View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18311_low_5 (Length: 396)

Name: NF18311_low_5
Description: NF18311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18311_low_5
NF18311_low_5
[»] chr7 (7 HSPs)
chr7 (185-392)||(1288754-1288961)
chr7 (18-178)||(1288134-1288275)
chr7 (296-380)||(1288937-1289021)
chr7 (214-366)||(6897981-6898132)
chr7 (196-308)||(29477817-29477932)
chr7 (236-317)||(4579965-4580047)
chr7 (231-366)||(25831949-25832084)
[»] chr4 (9 HSPs)
chr4 (185-366)||(15020017-15020200)
chr4 (185-366)||(55081250-55081433)
chr4 (213-366)||(16595547-16595700)
chr4 (185-366)||(20513470-20513653)
chr4 (197-318)||(40684423-40684547)
chr4 (203-317)||(39991498-39991613)
chr4 (269-366)||(33722558-33722655)
chr4 (269-317)||(8536705-8536754)
chr4 (197-317)||(2574898-2575021)
[»] chr1 (9 HSPs)
chr1 (220-362)||(2493407-2493549)
chr1 (185-363)||(19309158-19309337)
chr1 (185-368)||(31064317-31064502)
chr1 (213-366)||(23191600-23191753)
chr1 (185-366)||(27761389-27761571)
chr1 (231-366)||(28857659-28857794)
chr1 (185-296)||(12906574-12906688)
chr1 (213-355)||(24159399-24159541)
chr1 (185-250)||(36725187-36725254)
[»] chr6 (9 HSPs)
chr6 (185-366)||(32814619-32814802)
chr6 (185-366)||(14042007-14042190)
chr6 (187-366)||(35129990-35130170)
chr6 (185-251)||(28969592-28969660)
chr6 (283-366)||(5496230-5496312)
chr6 (236-317)||(22610012-22610094)
chr6 (211-308)||(32551077-32551175)
chr6 (276-316)||(8748227-8748267)
chr6 (236-315)||(17914056-17914136)
[»] chr8 (9 HSPs)
chr8 (214-366)||(2470339-2470491)
chr8 (185-366)||(19950182-19950365)
chr8 (185-366)||(19954636-19954819)
chr8 (258-315)||(21416377-21416435)
chr8 (291-366)||(4543950-4544024)
chr8 (214-251)||(34517677-34517714)
chr8 (215-349)||(29793081-29793214)
chr8 (277-317)||(31449476-31449516)
chr8 (236-316)||(43302253-43302336)
[»] chr3 (5 HSPs)
chr3 (220-365)||(4662529-4662674)
chr3 (185-250)||(48435435-48435500)
chr3 (236-317)||(8888373-8888455)
chr3 (238-311)||(35456510-35456584)
chr3 (220-277)||(29067681-29067738)
[»] chr5 (7 HSPs)
chr5 (185-366)||(18265054-18265236)
chr5 (276-317)||(6155022-6155063)
chr5 (283-316)||(1429724-1429757)
chr5 (185-251)||(16747778-16747846)
chr5 (276-317)||(32461156-32461197)
chr5 (269-308)||(13290886-13290926)
chr5 (266-317)||(16639150-16639202)
[»] chr2 (3 HSPs)
chr2 (236-317)||(13291079-13291161)
chr2 (283-366)||(14104954-14105036)
chr2 (214-308)||(41558643-41558738)
[»] scaffold0018 (1 HSPs)
scaffold0018 (277-365)||(171358-171444)
[»] scaffold0555 (1 HSPs)
scaffold0555 (186-250)||(4756-4822)
[»] scaffold0009 (1 HSPs)
scaffold0009 (186-262)||(148757-148835)
[»] scaffold0182 (1 HSPs)
scaffold0182 (236-317)||(9450-9532)
[»] scaffold0226 (1 HSPs)
scaffold0226 (185-314)||(5811-5943)


Alignment Details
Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 185 - 392
Target Start/End: Original strand, 1288754 - 1288961
Alignment:
Q  185 gtgttgacaaactattcatttcttctccctttttatgtcccgtcgtatttaaagagtgttcttaagaacttaatcccttcgagatataatgtccttcaga 284  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  1288754 gtgttgacaaactattcatttcttctccctttttatatcccgtcgtatttaaagagtgttcttaagaacttagtcccttcgagatataatgtccttcaga 1288853  T
Q  285 attaataatggtcttaagagcataatcccttcggcaaaactttgtccctttaaaaataagagtatttttaaaatcatagtccttcttaagagcatagtcc 384  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1288854 attaataatggtcttaagagcataatcccttcagcaaaactttgtccctttaaaaataagagtatttttaaaatcatagtccttcttaagagcatagtcc 1288953  T
Q  385 ctttgcta 392  Q
    ||| ||||    
T  1288954 cttcgcta 1288961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 18 - 178
Target Start/End: Original strand, 1288134 - 1288275
Alignment:
Q  18 atacgtggtggaggagaaaatgggcagatagagaagttgagcagagattggatagaacgacggtcatggacagatggctctgttcgaacaccaagtgtgt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                   | |||||||||||||||    
T  1288134 atacgtggtggaggagaaaatgggcagatagagaagttgagcagagattggatagaacgacggt-------------------tggaacaccaagtgtgt 1288214  T
Q  118 ttgtgtgaattgaaaaattactatgtcccatatcaggtagattatacacacaatattagtg 178  Q
    |||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||    
T  1288215 ttgtgtgaattgaaaaattattatgtcccatatccggtagattatacacacaatattagtg 1288275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 296 - 380
Target Start/End: Original strand, 1288937 - 1289021
Alignment:
Q  296 tcttaagagcataatcccttcggcaaaactttgtccctttaaaaataagagtatttttaaaatcatagtccttcttaagagcata 380  Q
    ||||||||||||| ||||||||  |||||||||||||||  |||||||||||||||||||||| | |||||||||||||||||||    
T  1288937 tcttaagagcatagtcccttcgctaaaactttgtcccttcgaaaataagagtatttttaaaattagagtccttcttaagagcata 1289021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 214 - 366
