtaaaa-tttgtcccttcagaaataagagtatttttaagatcatagtcc 16595700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 313 - 494
Target Start/End: Complemental strand, 20513653 - 20513470
Alignment:
Q  313 gtgttgacaaactattcatttcttctccct--ttttatgtcccgtcgtatttaaagagtgttcttaagaacttaatcccttcgagatataatgtcc-ttc 409  Q
    |||||||| | |||||| ||||||||||||  |||| |||||  ||| ||||||||| || |||||| ||| |||||||||||   || ||||||| |||    
T  20513653 gtgttgacgagctattcttttcttctccctctttttctgtcctttcggatttaaagaatggtcttaaaaacataatcccttcggtttaaaatgtcccttc 20513554  T
Q  410 agaattaataatggtcttaagagcataatcccttcggcaaaactttgtccctttaaaaataagagtatttttaaaatcatagtcc 494  Q
      |||||| |||||| |||||| |||| ||||||||| |||| || ||| ||| | ||||||||||||| |||| ||||||||||    
T  20513553 gaaattaagaatggttttaagaacatagtcccttcggtaaaa-ttcgtctcttcagaaataagagtattcttaagatcatagtcc 20513470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 325 - 446
Target Start/End: Original strand, 40684423 - 40684547
Alignment:
Q  325 tattcatttcttctccct--ttttatgtcccgtcgtatttaaagagtgttcttaagaacttaatcccttcgagatataatgt-ccttcagaattaataat 421  Q
    ||||| ||||||||||||  |||| |||||| ||| ||||||||||||||||||||  | || ||| ||||   |||||||| |||| |||||||| |||    
T  40684423 tattcttttcttctccctgtttttctgtcccttcggatttaaagagtgttcttaaggtcatagtccattcggtttataatgtccctttagaattaagaat 40684522  T
Q  422 ggtcttaagagcataatcccttcgg 446  Q
    |||||||||| |||| ||| |||||    
T  40684523 ggtcttaagaacatagtccattcgg 40684547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 331 - 445
Target Start/End: Original strand, 39991498 - 39991613
Alignment:
Q  331 tttcttctccctttttatgtcccgtcgtatttaaagagtgttcttaagaacttaatcccttcgagatataatgt-ccttcagaattaataatggtcttaa 429  Q
    ||||| |||||||||||| | || ||| |||||||||||||| |||||| |  | ||| |||| |||||||| | |||||  || ||| |||||||||||    
T  39991498 tttctcctccctttttatcttccatcggatttaaagagtgtttttaagaccacagtccattcgtgatataatctcccttcgaaagtaagaatggtcttaa 39991597  T
Q  430 gagcataatcccttcg 445  Q
    ||||||| || |||||    
T  39991598 gagcatagtctcttcg 39991613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 397 - 494
Target Start/End: Original strand, 33722558 - 33722655
Alignment:
Q  397 tataatgtcc-ttcagaattaataatggtcttaagagcataatcccttcggcaaaactttgtccctttaaaaataagagtatttttaaaatcatagtcc 494  Q
    |||||||||| ||| ||||||| ||||||||||||| |||| ||| |||||  ||| |||||| |||  |||||||||||||| |||| |||| |||||    
T  33722558 tataatgtcccttcggaattaagaatggtcttaagaacatagtccattcgg-taaattttgtcgcttcgaaaataagagtattcttaagatcaaagtcc 33722655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 397 - 445
Target Start/End: Complemental strand, 8536754 - 8536705
Alignment:
Q  397 tataatgtcc-ttcagaattaataatggtcttaagagcataatcccttcg 445  Q
    |||||||||| ||||||||||| |||||| |||||||||||||| |||||    
T  8536754 tataatgtccattcagaattaagaatggttttaagagcataatctcttcg 8536705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 325 - 445
Target Start/End: Original strand, 2574898 - 2575021
Alignment:
Q  325 tattcatttcttctccct--ttttatgtcccgtcgtatttaaagagtgttcttaagaacttaatcccttcgagatataatgtcc-ttcagaattaataat 421  Q
    ||||| ||||||||||||  |||| | |||||||| ||| | ||| |||||||||||   ||||| |||  ||| | ||||||| |||| || ||| |||    
T  2574898 tattcttttcttctccctctttttctatcccgtcggattcagagaatgttcttaagactataatctctttaagaaacaatgtcccttcaaaactaagaat 2574997  T
Q  422 ggtcttaagagcataatcccttcg 445  Q
    ||||||||||||||| ||||||||    
T  2574998 ggtcttaagagcatagtcccttcg 2575021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 2e-25; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 348 - 490
