View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18312_low_1 (Length: 675)

Name: NF18312_low_1
Description: NF18312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18312_low_1
NF18312_low_1
[»] chr1 (1 HSPs)
chr1 (18-675)||(48501176-48501833)


Alignment Details
Target: chr1 (Bit Score: 642; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 642; E-Value: 0
Query Start/End: Original strand, 18 - 675
Target Start/End: Complemental strand, 48501833 - 48501176
Alignment:
Q  18 gatatttggtcatggatatctgaactccccaactcagtagagtggaggaattatgagtttgactcaccaccaaagttcgaacttgctagagatggacaaa 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  48501833 gatatttggtcatggatatctgaactccccaactcagtagagtggaggaattatgagtttgactcaccaccaaagttcgaacttgctagagatggacata 48501734  T
Q  118 acgattcaactcgttctatttatctcaaagcagagcgaacttttgggtcagactcagaagccttagtaaccttcatggtattcttacaaggcttccatcc 217  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48501733 acgattcaactcgttctatttatctcaaagcagagcgaacttctgggtcagactcagaagccttagtaaccttcatggtattcttacaaggcttccatcc 48501634  T
Q  218 attcaacactcaaaaacctctttggatttccgagaaatgcacactctcttcagaaaaccctaatttcctcccactccttctccaactcctccaagaaatc 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48501633 attcaacactcaaaaacctctttggatttccgagaaatgcacactctcttcagaaaaccctaatttcctcccactccttctccaactcctccaagaaatc 48501534  T
Q  318 atatccaactcacccacagcgcacgatagcacttgccctagatcccagcttcaaaaactcaaaccagagcccattgcatggatcatagactcgcacacac 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48501533 atatccaactcacccacagcgcacgatagcacttgccctagatcccagcttcaaaaactcaaaccagagcccattgcatggatcatagactcgcacacac 48501434  T
Q  418 cagaatctctctccattttcttcaaccttgttttcaccattcgtctcttttggttatgcgcttgcgacgcgcctagcgaagcaggttcactctatttcca 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||    
T  48501433 cagaatctctctccattttcttcaaccttgttttcaccattcgtctcttttggctatgtgcttgcgacgcgcctagcgaagcaggttcactctatttcca 48501334  T
Q  518 ctcgttactcgctccggttctagaaactgcgttgtcaaagaaactagcttcggtgctaagaaccttctttattaccgtaggtgtagacactgaactctgt 617  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48501333 ctcgttactcgctccggttctagaaactgcgttgtcaaagaaactagcttcggtgctaagaaccttctttattaccgtaggtgtagacactgaactctgt 48501234  T
Q  618 ttcatgcgcacccttgggtacataatagcaaaatggtgcattataagagaattgggtg 675  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48501233 ttcatgcgcacccttgggtacataatagcaaaatggtgcattataagagaattgggtg 48501176  T

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