Target Start/End: Original strand, 6897981 - 6898132
Alignment:
Q  214 tttttatgtcccgtcgtatttaaagagtgttcttaagaacttaatcccttcgagatataatgtc-cttcagaattaataatggtcttaagagcataatcc 312  Q
    ||||| |||||| ||| ||||||||||||||||||||  | || ||||||||   || |||||| |||| ||||||| ||||||||||||| |||| |||    
T  6897981 tttttctgtcccttcgaatttaaagagtgttcttaaggtcatagtcccttcggttta-aatgtctcttcggaattaagaatggtcttaagaacatagtcc 6898079  T
Q  313 cttcggcaaaactttgtccctttaaaaataagagtatttttaaaatcatagtcc 366  Q
    |||||| |||| || || |||| | ||||||||||||| |||| ||||||||||    
T  6898080 cttcggtaaaa-ttcgttccttcataaataagagtattcttaagatcatagtcc 6898132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 196 - 308
Target Start/End: Original strand, 29477817 - 29477932
Alignment:
Q  196 ctattcatttcttctccct--ttttatgtcccgtcgtatttaaagagtgttcttaagaacttaatcccttcgagatataatgt-ccttcagaattaataa 292  Q
    |||||| ||||||||||||  |||| |||||| ||| ||||||||||||||||||||  | ||||||||||    |||||| | ||||| ||||||| ||    
T  29477817 ctattcttttcttctccctccttttctgtcccttcggatttaaagagtgttcttaaggtcataatcccttcagtttataatatcccttcggaattaagaa 29477916  T
Q  293 tggtcttaagagcata 308  Q
    ||||||||||| ||||    
T  29477917 tggtcttaagaacata 29477932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 236 - 317
Target Start/End: Complemental strand, 4580047 - 4579965
Alignment:
Q  236 aagagtgttcttaagaacttaatcccttcgagatataatgtcctt-cagaattaataatggtcttaagagcataatcccttcg 317  Q
    |||||||||||||||| | |||||||||   | ||||||||| || ||||||||| |||||| ||||||||||| ||||||||    
T  4580047 aagagtgttcttaagaccataatcccttttcggtataatgtcatttcagaattaagaatggttttaagagcatagtcccttcg 4579965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 366
Target Start/End: Original strand, 25831949 - 25832084
Alignment:
Q  231 atttaaagagtgttcttaagaacttaatcccttcgagatataatgt-ccttcagaattaataatggtcttaagagcataatcccttcggcaaaactttgt 329  Q
    |||||||||||||||||| || | ||  || || |||| ||||||| ||||  ||||||| ||||||||||| | |||| || |||| | |||  |||||    
T  25831949 atttaaagagtgttcttatgaccatagcccatttgagaaataatgttcctttggaattaagaatggtcttaaaaacatagtcacttcagtaaat-tttgt 25832047  T
Q  330 ccctttaaaaataagagtatttttaaaatcatagtcc 366  Q
    |||||  |||||||||||||| |||| ||||||||||    
T  25832048 cccttcgaaaataagagtattcttaagatcatagtcc 25832084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 78; Significance: 3e-36; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 185 - 366
Target Start/End: Original strand, 15020017 - 15020200
Alignment:
Q  185 gtgttgacaaactattcatttcttctccct--ttttatgtcccgtcgtatttaaagagtgttcttaagaacttaatcccttcgagatataatgtcc-ttc 281  Q
    |||||||||| |||||| |||||||| |||  |||| |||||||||| |||| |||| ||||||||||| | || |||||| |||||||||||||| |||    
T  15020017 gtgttgacaagctattcttttcttcttcctctttttctgtcccgtcggatttcaagaatgttcttaagaccatagtccctttgagatataatgtccattc 15020116  T
Q  282 agaattaataatggtcttaagagcataatcccttcggcaaaactttgtccctttaaaaataagagtatttttaaaatcatagtcc 366  Q
    | ||||||  ||||||||||||||||| |||||||||  ||| |||||||||||  |||||||||||||||||| ||||||||||    
T  15020117 aaaattaaggatggtcttaagagcatagtcccttcgg-taaattttgtccctttggaaataagagtatttttaagatcatagtcc 15020200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 185 - 366
Target Start/End: Original strand, 55081250 - 55081433
Alignment:
Q  185 gtgttgacaaactattcatttcttctccct--ttttatgtcccgtcgtatttaaagagtgttcttaagaacttaatcccttcgagatataatgtc-cttc 281  Q
    |||||||| | |||||| |||| |||||||  |||| |||||| ||| ||||||||||||||||||||  | || ||||||||   ||||| ||| ||||    
T  55081250 gtgttgacgagctattcttttcctctccctctttttctgtcccttcgaatttaaagagtgttcttaaggccatagtcccttcggtttataacgtctcttc 55081349  T
Q  282 agaattaataatggtcttaagagcataatcccttcggcaaaactttgtccctttaaaaataagagtatttttaaaatcatagtcc 366  Q
    |||||||| ||||||||||||| |||| ||||||||| |||| || ||||||| | ||||||||||||| |||| ||||||||||    
T  55081350 agaattaagaatggtcttaagaacatagtcccttcgggaaaa-ttcgtcccttcagaaataagagtattcttaagatcatagtcc 55081433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 213 - 366
Target Start/End: Original strand, 16595547 - 16595700
Alignment:
Q  213 ctttttatgtcccgtcgtatttaaagagtgttcttaagaacttaatcccttcgagatataatgtcc-ttcagaattaataatggtcttaagagcataatc 311  Q
    |||||| |||||| ||| ||||||||||||||||||||  | || ||  || |   || ||||||| ||||||||||| ||||||||||||| |||| ||    
T  16595547 ctttttttgtcccttcgaatttaaagagtgttcttaaggccatagtctatttggtttaaaatgtcccttcagaattaagaatggtcttaagaacatagtc 16595646  T
Q  312 ccttcggcaaaactttgtccctttaaaaataagagtatttttaaaatcatagtcc 366  Q
    |||| || |||| |||||||||| | |||||||||||||||||| ||||||||||    
T  16595647 ccttaggtaaaa-tttgtcccttcagaaataagagtatttttaagatcatagtcc 16595700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 185 - 366