Target Start/End: Original strand, 2493407 - 2493549
Alignment:
Q  348 tgtcccgtcgtatttaaagagtgttcttaagaacttaatcccttcgagatataatgtcc-ttcagaattaataatggtcttaagagcataatcccttcgg 446  Q
    |||||||| | ||||||||| |||| |||||| | || ||||||||||| ||||||||| ||| ||||||| |||||||||||||||||| |||||||||    
T  2493407 tgtcccgtaggatttaaagaatgtttttaagaccatagtcccttcgagaaataatgtcccttcggaattaagaatggtcttaagagcatagtcccttcgg 2493506  T
Q  447 caaaactttgtccctttaaaaataagagtatttttaaaatcata 490  Q
      ||| ||||||||||  |||||||||||||| |||| ||||||    
T  2493507 -taaattttgtcccttcgaaaataagagtattcttaagatcata 2493549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 313 - 491
Target Start/End: Original strand, 19309158 - 19309337
Alignment:
Q  313 gtgttgacaaactattcatttcttctccct--ttttatgtcccgtcgtatttaaagagtgttcttaagaacttaatcccttcgagatataatgtcc-ttc 409  Q
    |||||||| | |||||| ||||||||||||  |||| || ||| ||| ||||||||||||||||||||  | || || |||||   |||||||||| |||    
T  19309158 gtgttgacgagctattcttttcttctccctctttttctgacccttcggatttaaagagtgttcttaaggtcatagtctcttcggtttataatgtcccttc 19309257  T
Q  410 agaattaataatggtcttaagagcataatcccttcggcaaaactttgtccctttaaaaataagagtatttttaaaatcatag 491  Q
     ||||||||||||||||||||| |||| ||||||| | |||  ||| ||| ||| |||||||||||||| |||| |||||||    
T  19309258 ggaattaataatggtcttaagaacatagtcccttcagtaaa--tttttccattttaaaataagagtattattaagatcatag 19309337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 313 - 496
Target Start/End: Complemental strand, 31064502 - 31064317
Alignment:
Q  313 gtgttgacaaactattcatttcttctccct--ttttatgtcccgtcgtatttaaagagtgttcttaagaacttaatcccttcgagatataatgt-ccttc 409  Q
    |||||||| |||||||| ||| ||||||||  ||||||||||| ||| ||||||||||||||||||||| | || || ||| |   || ||||| |||||    
T  31064502 gtgttgacgaactattcttttattctccctctttttatgtcccttcggatttaaagagtgttcttaagatcatagtctctttggtttaaaatgtcccttc 31064403  T
Q  410 agaattaataatggtcttaagagcataatcccttcggcaaaactttgtccctttaaaaataagagtatttttaaaatcatagtcctt 496  Q
     ||||| | ||||||||||||| |||| ||||||||| |||| || |||||||   |||||||| |||| |||| ||||||||||||    
T  31064402 ggaattgagaatggtcttaagaacatagtcccttcggtaaaa-ttagtcccttctgaaataagactattcttaagatcatagtcctt 31064317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 341 - 494
Target Start/End: Original strand, 23191600 - 23191753
Alignment:
Q  341 ctttttatgtcccgtcgtatttaaagagtgttcttaagaacttaatcccttcgagatataatgtcc-ttcagaattaataatggtcttaagagcataatc 439  Q
    |||||| |||| ||||| ||||||||||| || |||||| | |  ||||||| ||| ||||||||| ||| ||||||| ||| |||| || | |||| ||    
T  23191600 ctttttctgtctcgtcggatttaaagagtttttttaagaccatggtcccttcaagaaataatgtcccttcggaattaagaatagtctcaatatcatagtc 23191699  T
Q  440 ccttcggcaaaactttgtccctttaaaaataagagtatttttaaaatcatagtcc 494  Q
     |||||| |||  |||||||||||||||||||||||||| |||| ||||||||||    
T  23191700 tcttcggtaaat-tttgtccctttaaaaataagagtattcttaagatcatagtcc 23191753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 313 - 494
Target Start/End: Original strand, 27761389 - 27761571
Alignment:
Q  313 gtgttgacaaactattcatttcttctccct--ttttatgtcccgtcgtatttaaagagtgttcttaagaacttaatcccttcgagatataatgt-ccttc 409  Q
    |||||||| | |||||| |||| |||||||  |||| |||||| ||| ||||||||||||||||||||  | || |||||| |   || ||||| |||||    
T  27761389 gtgttgacgagctattcttttcctctccctctttttctgtcccttcgaatttaaagagtgttcttaaggccatagtccctttggtttaaaatgtcccttc 27761488  T
Q  410 agaattaataatggtcttaagagcataatcccttcggcaaaactttgtccctttaaaaataagagtatttttaaaatcatagtcc 494  Q
