View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18312_high_10 (Length: 264)

Name: NF18312_high_10

Description: NF18312

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF18312_high_10

[»] chr6 (2 HSPs)

Target: chr6 (Bit Score: 180; Significance: 3e-97; HSPs: 2)

Name: chr6

Description:

Target: chr6; HSP #1

Raw Score: 180; E-Value: 3e-97

Query Start/End: Original strand, 11 - 264

Target Start/End: Original strand, 15396769 - 15397010

Alignment:

Q	11	caaaggtacaacaaaaaccctcatgatgctgagaatttgacaagatggggtgttgctttgttacgattatctcaggctcactcttttcctgattcgctac	110	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	15396769	caaaggtacaacaaaaaccctcatgatgctgagaatttgacaagatggggtgttgctttgttacgattatctcaggctcactcttttcctgattcgctac	15396868	T

Q	111	ataccattcaaggtatatattatatgctgttttattcatgaaatattattcatcattttagggtttaatccgtggtttactcgaccactaatactattta	210	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|
T	15396869	ataccattcaaggtatattatatatgctgttttatacatgaa---------atcattttagggtttaatcggtggtttactcaaccactaatgctattta	15396959	T

Q	211	cagcgaaacatatttcaataacatacctcctgattgctagcatcgctgttttct	264	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|
T	15396960	cagcgaaacatatttcaataacata---cctgattgctagcatcactgttttct	15397010	T

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Target: chr6; HSP #2

Raw Score: 37; E-Value: 0.000000000006

Query Start/End: Original strand, 42 - 126

Target Start/End: Original strand, 5947166 - 5947250

Alignment:

Q	42	agaatttgacaagatggggtgttgctttgttacgattatctcaggctcactcttttcctgattcgctacataccattcaaggtat	126	Q
		\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|
T	5947166	agaatttgactcgatgggctgttgctttgttacgattatcctcggatcagtcttttcctgattcattacataccgttgaaggtat	5947250	T

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