Target Start/End: Complemental strand, 20513653 - 20513470
Alignment:
Q  185 gtgttgacaaactattcatttcttctccct--ttttatgtcccgtcgtatttaaagagtgttcttaagaacttaatcccttcgagatataatgtcc-ttc 281  Q
    |||||||| | |||||| ||||||||||||  |||| |||||  ||| ||||||||| || |||||| ||| |||||||||||   || ||||||| |||    
T  20513653 gtgttgacgagctattcttttcttctccctctttttctgtcctttcggatttaaagaatggtcttaaaaacataatcccttcggtttaaaatgtcccttc 20513554  T
Q  282 agaattaataatggtcttaagagcataatcccttcggcaaaactttgtccctttaaaaataagagtatttttaaaatcatagtcc 366  Q
      |||||| |||||| |||||| |||| ||||||||| |||| || ||| ||| | ||||||||||||| |||| ||||||||||    
T  20513553 gaaattaagaatggttttaagaacatagtcccttcggtaaaa-ttcgtctcttcagaaataagagtattcttaagatcatagtcc 20513470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 197 - 318
Target Start/End: Original strand, 40684423 - 40684547
Alignment:
Q  197 tattcatttcttctccct--ttttatgtcccgtcgtatttaaagagtgttcttaagaacttaatcccttcgagatataatgt-ccttcagaattaataat 293  Q
    ||||| ||||||||||||  |||| |||||| ||| ||||||||||||||||||||  | || ||| ||||   |||||||| |||| |||||||| |||    
T  40684423 tattcttttcttctccctgtttttctgtcccttcggatttaaagagtgttcttaaggtcatagtccattcggtttataatgtccctttagaattaagaat 40684522  T
Q  294 ggtcttaagagcataatcccttcgg 318  Q
    |||||||||| |||| ||| |||||    
T  40684523 ggtcttaagaacatagtccattcgg 40684547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 203 - 317
Target Start/End: Original strand, 39991498 - 39991613
Alignment:
Q  203 tttcttctccctttttatgtcccgtcgtatttaaagagtgttcttaagaacttaatcccttcgagatataatgt-ccttcagaattaataatggtcttaa 301  Q
    ||||| |||||||||||| | || ||| |||||||||||||| |||||| |  | ||| |||| |||||||| | |||||  || ||| |||||||||||    
T  39991498 tttctcctccctttttatcttccatcggatttaaagagtgtttttaagaccacagtccattcgtgatataatctcccttcgaaagtaagaatggtcttaa 39991597  T
Q  302 gagcataatcccttcg 317  Q
    ||||||| || |||||    
T  39991598 gagcatagtctcttcg 39991613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 269 - 366
Target Start/End: Original strand, 33722558 - 33722655
Alignment:
Q  269 tataatgtcc-ttcagaattaataatggtcttaagagcataatcccttcggcaaaactttgtccctttaaaaataagagtatttttaaaatcatagtcc 366  Q
    |||||||||| ||| ||||||| ||||||||||||| |||| ||| |||||  ||| |||||| |||  |||||||||||||| |||| |||| |||||    
T  33722558 tataatgtcccttcggaattaagaatggtcttaagaacatagtccattcgg-taaattttgtcgcttcgaaaataagagtattcttaagatcaaagtcc 33722655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 317
Target Start/End: Complemental strand, 8536754 - 8536705
Alignment:
Q  269 tataatgtcc-ttcagaattaataatggtcttaagagcataatcccttcg 317  Q
    |||||||||| ||||||||||| |||||| |||||||||||||| |||||    
T  8536754 tataatgtccattcagaattaagaatggttttaagagcataatctcttcg 8536705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 197 - 317
Target Start/End: Original strand, 2574898 - 2575021
Alignment:
Q  197 tattcatttcttctccct--ttttatgtcccgtcgtatttaaagagtgttcttaagaacttaatcccttcgagatataatgtcc-ttcagaattaataat 293  Q
    ||||| ||||||||||||  |||| | |||||||| ||| | ||| |||||||||||   ||||| |||  ||| | ||||||| |||| || ||| |||    
T  2574898 tattcttttcttctccctctttttctatcccgtcggattcagagaatgttcttaagactataatctctttaagaaacaatgtcccttcaaaactaagaat 2574997  T
Q  294 ggtcttaagagcataatcccttcg 317  Q
    ||||||||||||||| ||||||||    
T  2574998 ggtcttaagagcatagtcccttcg 2575021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 2e-25; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 220 - 362
Target Start/End: Original strand, 2493407 - 2493549
Alignment:
Q  220 tgtcccgtcgtatttaaagagtgttcttaagaacttaatcccttcgagatataatgtcc-ttcagaattaataatggtcttaagagcataatcccttcgg 318  Q
    |||||||| | ||||||||| |||| |||||| | || ||||||||||| ||||||||| ||| ||||||| |||||||||||||||||| |||||||||    
T  2493407 tgtcccgtaggatttaaagaatgtttttaagaccatagtcccttcgagaaataatgtcccttcggaattaagaatggtcttaagagcatagtcccttcgg 2493506  T
Q  319 caaaactttgtccctttaaaaataagagtatttttaaaatcata 362  Q
      ||| ||||||||||  |||||||||||||| |||| ||||||    
T  2493507 -taaattttgtcccttcgaaaataagagtattcttaagatcata 2493549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 185 - 363
Target Start/End: Original strand, 19309158 - 19309337
Alignment:
Q  185 gtgttgacaaactattcatttcttctccct--ttttatgtcccgtcgtatttaaagagtgttcttaagaacttaatcccttcgagatataatgtcc-ttc 281  Q
    |||||||| | |||||| ||||||||||||  |||| || ||| ||| ||||||||||||||||||||  | || || |||||   |||||||||| |||    
T  19309158 gtgttgacgagctattcttttcttctccctctttttctgacccttcggatttaaagagtgttcttaaggtcatagtctcttcggtttataatgtcccttc 19309257  T
Q  282 agaattaataatggtcttaagagcataatcccttcggcaaaactttgtccctttaaaaataagagtatttttaaaatcatag 363  Q
     ||||||||||||||||||||| |||| ||||||| | |||  ||| ||| ||| |||||||||||||| |||| |||||||    