    |||| ||| |||||||||||||  ||| ||||||||| |||| || ||||||| |||||||||||| || |||| ||||||||||    
T  27761489 agaa-taagaatggtcttaagaaaatagtcccttcggtaaaa-ttcgtcccttcaaaaataagagtgttcttaagatcatagtcc 27761571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 359 - 494
Target Start/End: Original strand, 28857659 - 28857794
Alignment:
Q  359 atttaaagagtgttcttaagaacttaatcccttcgagatataatgtcc-ttcagaattaataatggtcttaagagcataatcccttcggcaaaactttgt 457  Q
    |||||| |||||||||| ||  |||| ||| ||||   || ||||||| ||||||||||| ||||||||||||| |||| ||||||||| |||| || ||    
T  28857659 atttaatgagtgttcttcaggtcttagtcctttcggtttaaaatgtccattcagaattaagaatggtcttaagaacatagtcccttcggtaaaa-ttcgt 28857757  T
Q  458 ccctttaaaaataagagtatttttaaaatcatagtcc 494  Q
    ||||| | ||||||||||||| |||| ||||||||||    
T  28857758 cccttcagaaataagagtattcttaagatcatagtcc 28857794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 313 - 424
Target Start/End: Complemental strand, 12906688 - 12906574
Alignment:
Q  313 gtgttgacaaactattcatttcttctccct--ttttatgtcccgtcgtatttaaagagtgttcttaagaacttaatcccttcgagatataatgt-ccttc 409  Q
    |||||||| | |||||| ||||||||||||  |||| |||||| ||| ||||||||||||||||||||  | || ||||||||   |||||||| |||||    
T  12906688 gtgttgacgagctattcttttcttctccctctttttctgtcccttcggatttaaagagtgttcttaaggccatagtcccttcggtttataatgtcccttc 12906589  T
Q  410 agaattaataatggt 424  Q
     ||||||| ||||||    
T  12906588 ggaattaagaatggt 12906574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 341 - 483
Target Start/End: Original strand, 24159399 - 24159541
Alignment:
Q  341 ctttttatgtcccgtcgtatttaaagagtgttcttaagaacttaatcccttcgagatataatgt-ccttcagaattaataatggtcttaagagcataatc 439  Q
    |||||| |||||| ||  |||||||| |||||||||||  | || ||||||||   || ||||| ||||| ||||||| || |||||||||| |||| ||    
T  24159399 ctttttctgtcccttcagatttaaagggtgttcttaaggccatagtcccttcggtttaaaatgtcccttcggaattaagaacggtcttaagaacatagtc 24159498  T
Q  440 ccttcggcaaaactttgtccctttaaaaataagagtatttttaa 483  Q
    ||||||| |||| || ||||||| | ||||||||||||| ||||    
T  24159499 ccttcggtaaaa-ttcgtcccttcagaaataagagtattcttaa 24159541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 313 - 378
Target Start/End: Complemental strand, 36725254 - 36725187
Alignment:
Q  313 gtgttgacaaactattcatttcttctccct--ttttatgtcccgtcgtatttaaagagtgttcttaag 378  Q
    |||||||| | |||||| ||||||||||||  |||| |||||| ||| ||||||||||||||||||||    
T  36725254 gtgttgacgagctattcttttcttctccctctttttctgtcccttcggatttaaagagtgttcttaag 36725187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 4e-24; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 313 - 494
Target Start/End: Original strand, 32814619 - 32814802
Alignment:
Q  313 gtgttgacaaactattcatttcttctccct--ttttatgtcccgtcgtatttaaagagtgttcttaagaacttaatcccttcgagatataatgt-ccttc 409  Q
    |||||||| | |||||| |||| |||||||  ||||||||||||||  ||||||||||||||||||||| | || ||||||| ||| ||||| | |||||    
T  32814619 gtgttgacgagctattcttttcctctccctctttttatgtcccgtcaaatttaaagagtgttcttaagaccatagtcccttcaagaaataatttcccttc 32814718  T
Q  410 agaattaataatggtcttaagagcataatcccttcggcaaaactttgtccctttaaaaataagagtatttttaaaatcatagtcc 494  Q
    |||||||| ||| |||| |||||| || |||||||||  ||| ||||||||||  ||||||||  |||| |||| ||||||||||    
T  32814719 agaattaagaatagtctcaagagcttagtcccttcgg-taaattttgtcccttcgaaaataagtttattcttaatatcatagtcc 32814802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 313 - 494
Target Start/End: Complemental strand, 14042190 - 14042007
Alignment:
