View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18312_high_6 (Length: 354)
Name: NF18312_high_6
Description: NF18312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18312_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 30 - 339
Target Start/End: Complemental strand, 386980 - 386671
Alignment:
| Q |
30 |
ggtggcacaattcctccgcttccaacactccaaatatgctattatagacaaatcgtatggcattctaaagcaggtttcacactagcagtatgttatttat |
129 |
Q |
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| T |
386980 |
ggtggcacaattcctccgcttccaacactccaaatatgctattatagacaaatcgtatggcattctaaagcaggtttcacactagcagtatgttatttat |
386881 |
T |
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| Q |
130 |
aaatgttaaagataaagcaaacattataaagttgtttttataagtcacttaaccaaagaagtaaagtaaatgttagatataataatccaaatatttagag |
229 |
Q |
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| T |
386880 |
aaatgttaaagataaagcaaacattataaagttgtttttataagtcacttaaccaaagaagtaaagtaaatgttagatataataatccaaatatttagag |
386781 |
T |
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| Q |
230 |
atgaagcaaattgtatgacattcattctacaataaaaactaaaaatgctctttaaatcagaagtccaatgttgggtgctctttggccaaagtagacctca |
329 |
Q |
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| T |
386780 |
atgaagcaaattgtatgacattcattctacaataaaaactaaaaatactctttaaatcagaagtccaatgttgggtgctctttggccaaagtagacctca |
386681 |
T |
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| Q |
330 |
ccgttggaat |
339 |
Q |
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| T |
386680 |
ccgttggaat |
386671 |
T |
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