T  19309258 ggaattaataatggtcttaagaacatagtcccttcagtaaa--tttttccattttaaaataagagtattattaagatcatag 19309337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 185 - 368
Target Start/End: Complemental strand, 31064502 - 31064317
Alignment:
Q  185 gtgttgacaaactattcatttcttctccct--ttttatgtcccgtcgtatttaaagagtgttcttaagaacttaatcccttcgagatataatgt-ccttc 281  Q
    |||||||| |||||||| ||| ||||||||  ||||||||||| ||| ||||||||||||||||||||| | || || ||| |   || ||||| |||||    
T  31064502 gtgttgacgaactattcttttattctccctctttttatgtcccttcggatttaaagagtgttcttaagatcatagtctctttggtttaaaatgtcccttc 31064403  T
Q  282 agaattaataatggtcttaagagcataatcccttcggcaaaactttgtccctttaaaaataagagtatttttaaaatcatagtcctt 368  Q
     ||||| | ||||||||||||| |||| ||||||||| |||| || |||||||   |||||||| |||| |||| ||||||||||||    
T  31064402 ggaattgagaatggtcttaagaacatagtcccttcggtaaaa-ttagtcccttctgaaataagactattcttaagatcatagtcctt 31064317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 213 - 366
Target Start/End: Original strand, 23191600 - 23191753
Alignment:
Q  213 ctttttatgtcccgtcgtatttaaagagtgttcttaagaacttaatcccttcgagatataatgtcc-ttcagaattaataatggtcttaagagcataatc 311  Q
    |||||| |||| ||||| ||||||||||| || |||||| | |  ||||||| ||| ||||||||| ||| ||||||| ||| |||| || | |||| ||    
T  23191600 ctttttctgtctcgtcggatttaaagagtttttttaagaccatggtcccttcaagaaataatgtcccttcggaattaagaatagtctcaatatcatagtc 23191699  T
Q  312 ccttcggcaaaactttgtccctttaaaaataagagtatttttaaaatcatagtcc 366  Q
     |||||| |||  |||||||||||||||||||||||||| |||| ||||||||||    
T  23191700 tcttcggtaaat-tttgtccctttaaaaataagagtattcttaagatcatagtcc 23191753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 185 - 366
Target Start/End: Original strand, 27761389 - 27761571
Alignment:
Q  185 gtgttgacaaactattcatttcttctccct--ttttatgtcccgtcgtatttaaagagtgttcttaagaacttaatcccttcgagatataatgt-ccttc 281  Q
    |||||||| | |||||| |||| |||||||  |||| |||||| ||| ||||||||||||||||||||  | || |||||| |   || ||||| |||||    
T  27761389 gtgttgacgagctattcttttcctctccctctttttctgtcccttcgaatttaaagagtgttcttaaggccatagtccctttggtttaaaatgtcccttc 27761488  T
Q  282 agaattaataatggtcttaagagcataatcccttcggcaaaactttgtccctttaaaaataagagtatttttaaaatcatagtcc 366  Q
    |||| ||| |||||||||||||  ||| ||||||||| |||| || ||||||| |||||||||||| || |||| ||||||||||    
T  27761489 agaa-taagaatggtcttaagaaaatagtcccttcggtaaaa-ttcgtcccttcaaaaataagagtgttcttaagatcatagtcc 27761571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 231 - 366
Target Start/End: Original strand, 28857659 - 28857794
Alignment:
Q  231 atttaaagagtgttcttaagaacttaatcccttcgagatataatgtcc-ttcagaattaataatggtcttaagagcataatcccttcggcaaaactttgt 329  Q
    |||||| |||||||||| ||  |||| ||| ||||   || ||||||| ||||||||||| ||||||||||||| |||| ||||||||| |||| || ||    
T  28857659 atttaatgagtgttcttcaggtcttagtcctttcggtttaaaatgtccattcagaattaagaatggtcttaagaacatagtcccttcggtaaaa-ttcgt 28857757  T
Q  330 ccctttaaaaataagagtatttttaaaatcatagtcc 366  Q
    ||||| | ||||||||||||| |||| ||||||||||    
T  28857758 cccttcagaaataagagtattcttaagatcatagtcc 28857794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 185 - 296
Target Start/End: Complemental strand, 12906688 - 12906574
Alignment:
Q  185 gtgttgacaaactattcatttcttctccct--ttttatgtcccgtcgtatttaaagagtgttcttaagaacttaatcccttcgagatataatgt-ccttc 281  Q
    |||||||| | |||||| ||||||||||||  |||| |||||| ||| ||||||||||||||||||||  | || ||||||||   |||||||| |||||    
T  12906688 gtgttgacgagctattcttttcttctccctctttttctgtcccttcggatttaaagagtgttcttaaggccatagtcccttcggtttataatgtcccttc 12906589  T
Q  282 agaattaataatggt 296  Q
     ||||||| ||||||    
T  12906588 ggaattaagaatggt 12906574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 213 - 355
Target Start/End: Original strand, 24159399 - 24159541
Alignment:
Q  213 ctttttatgtcccgtcgtatttaaagagtgttcttaagaacttaatcccttcgagatataatgt-ccttcagaattaataatggtcttaagagcataatc 311  Q
    |||||| |||||| ||  |||||||| |||||||||||  | || ||||||||   || ||||| ||||| ||||||| || |||||||||| |||| ||    
T  24159399 ctttttctgtcccttcagatttaaagggtgttcttaaggccatagtcccttcggtttaaaatgtcccttcggaattaagaacggtcttaagaacatagtc 24159498  T
Q  312 ccttcggcaaaactttgtccctttaaaaataagagtatttttaa 355  Q
    ||||||| |||| || ||||||| | ||||||||||||| ||||    
T  24159499 ccttcggtaaaa-ttcgtcccttcagaaataagagtattcttaa 24159541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 250
Target Start/End: Complemental strand, 36725254 - 36725187
Alignment:
Q  185 gtgttgacaaactattcatttcttctccct--ttttatgtcccgtcgtatttaaagagtgttcttaag 250  Q
    |||||||| | |||||| ||||||||||||  |||| |||||| ||| ||||||||||||||||||||    
T  36725254 gtgttgacgagctattcttttcttctccctctttttctgtcccttcggatttaaagagtgttcttaag 36725187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 3e-24; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 185 - 366