Q  313 gtgttgacaaactattcatttcttctccct--ttttatgtcccgtcgtatttaaagagtgttcttaagaacttaatcccttcgagatataatgtcc-ttc 409  Q
    |||||||| | |||||| ||||||||||||  |||| |||||| ||| |||||||| ||||||| |||  | || ||||||||   |||||||||| |||    
T  14042190 gtgttgacgagctattcttttcttctccctctttttctgtcccttcggatttaaagtgtgttctaaaggccatagtcccttcggtttataatgtcccttc 14042091  T
Q  410 agaattaataatggtcttaagagcataatcccttcggcaaaactttgtccctttaaaaataagagtatttttaaaatcatagtcc 494  Q
      |||||| ||||||||||||| |||| | ||||||| |||  ||||||||||  |||||||||||||| |||| |||| |||||    
T  14042090 gaaattaagaatggtcttaagaacatagttccttcggtaaat-tttgtcccttcgaaaataagagtattcttaagatcaaagtcc 14042007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 315 - 494
Target Start/End: Complemental strand, 35130170 - 35129990
Alignment:
Q  315 gttgacaaactattcatttcttctccct--ttttatgtcccgtcgtatttaaagagtgttcttaagaacttaatcccttcgagatataatgtcc-ttcag 411  Q
    |||||||| |||||| |||| |||||||  |||| |||||| ||| ||||||||| ||||||||||  | || ||||||||   |||||||||| ||| |    
T  35130170 gttgacaatctattcttttcctctccctctttttctgtcccttcggatttaaagaatgttcttaaggtcatagtcccttcggtttataatgtccattcgg 35130071  T
Q  412 aattaataatggtcttaagagcataatcccttcggcaaaactttgtccctttaaaaataagagtatttttaaaatcatagtcc 494  Q
    |||||| ||||||||||||| |||| || ||||||  ||| ||||| ||||  |||||||||||||| |||| |||| |||||    
T  35130070 aattaagaatggtcttaagaacatagtctcttcgg-taaattttgt-ccttcgaaaataagagtattcttaagatcaaagtcc 35129990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 313 - 379
Target Start/End: Original strand, 28969592 - 28969660
Alignment:
Q  313 gtgttgacaaactattcatttcttctcccttttt--atgtcccgtcgtatttaaagagtgttcttaaga 379  Q
    |||||||| | |||||| |||||||||||| |||  ||||||||||| |||| ||||||||||||||||    
T  28969592 gtgttgacgagctattcttttcttctccctcttttcatgtcccgtcggattttaagagtgttcttaaga 28969660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 411 - 494
Target Start/End: Complemental strand, 5496312 - 5496230
Alignment:
Q  411 gaattaataatggtcttaagagcataatcccttcggcaaaactttgtccctttaaaaataagagtatttttaaaatcatagtcc 494  Q
    ||||||| |||||||||||||||||| | |||||||  ||| ||| ||||||  ||||| |||||||| |||| ||||||||||    
T  5496312 gaattaaaaatggtcttaagagcatagttccttcgg-taaattttatcccttcgaaaattagagtattattaagatcatagtcc 5496230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 364 - 445
Target Start/End: Complemental strand, 22610094 - 22610012
Alignment:
Q  364 aagagtgttcttaagaacttaatcccttcgagatataatgtc-cttcagaattaataatggtcttaagagcataatcccttcg 445  Q
    |||||||||||||||| | |||||||||   | ||||||||| |||| ||||||| |||||| ||||||||||| || |||||    
T  22610094 aagagtgttcttaagaccataatcccttttcggtataatgtcacttcggaattaagaatggttttaagagcatagtctcttcg 22610012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 339 - 436
Target Start/End: Original strand, 32551077 - 32551175
Alignment:
Q  339 ccctttttatgtcccgtcgtatttaaagagtgttcttaagaacttaatcccttcgagatataatgtcc-ttcagaattaataatggtcttaagagcata 436  Q
    |||||||||| || ||||  ||||| |||||||||||||||   || | |||||||| ||||||||||  ||| |||||||||| ||||||||| ||||    
T  32551077 ccctttttatttctcgtcagatttatagagtgttcttaagactatagttccttcgagttataatgtccgatcaaaattaataatagtcttaagaacata 32551175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 404 - 444
Target Start/End: Complemental strand, 8748267 - 8748227
Alignment:
Q  404 tccttcagaattaataatggtcttaagagcataatcccttc 444  Q
    ||||||| ||| ||||||||||||||||||||| |||||||    
T  8748267 tccttcacaatcaataatggtcttaagagcatagtcccttc 8748227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 364 - 443
