View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18311_low_9 (Length: 245)
Name: NF18311_low_9
Description: NF18311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18311_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 10 - 232
Target Start/End: Complemental strand, 5116743 - 5116521
Alignment:
| Q |
10 |
ttatacttctgaaaattatattagacgatgatggtttggctcgtgtttgtgctacaacagagaannnnnnnggagtatgtcgagttttgaacatgatgtt |
109 |
Q |
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| T |
5116743 |
ttataattctgaaaattatattagacgatgatggtttggctcgtgtttgtgctacaacagagaatttttttggagtatgtcgagttttgaacatgatgtt |
5116644 |
T |
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| Q |
110 |
ggaagatcttgagaatccaccctcacctcgtttgttgaggcttttgatttcatgttattctcgcttatctcaaaattacaggttggttgagaagttccat |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
5116643 |
ggaagatcttgagaatccaccctcacctcgtttgttgaggcttttgatttcatgttattctcgtttatctcaaaattacaggttggttgagaagttccat |
5116544 |
T |
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| Q |
210 |
gatcttaagaatggttgaatatg |
232 |
Q |
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||||||||||||||||||||||| |
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| T |
5116543 |
gatcttaagaatggttgaatatg |
5116521 |
T |
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