Target Start/End: Original strand, 32814619 - 32814802
Alignment:
Q  185 gtgttgacaaactattcatttcttctccct--ttttatgtcccgtcgtatttaaagagtgttcttaagaacttaatcccttcgagatataatgt-ccttc 281  Q
    |||||||| | |||||| |||| |||||||  ||||||||||||||  ||||||||||||||||||||| | || ||||||| ||| ||||| | |||||    
T  32814619 gtgttgacgagctattcttttcctctccctctttttatgtcccgtcaaatttaaagagtgttcttaagaccatagtcccttcaagaaataatttcccttc 32814718  T
Q  282 agaattaataatggtcttaagagcataatcccttcggcaaaactttgtccctttaaaaataagagtatttttaaaatcatagtcc 366  Q
    |||||||| ||| |||| |||||| || |||||||||  ||| ||||||||||  ||||||||  |||| |||| ||||||||||    
T  32814719 agaattaagaatagtctcaagagcttagtcccttcgg-taaattttgtcccttcgaaaataagtttattcttaatatcatagtcc 32814802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 185 - 366
Target Start/End: Complemental strand, 14042190 - 14042007
Alignment:
Q  185 gtgttgacaaactattcatttcttctccct--ttttatgtcccgtcgtatttaaagagtgttcttaagaacttaatcccttcgagatataatgtcc-ttc 281  Q
    |||||||| | |||||| ||||||||||||  |||| |||||| ||| |||||||| ||||||| |||  | || ||||||||   |||||||||| |||    
T  14042190 gtgttgacgagctattcttttcttctccctctttttctgtcccttcggatttaaagtgtgttctaaaggccatagtcccttcggtttataatgtcccttc 14042091  T
Q  282 agaattaataatggtcttaagagcataatcccttcggcaaaactttgtccctttaaaaataagagtatttttaaaatcatagtcc 366  Q
      |||||| ||||||||||||| |||| | ||||||| |||  ||||||||||  |||||||||||||| |||| |||| |||||    
T  14042090 gaaattaagaatggtcttaagaacatagttccttcggtaaat-tttgtcccttcgaaaataagagtattcttaagatcaaagtcc 14042007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 187 - 366
Target Start/End: Complemental strand, 35130170 - 35129990
Alignment:
Q  187 gttgacaaactattcatttcttctccct--ttttatgtcccgtcgtatttaaagagtgttcttaagaacttaatcccttcgagatataatgtcc-ttcag 283  Q
    |||||||| |||||| |||| |||||||  |||| |||||| ||| ||||||||| ||||||||||  | || ||||||||   |||||||||| ||| |    
T  35130170 gttgacaatctattcttttcctctccctctttttctgtcccttcggatttaaagaatgttcttaaggtcatagtcccttcggtttataatgtccattcgg 35130071  T
Q  284 aattaataatggtcttaagagcataatcccttcggcaaaactttgtccctttaaaaataagagtatttttaaaatcatagtcc 366  Q
    |||||| ||||||||||||| |||| || ||||||  ||| ||||| ||||  |||||||||||||| |||| |||| |||||    
T  35130070 aattaagaatggtcttaagaacatagtctcttcgg-taaattttgt-ccttcgaaaataagagtattcttaagatcaaagtcc 35129990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 185 - 251
Target Start/End: Original strand, 28969592 - 28969660
Alignment:
Q  185 gtgttgacaaactattcatttcttctcccttttt--atgtcccgtcgtatttaaagagtgttcttaaga 251  Q
    |||||||| | |||||| |||||||||||| |||  ||||||||||| |||| ||||||||||||||||    
T  28969592 gtgttgacgagctattcttttcttctccctcttttcatgtcccgtcggattttaagagtgttcttaaga 28969660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 283 - 366
Target Start/End: Complemental strand, 5496312 - 5496230
Alignment:
Q  283 gaattaataatggtcttaagagcataatcccttcggcaaaactttgtccctttaaaaataagagtatttttaaaatcatagtcc 366  Q
    ||||||| |||||||||||||||||| | |||||||  ||| ||| ||||||  ||||| |||||||| |||| ||||||||||    
T  5496312 gaattaaaaatggtcttaagagcatagttccttcgg-taaattttatcccttcgaaaattagagtattattaagatcatagtcc 5496230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 317
Target Start/End: Complemental strand, 22610094 - 22610012
Alignment:
Q  236 aagagtgttcttaagaacttaatcccttcgagatataatgtc-cttcagaattaataatggtcttaagagcataatcccttcg 317  Q
    |||||||||||||||| | |||||||||   | ||||||||| |||| ||||||| |||||| ||||||||||| || |||||    
T  22610094 aagagtgttcttaagaccataatcccttttcggtataatgtcacttcggaattaagaatggttttaagagcatagtctcttcg 22610012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 308
Target Start/End: Original strand, 32551077 - 32551175
Alignment:
Q  211 ccctttttatgtcccgtcgtatttaaagagtgttcttaagaacttaatcccttcgagatataatgtcc-ttcagaattaataatggtcttaagagcata 308  Q
    |||||||||| || ||||  ||||| |||||||||||||||   || | |||||||| ||||||||||  ||| |||||||||| ||||||||| ||||    
T  32551077 ccctttttatttctcgtcagatttatagagtgttcttaagactatagttccttcgagttataatgtccgatcaaaattaataatagtcttaagaacata 32551175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 276 - 316
Target Start/End: Complemental strand, 8748267 - 8748227
Alignment:
Q  276 tccttcagaattaataatggtcttaagagcataatcccttc 316  Q
    ||||||| ||| ||||||||||||||||||||| |||||||    
T  8748267 tccttcacaatcaataatggtcttaagagcatagtcccttc 8748227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 236 - 315
Target Start/End: Complemental strand, 17914136 - 17914056
Alignment:
Q  236 aagagtgttcttaagaacttaatcccttcgagatataatgtcc-ttcagaattaataatggtcttaagagcataatccctt 315  Q
    |||||||||||||||| | || ||| ||   |||||||||||| ||| ||||||| |||||||||||| ||||| ||||||    