Target Start/End: Complemental strand, 17914136 - 17914056
Alignment:
Q  364 aagagtgttcttaagaacttaatcccttcgagatataatgtcc-ttcagaattaataatggtcttaagagcataatccctt 443  Q
    |||||||||||||||| | || ||| ||   |||||||||||| ||| ||||||| |||||||||||| ||||| ||||||    
T  17914136 aagagtgttcttaagaccatagtccattttcgatataatgtcccttcggaattaagaatggtcttaagtgcatagtccctt 17914056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 9e-22; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 342 - 494
Target Start/End: Complemental strand, 2470491 - 2470339
Alignment:
Q  342 tttttatgtcccgtcgtatttaaagagtgttcttaagaacttaatcccttcgagatataatgt-ccttcagaattaataatggtcttaagagcataatcc 440  Q
    ||||| |||||| ||| ||||||||||||||||||||  | || |||||||    || ||||| ||||| ||||||| ||||||||||||| ||||  ||    
T  2470491 tttttctgtcccttcggatttaaagagtgttcttaaggtcatagtcccttcagtttaaaatgtcccttctgaattaagaatggtcttaagaacatagccc 2470392  T
Q  441 cttcggcaaaactttgtccctttaaaaataagagtatttttaaaatcatagtcc 494  Q
    |||||| |||| || ||||||| |||||||||||||||||||| ||||||||||    
T  2470391 cttcggtaaaa-ttcgtcccttcaaaaataagagtatttttaagatcatagtcc 2470339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 313 - 494
Target Start/End: Complemental strand, 19950365 - 19950182
Alignment:
Q  313 gtgttgacaaactattcatttcttctccctttttat--gtcccgtcgtatttaaagagtgttcttaagaacttaatcccttcgagatataatgtcc-ttc 409  Q
    |||||||| | |||||| |||| ||||||| ||| |  ||||| ||| ||||||||||||||||||||  | || ||||||||   || ||||||| |||    
T  19950365 gtgttgacgagctattcttttcctctccctctttttccgtcccttcggatttaaagagtgttcttaaggtcatagtcccttcggtttaaaatgtccattc 19950266  T
Q  410 agaattaataatggtcttaagagcataatcccttcggcaaaactttgtccctttaaaaataagagtatttttaaaatcatagtcc 494  Q
     |||| || ||||||||||||| |||| ||||||||| |||| |||||||| | | ||||||||||||| |||| ||||||||||    
T  19950265 ggaataaagaatggtcttaagaacatagtcccttcggtaaaa-tttgtcccatcagaaataagagtattcttaagatcatagtcc 19950182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 313 - 494
Target Start/End: Complemental strand, 19954819 - 19954636
Alignment:
Q  313 gtgttgacaaactattcatttcttctccct--ttttatgtcccgtcgtatttaaagagtgttcttaagaacttaatcccttcgagatataatgt-ccttc 409  Q
    |||||||| | |||||| |||| |||||||  |||| | |||| ||| ||||||||||||||||||||  | || || |||||   || ||||| |||||    
T  19954819 gtgttgacgagctattcttttcctctccctctttttctctcccttcggatttaaagagtgttcttaaggccatagtctcttcggtttaaaatgtcccttc 19954720  T
Q  410 agaattaataatggtcttaagagcataatcccttcggcaaaactttgtccctttaaaaataagagtatttttaaaatcatagtcc 494  Q
     |||| || ||||||||||||| |||| ||||||||| |||| |||||||||| | ||||||||||||| |||| | ||||||||    
T  19954719 ggaataaagaatggtcttaagaacatagtcccttcggtaaaa-tttgtcccttcagaaataagagtattcttaagagcatagtcc 19954636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 386 - 443
Target Start/End: Original strand, 21416377 - 21416435
Alignment:
Q  386 tcccttcgagatataatgtcc-ttcagaattaataatggtcttaagagcataatccctt 443  Q
    ||||||||||| ||||||||| || |||||||| ||||||||||| |||||||||||||    
T  21416377 tcccttcgagaaataatgtcccttgagaattaagaatggtcttaatagcataatccctt 21416435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 419 - 494
Target Start/End: Original strand, 4543950 - 4544024
Alignment:
Q  419 aatggtcttaagagcataatcccttcggcaaaactttgtccctttaaaaataagagtatttttaaaatcatagtcc 494  Q
    ||||||||||||| |||| ||||||||| |||| || ||||||| | |||||| |||||| |||| ||||||||||    
T  4543950 aatggtcttaagaacatagtcccttcggtaaaa-ttcgtcccttcagaaataaaagtattcttaagatcatagtcc 4544024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 342 - 379
