View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18312_high_8 (Length: 287)
Name: NF18312_high_8
Description: NF18312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18312_high_8 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 9502579 - 9502302
Alignment:
| Q |
1 |
tccatttccttcctacagcctatggttgacaccgaaccatacgatagaggtcgctgttgttgttgataatgcttcacctgcaaataataaacaatgaaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9502579 |
tccatttccttcctacagcctatggttgacaccgaaccatacgatagaggtcgctgttgttgttgataatgcttcacctgcaaataataaacaatgaaat |
9502480 |
T |
|
| Q |
101 |
aatatgagacgcactgtcctcaacgattttccttgtataataagctaacaac---aacagtgtacctctccgttttgcttggacagctgatcatcttcct |
197 |
Q |
| |
|
||||||||||||||||||||||| |||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9502479 |
aatatgagacgcactgtcctcaaggattttccgtgtataataagctaacaacaacaacagtgtacctctccgttttgcttggacagctgatcatcttcct |
9502380 |
T |
|
| Q |
198 |
ccgatgatgacgaagttgctaacgacaacgatatctcaaccgattcatgaatctctcgtcgcgcattctccgttttca |
275 |
Q |
| |
|
| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9502379 |
cagatgatgatgaagttgctaacgacaacgatatctcaacagattcatgaatctctcgtcgcgcattctccgttttca |
9502302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University