T  17914136 aagagtgttcttaagaccatagtccattttcgatataatgtcccttcggaattaagaatggtcttaagtgcatagtccctt 17914056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 7e-22; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 214 - 366
Target Start/End: Complemental strand, 2470491 - 2470339
Alignment:
Q  214 tttttatgtcccgtcgtatttaaagagtgttcttaagaacttaatcccttcgagatataatgt-ccttcagaattaataatggtcttaagagcataatcc 312  Q
    ||||| |||||| ||| ||||||||||||||||||||  | || |||||||    || ||||| ||||| ||||||| ||||||||||||| ||||  ||    
T  2470491 tttttctgtcccttcggatttaaagagtgttcttaaggtcatagtcccttcagtttaaaatgtcccttctgaattaagaatggtcttaagaacatagccc 2470392  T
Q  313 cttcggcaaaactttgtccctttaaaaataagagtatttttaaaatcatagtcc 366  Q
    |||||| |||| || ||||||| |||||||||||||||||||| ||||||||||    
T  2470391 cttcggtaaaa-ttcgtcccttcaaaaataagagtatttttaagatcatagtcc 2470339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 185 - 366
Target Start/End: Complemental strand, 19950365 - 19950182
Alignment:
Q  185 gtgttgacaaactattcatttcttctccctttttat--gtcccgtcgtatttaaagagtgttcttaagaacttaatcccttcgagatataatgtcc-ttc 281  Q
    |||||||| | |||||| |||| ||||||| ||| |  ||||| ||| ||||||||||||||||||||  | || ||||||||   || ||||||| |||    
T  19950365 gtgttgacgagctattcttttcctctccctctttttccgtcccttcggatttaaagagtgttcttaaggtcatagtcccttcggtttaaaatgtccattc 19950266  T
Q  282 agaattaataatggtcttaagagcataatcccttcggcaaaactttgtccctttaaaaataagagtatttttaaaatcatagtcc 366  Q
     |||| || ||||||||||||| |||| ||||||||| |||| |||||||| | | ||||||||||||| |||| ||||||||||    
T  19950265 ggaataaagaatggtcttaagaacatagtcccttcggtaaaa-tttgtcccatcagaaataagagtattcttaagatcatagtcc 19950182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 185 - 366
Target Start/End: Complemental strand, 19954819 - 19954636
Alignment:
Q  185 gtgttgacaaactattcatttcttctccct--ttttatgtcccgtcgtatttaaagagtgttcttaagaacttaatcccttcgagatataatgt-ccttc 281  Q
    |||||||| | |||||| |||| |||||||  |||| | |||| ||| ||||||||||||||||||||  | || || |||||   || ||||| |||||    
T  19954819 gtgttgacgagctattcttttcctctccctctttttctctcccttcggatttaaagagtgttcttaaggccatagtctcttcggtttaaaatgtcccttc 19954720  T
Q  282 agaattaataatggtcttaagagcataatcccttcggcaaaactttgtccctttaaaaataagagtatttttaaaatcatagtcc 366  Q
     |||| || ||||||||||||| |||| ||||||||| |||| |||||||||| | ||||||||||||| |||| | ||||||||    
T  19954719 ggaataaagaatggtcttaagaacatagtcccttcggtaaaa-tttgtcccttcagaaataagagtattcttaagagcatagtcc 19954636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 258 - 315
Target Start/End: Original strand, 21416377 - 21416435
Alignment:
Q  258 tcccttcgagatataatgtcc-ttcagaattaataatggtcttaagagcataatccctt 315  Q
    ||||||||||| ||||||||| || |||||||| ||||||||||| |||||||||||||    
T  21416377 tcccttcgagaaataatgtcccttgagaattaagaatggtcttaatagcataatccctt 21416435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 291 - 366
Target Start/End: Original strand, 4543950 - 4544024
Alignment:
Q  291 aatggtcttaagagcataatcccttcggcaaaactttgtccctttaaaaataagagtatttttaaaatcatagtcc 366  Q
    ||||||||||||| |||| ||||||||| |||| || ||||||| | |||||| |||||| |||| ||||||||||    
T  4543950 aatggtcttaagaacatagtcccttcggtaaaa-ttcgtcccttcagaaataaaagtattcttaagatcatagtcc 4544024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 251
Target Start/End: Complemental strand, 34517714 - 34517677
Alignment:
Q  214 tttttatgtcccgtcgtatttaaagagtgttcttaaga 251  Q
    |||||||||||||||| |||||||||||||| ||||||    
T  34517714 tttttatgtcccgtcggatttaaagagtgtttttaaga 34517677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 349
Target Start/End: Complemental strand, 29793214 - 29793081
Alignment:
Q  215 ttttatgtcccgtcgtatttaaagagtgttcttaagaacttaatcccttcgagatataatg-tccttcagaattaataatggtcttaagagcataatccc 313  Q
    |||| |||||| ||| |||||| ||| |  ||||||| | |||||||||||| |||||||| | ||||  |||||| |||| |||||||||| ||||| |    
T  29793214 ttttttgtcccttcgaatttaatgagcgaccttaagaccataatcccttcgaaatataatgtttcttcgaaattaagaatgatcttaagagcttaatctc 29793115  T
Q  314 ttcggcaaaactttgtccctttaaaaataagagtat 349  Q
    || |  | || |||||||||| |||| |||||||||    
T  29793114 tttg--ataattttgtcccttcaaaattaagagtat 29793081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 277 - 317
Target Start/End: Original strand, 31449476 - 31449516
Alignment:
Q  277 ccttcagaattaataatggtcttaagagcataatcccttcg 317  Q
    ||||| ||||||| |||||||||||||||||| ||||||||    
T  31449476 ccttcggaattaagaatggtcttaagagcatagtcccttcg 31449516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 236 - 316
Target Start/End: Original strand, 43302253 - 43302336
Alignment:
Q  236 aagagtgttcttaagaactta--atcccttcgagatataatgtcc-ttcagaattaataatggtcttaagagcataatcccttc 316  Q
    |||||||||||||||| | ||  |||||||   |||||| ||||| ||| |||| ||||||||||||||||||||| |||||||    