Target Start/End: Complemental strand, 34517714 - 34517677
Alignment:
Q  342 tttttatgtcccgtcgtatttaaagagtgttcttaaga 379  Q
    |||||||||||||||| |||||||||||||| ||||||    
T  34517714 tttttatgtcccgtcggatttaaagagtgtttttaaga 34517677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 343 - 477
Target Start/End: Complemental strand, 29793214 - 29793081
Alignment:
Q  343 ttttatgtcccgtcgtatttaaagagtgttcttaagaacttaatcccttcgagatataatg-tccttcagaattaataatggtcttaagagcataatccc 441  Q
    |||| |||||| ||| |||||| ||| |  ||||||| | |||||||||||| |||||||| | ||||  |||||| |||| |||||||||| ||||| |    
T  29793214 ttttttgtcccttcgaatttaatgagcgaccttaagaccataatcccttcgaaatataatgtttcttcgaaattaagaatgatcttaagagcttaatctc 29793115  T
Q  442 ttcggcaaaactttgtccctttaaaaataagagtat 477  Q
    || |  | || |||||||||| |||| |||||||||    
T  29793114 tttg--ataattttgtcccttcaaaattaagagtat 29793081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 405 - 445
Target Start/End: Original strand, 31449476 - 31449516
Alignment:
Q  405 ccttcagaattaataatggtcttaagagcataatcccttcg 445  Q
    ||||| ||||||| |||||||||||||||||| ||||||||    
T  31449476 ccttcggaattaagaatggtcttaagagcatagtcccttcg 31449516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 364 - 444
Target Start/End: Original strand, 43302253 - 43302336
Alignment:
Q  364 aagagtgttcttaagaactta--atcccttcgagatataatgtcc-ttcagaattaataatggtcttaagagcataatcccttc 444  Q
    |||||||||||||||| | ||  |||||||   |||||| ||||| ||| |||| ||||||||||||||||||||| |||||||    
T  43302253 aagagtgttcttaagaccatataatcccttgtcgatatattgtccattcggaatcaataatggtcttaagagcatagtcccttc 43302336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 5e-20; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 348 - 493
Target Start/End: Complemental strand, 4662674 - 4662529
Alignment:
Q  348 tgtcccgtcgtatttaaagagtgttcttaagaacttaatcccttcgagatataatgtcc-ttcagaattaataatggtcttaagagcataatcccttcgg 446  Q
    |||||| ||| ||||||||||||||||||||  | || ||||||||   || ||||||| ||| ||||||| ||||||||||||| |||| ||||||||     
T  4662674 tgtcccttcggatttaaagagtgttcttaaggccatagtcccttcggtttaaaatgtcccttcggaattaagaatggtcttaagaacatagtcccttcga 4662575  T
Q  447 caaaactttgtccctttaaaaataagagtatttttaaaatcatagtc 493  Q
     |||| || ||||||| ||||||||||||||| |||| |||||||||    
T  4662574 taaaa-ttcgtcccttaaaaaataagagtattcttaagatcatagtc 4662529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 313 - 378
Target Start/End: Original strand, 48435435 - 48435500
Alignment:
Q  313 gtgttgacaaactattcatttcttctccctttttatgtcccgtcgtatttaaagagtgttcttaag 378  Q
    |||||||||| |||||| |||| |||| ||||||||||||| ||  ||||||||||||||||||||    
T  48435435 gtgttgacaagctattcttttcctctctctttttatgtcccttcagatttaaagagtgttcttaag 48435500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 364 - 445
Target Start/End: Complemental strand, 8888455 - 8888373
Alignment:
Q  364 aagagtgttcttaagaacttaatcccttcgagatataatgtcc-ttcagaattaataatggtcttaagagcataatcccttcg 445  Q
    |||||||||||||||| | || ||||||   | | |||||||| ||| ||||||| |||||||||||||||||| ||||||||    
T  8888455 aagagtgttcttaagaccatagtcccttttcggtttaatgtcccttcggaattaagaatggtcttaagagcatagtcccttcg 8888373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 366 - 439
Target Start/End: Original strand, 35456510 - 35456584
Alignment:
Q  366 gagtgttcttaagaacttaatcccttcgagatataatgtcc-ttcagaattaataatggtcttaagagcataatc 439  Q
    |||||||||||||| |||||| |||    | |||||||||| ||| ||||||| |||||||||||||||||||||    
T  35456510 gagtgttcttaagaccttaattcctattcggtataatgtcccttcggaattaagaatggtcttaagagcataatc 35456584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 405
Target Start/End: Original strand, 29067681 - 29067738
Alignment:
Q  348 tgtcccgtcgtatttaaagagtgttcttaagaacttaatcccttcgagatataatgtc 405  Q
    |||||||||| |||||||||||||| |||||| | || || ||||||| |||||||||    
T  29067681 tgtcccgtcgaatttaaagagtgtttttaagatcatagtcacttcgagttataatgtc 29067738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 313 - 494
Target Start/End: Original strand, 18265054 - 18265236
Alignment:
Q  313 gtgttgacaaactattcatttcttctccct--ttttatgtcccgtcgtatttaaagagtgttcttaagaacttaatcccttcgagatataatg-tccttc 409  Q
    |||||||| | |||||| |||| |||||||  |||| |||||| ||| ||||||||||||||||||||  | || ||||||||   || |||| ||||||    
T  18265054 gtgttgacgagctattcttttcctctccctctttttctgtcccttcggatttaaagagtgttcttaaggccctagtcccttcggtttaaaatgttccttc 18265153  T
Q  410 agaattaataatggtcttaagagcataatcccttcggcaaaactttgtccctttaaaaataagagtatttttaaaatcatagtcc 494  Q
     ||| ||| ||||||||||||| |||| ||||||||| |||| || ||||||| | ||||||||||||| |||| ||||||||||    
T  18265154 -gaaataagaatggtcttaagaacatagtcccttcggtaaaa-ttcgtcccttcagaaataagagtattcttaagatcatagtcc 18265236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 404 - 445
Target Start/End: Original strand, 6155022 - 6155063
Alignment:
Q  404 tccttcagaattaataatggtcttaagagcataatcccttcg 445  Q
    ||||||||||| ||||||||||||||||||||| ||||||||    
T  6155022 tccttcagaatcaataatggtcttaagagcatagtcccttcg 6155063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 411 - 444
Target Start/End: Original strand, 1429724 - 1429757
Alignment:
Q  411 gaattaataatggtcttaagagcataatcccttc 444  Q
    |||||||||||||||||||||||||| |||||||    
T  1429724 gaattaataatggtcttaagagcatagtcccttc 1429757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 379
Target Start/End: Original strand, 16747778 - 16747846
Alignment:
Q  313 gtgttgacaaactattcatttcttctccc--tttttatgtcccgtcgtatttaaagagtgttcttaaga 379  Q
    |||||||| | ||||||||||||||||||  ||||||||| || ||| ||||||| | |||||||||||    
T  16747778 gtgttgacgagctattcatttcttctccctttttttatgttccatcggatttaaaaaatgttcttaaga 16747846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 404 - 445
Target Start/End: Original strand, 32461156 - 32461197
Alignment:
Q  404 tccttcagaattaataatggtcttaagagcataatcccttcg 445  Q
    |||||| |||| ||||||||||||||||||||| ||||||||    
T  32461156 tccttcggaatcaataatggtcttaagagcatagtcccttcg 32461197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 397 - 436
Target Start/End: Original strand, 13290886 - 13290926
Alignment:
Q  397 tataatgtcctt-cagaattaataatggtcttaagagcata 436  Q
    |||||||||||| ||||||||| ||||||||||||||||||    
T  13290886 tataatgtcctttcagaattaaaaatggtcttaagagcata 13290926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 394 - 445
Target Start/End: Original strand, 16639150 - 16639202
Alignment:
Q  394 agatataatgtcc-ttcagaattaataatggtcttaagagcataatcccttcg 445  Q
    ||||||||||||| || |||||||| |||| ||||||||||||| ||||||||    
T  16639150 agatataatgtccctttagaattaaaaatgatcttaagagcatagtcccttcg 16639202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 364 - 445
Target Start/End: Original strand, 13291079 - 13291161
Alignment:
Q  364 aagagtgttcttaagaacttaatcccttcgagatataatgtcc-ttcagaattaataatggtcttaagagcataatcccttcg 445  Q
    |||||||||||||||| | ||  |||||| ||||||||||||| ||| ||||| | |||||||||||||| ||||||||||||    
T  13291079 aagagtgttcttaagatcatagacccttctagatataatgtcccttcggaattgacaatggtcttaagagtataatcccttcg 13291161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 411 - 494