T  43302253 aagagtgttcttaagaccatataatcccttgtcgatatattgtccattcggaatcaataatggtcttaagagcatagtcccttc 43302336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 4e-20; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 220 - 365
Target Start/End: Complemental strand, 4662674 - 4662529
Alignment:
Q  220 tgtcccgtcgtatttaaagagtgttcttaagaacttaatcccttcgagatataatgtcc-ttcagaattaataatggtcttaagagcataatcccttcgg 318  Q
    |||||| ||| ||||||||||||||||||||  | || ||||||||   || ||||||| ||| ||||||| ||||||||||||| |||| ||||||||     
T  4662674 tgtcccttcggatttaaagagtgttcttaaggccatagtcccttcggtttaaaatgtcccttcggaattaagaatggtcttaagaacatagtcccttcga 4662575  T
Q  319 caaaactttgtccctttaaaaataagagtatttttaaaatcatagtc 365  Q
     |||| || ||||||| ||||||||||||||| |||| |||||||||    
T  4662574 taaaa-ttcgtcccttaaaaaataagagtattcttaagatcatagtc 4662529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 185 - 250
Target Start/End: Original strand, 48435435 - 48435500
Alignment:
Q  185 gtgttgacaaactattcatttcttctccctttttatgtcccgtcgtatttaaagagtgttcttaag 250  Q
    |||||||||| |||||| |||| |||| ||||||||||||| ||  ||||||||||||||||||||    
T  48435435 gtgttgacaagctattcttttcctctctctttttatgtcccttcagatttaaagagtgttcttaag 48435500  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 317
Target Start/End: Complemental strand, 8888455 - 8888373
Alignment:
Q  236 aagagtgttcttaagaacttaatcccttcgagatataatgtcc-ttcagaattaataatggtcttaagagcataatcccttcg 317  Q
    |||||||||||||||| | || ||||||   | | |||||||| ||| ||||||| |||||||||||||||||| ||||||||    
T  8888455 aagagtgttcttaagaccatagtcccttttcggtttaatgtcccttcggaattaagaatggtcttaagagcatagtcccttcg 8888373  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 311
Target Start/End: Original strand, 35456510 - 35456584
Alignment:
Q  238 gagtgttcttaagaacttaatcccttcgagatataatgtcc-ttcagaattaataatggtcttaagagcataatc 311  Q
    |||||||||||||| |||||| |||    | |||||||||| ||| ||||||| |||||||||||||||||||||    
T  35456510 gagtgttcttaagaccttaattcctattcggtataatgtcccttcggaattaagaatggtcttaagagcataatc 35456584  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 277
Target Start/End: Original strand, 29067681 - 29067738
Alignment:
Q  220 tgtcccgtcgtatttaaagagtgttcttaagaacttaatcccttcgagatataatgtc 277  Q
    |||||||||| |||||||||||||| |||||| | || || ||||||| |||||||||    
T  29067681 tgtcccgtcgaatttaaagagtgtttttaagatcatagtcacttcgagttataatgtc 29067738  T

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Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 185 - 366
Target Start/End: Original strand, 18265054 - 18265236
Alignment:
Q  185 gtgttgacaaactattcatttcttctccct--ttttatgtcccgtcgtatttaaagagtgttcttaagaacttaatcccttcgagatataatg-tccttc 281  Q
    |||||||| | |||||| |||| |||||||  |||| |||||| ||| ||||||||||||||||||||  | || ||||||||   || |||| ||||||    
T  18265054 gtgttgacgagctattcttttcctctccctctttttctgtcccttcggatttaaagagtgttcttaaggccctagtcccttcggtttaaaatgttccttc 18265153  T
Q  282 agaattaataatggtcttaagagcataatcccttcggcaaaactttgtccctttaaaaataagagtatttttaaaatcatagtcc 366  Q
     ||| ||| ||||||||||||| |||| ||||||||| |||| || ||||||| | ||||||||||||| |||| ||||||||||    
T  18265154 -gaaataagaatggtcttaagaacatagtcccttcggtaaaa-ttcgtcccttcagaaataagagtattcttaagatcatagtcc 18265236  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 276 - 317
Target Start/End: Original strand, 6155022 - 6155063
Alignment:
Q  276 tccttcagaattaataatggtcttaagagcataatcccttcg 317  Q
    ||||||||||| ||||||||||||||||||||| ||||||||    
T  6155022 tccttcagaatcaataatggtcttaagagcatagtcccttcg 6155063  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 283 - 316
Target Start/End: Original strand, 1429724 - 1429757
Alignment:
Q  283 gaattaataatggtcttaagagcataatcccttc 316  Q
    |||||||||||||||||||||||||| |||||||    
T  1429724 gaattaataatggtcttaagagcatagtcccttc 1429757  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 251
Target Start/End: Original strand, 16747778 - 16747846
Alignment:
Q  185 gtgttgacaaactattcatttcttctccc--tttttatgtcccgtcgtatttaaagagtgttcttaaga 251  Q
    |||||||| | ||||||||||||||||||  ||||||||| || ||| ||||||| | |||||||||||    
T  16747778 gtgttgacgagctattcatttcttctccctttttttatgttccatcggatttaaaaaatgttcttaaga 16747846  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 276 - 317
Target Start/End: Original strand, 32461156 - 32461197
Alignment:
Q  276 tccttcagaattaataatggtcttaagagcataatcccttcg 317  Q
    |||||| |||| ||||||||||||||||||||| ||||||||    
T  32461156 tccttcggaatcaataatggtcttaagagcatagtcccttcg 32461197  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 308
Target Start/End: Original strand, 13290886 - 13290926
Alignment:
Q  269 tataatgtcctt-cagaattaataatggtcttaagagcata 308  Q