Target Start/End: Complemental strand, 14105036 - 14104954
Alignment:
Q  411 gaattaataatggtcttaagagcataatcccttcggcaaaactttgtccctttaaaaataagagtatttttaaaatcatagtcc 494  Q
    ||||||| ||||||||||||| |||| |||||||||  ||| || ||||||| | ||||||||||||| |||| ||||||||||    
T  14105036 gaattaagaatggtcttaagaacatagtcccttcgg-taaatttcgtcccttcagaaataagagtattcttaagatcatagtcc 14104954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 342 - 436
Target Start/End: Original strand, 41558643 - 41558738
Alignment:
Q  342 tttttatgtcccgtcgtatttaaagagtgttcttaagaacttaatcccttcgagatataatgt-ccttcagaattaataatggtcttaagagcata 436  Q
    ||||| |||||||||| ||||||||||||||| || || | || |||||| |||| |||| || |||||| |||||| |||| |||||||||||||    
T  41558643 tttttttgtcccgtcggatttaaagagtgttcatatgaccatagtccctttgagaaataacgtcccttcaaaattaaaaatgttcttaagagcata 41558738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 405 - 493
Target Start/End: Original strand, 171358 - 171444
Alignment:
Q  405 ccttcagaattaataatggtcttaagagcataatcccttcggcaaaactttgtccctttaaaaataagagtatttttaaaatcatagtc 493  Q
    ||||| ||||||| ||||||||||||| | || ||||||||  |||  |||||||||| | |||||||||||||||||| |||||||||    
T  171358 ccttcggaattaagaatggtcttaagaacgtagtcccttcgataaa--tttgtcccttcagaaataagagtatttttaagatcatagtc 171444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0555 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0555
Description:

Target: scaffold0555; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 378
Target Start/End: Complemental strand, 4822 - 4756
Alignment:
Q  314 tgttgacaaactattcatttcttctccct--ttttatgtcccgtcgtatttaaagagtgttcttaag 378  Q
    ||||||| | |||||| ||||||||||||  |||| |||||| ||| ||||||||||||||||||||    
T  4822 tgttgacgagctattcttttcttctccctctttttttgtcccttcggatttaaagagtgttcttaag 4756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 390
Target Start/End: Original strand, 148757 - 148835
Alignment:
Q  314 tgttgacaaactattcatttcttctccct--ttttatgtcccgtcgtatttaaagagtgttcttaagaacttaatccct 390  Q
    |||||||||||||||| |||| ||| |||  |||| |||||||||| | || |||||||||||||||| | ||||||||    
T  148757 tgttgacaaactattcttttcctctacctctttttctgtcccgtcggactttaagagtgttcttaagaccataatccct 148835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 364 - 445
Target Start/End: Original strand, 9450 - 9532
Alignment:
Q  364 aagagtgttcttaagaacttaatcccttcgagatataatgtcc-ttcagaattaataatggtcttaagagcataatcccttcg 445  Q
    |||||||||||||||| | || ||||||   | | |||||||| ||| ||||||| |||||||||||||||||| ||||||||    
T  9450 aagagtgttcttaagaccatagtcccttttcggtttaatgtccattcggaattaagaatggtcttaagagcatagtcccttcg 9532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0226 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0226
Description:

Target: scaffold0226; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 442
Target Start/End: Original strand, 5811 - 5943
Alignment:
Q  313 gtgttgacaaactattcatttcttctccctttttat--gtcccgtcgtatttaaagagtgttcttaagaacttaatcccttcgagatataatgtcc-ttc 409  Q
    |||||||| | |||||| ||| |||||||| ||| |  ||||| ||| |||||||||||||| |||||  | || ||||||||   |||||||||| |||    
T  5811 gtgttgacgagctattctttttttctccctcttttttagtcccttcggatttaaagagtgtttttaaggccatagtcccttcggtttataatgtcccttc 5910  T
Q  410 agaattaataatggtcttaagagcataatccct 442  Q
      |||||| ||||||||||||| |||| |||||    
T  5911 gaaattaagaatggtcttaagaacatagtccct 5943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University