    |||||||||||| ||||||||| ||||||||||||||||||    
T  13290886 tataatgtcctttcagaattaaaaatggtcttaagagcata 13290926  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 317
Target Start/End: Original strand, 16639150 - 16639202
Alignment:
Q  266 agatataatgtcc-ttcagaattaataatggtcttaagagcataatcccttcg 317  Q
    ||||||||||||| || |||||||| |||| ||||||||||||| ||||||||    
T  16639150 agatataatgtccctttagaattaaaaatgatcttaagagcatagtcccttcg 16639202  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 236 - 317
Target Start/End: Original strand, 13291079 - 13291161
Alignment:
Q  236 aagagtgttcttaagaacttaatcccttcgagatataatgtcc-ttcagaattaataatggtcttaagagcataatcccttcg 317  Q
    |||||||||||||||| | ||  |||||| ||||||||||||| ||| ||||| | |||||||||||||| ||||||||||||    
T  13291079 aagagtgttcttaagatcatagacccttctagatataatgtcccttcggaattgacaatggtcttaagagtataatcccttcg 13291161  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 283 - 366
Target Start/End: Complemental strand, 14105036 - 14104954
Alignment:
Q  283 gaattaataatggtcttaagagcataatcccttcggcaaaactttgtccctttaaaaataagagtatttttaaaatcatagtcc 366  Q
    ||||||| ||||||||||||| |||| |||||||||  ||| || ||||||| | ||||||||||||| |||| ||||||||||    
T  14105036 gaattaagaatggtcttaagaacatagtcccttcgg-taaatttcgtcccttcagaaataagagtattcttaagatcatagtcc 14104954  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 214 - 308
Target Start/End: Original strand, 41558643 - 41558738
Alignment:
Q  214 tttttatgtcccgtcgtatttaaagagtgttcttaagaacttaatcccttcgagatataatgt-ccttcagaattaataatggtcttaagagcata 308  Q
    ||||| |||||||||| ||||||||||||||| || || | || |||||| |||| |||| || |||||| |||||| |||| |||||||||||||    
T  41558643 tttttttgtcccgtcggatttaaagagtgttcatatgaccatagtccctttgagaaataacgtcccttcaaaattaaaaatgttcttaagagcata 41558738  T

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Target: scaffold0018 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 277 - 365
Target Start/End: Original strand, 171358 - 171444
Alignment:
Q  277 ccttcagaattaataatggtcttaagagcataatcccttcggcaaaactttgtccctttaaaaataagagtatttttaaaatcatagtc 365  Q
    ||||| ||||||| ||||||||||||| | || ||||||||  |||  |||||||||| | |||||||||||||||||| |||||||||    
T  171358 ccttcggaattaagaatggtcttaagaacgtagtcccttcgataaa--tttgtcccttcagaaataagagtatttttaagatcatagtc 171444  T

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Target: scaffold0555 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0555
Description:

Target: scaffold0555; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 186 - 250
Target Start/End: Complemental strand, 4822 - 4756
Alignment:
Q  186 tgttgacaaactattcatttcttctccct--ttttatgtcccgtcgtatttaaagagtgttcttaag 250  Q
    ||||||| | |||||| ||||||||||||  |||| |||||| ||| ||||||||||||||||||||    
T  4822 tgttgacgagctattcttttcttctccctctttttttgtcccttcggatttaaagagtgttcttaag 4756  T

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Target: scaffold0009 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 186 - 262
Target Start/End: Original strand, 148757 - 148835
Alignment:
Q  186 tgttgacaaactattcatttcttctccct--ttttatgtcccgtcgtatttaaagagtgttcttaagaacttaatccct 262  Q
    |||||||||||||||| |||| ||| |||  |||| |||||||||| | || |||||||||||||||| | ||||||||    
T  148757 tgttgacaaactattcttttcctctacctctttttctgtcccgtcggactttaagagtgttcttaagaccataatccct 148835  T

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Target: scaffold0182 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 317
Target Start/End: Original strand, 9450 - 9532
Alignment:
Q  236 aagagtgttcttaagaacttaatcccttcgagatataatgtcc-ttcagaattaataatggtcttaagagcataatcccttcg 317  Q
    |||||||||||||||| | || ||||||   | | |||||||| ||| ||||||| |||||||||||||||||| ||||||||    
T  9450 aagagtgttcttaagaccatagtcccttttcggtttaatgtccattcggaattaagaatggtcttaagagcatagtcccttcg 9532  T

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Target: scaffold0226 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0226
Description:

Target: scaffold0226; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 314
Target Start/End: Original strand, 5811 - 5943
Alignment:
Q  185 gtgttgacaaactattcatttcttctccctttttat--gtcccgtcgtatttaaagagtgttcttaagaacttaatcccttcgagatataatgtcc-ttc 281  Q
    |||||||| | |||||| ||| |||||||| ||| |  ||||| ||| |||||||||||||| |||||  | || ||||||||   |||||||||| |||    
T  5811 gtgttgacgagctattctttttttctccctcttttttagtcccttcggatttaaagagtgtttttaaggccatagtcccttcggtttataatgtcccttc 5910  T
Q  282 agaattaataatggtcttaagagcataatccct 314  Q
      |||||| ||||||||||||| |||| |||||    
T  5911 gaaattaagaatggtcttaagaacatagtccct 5943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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