View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18312_low_11 (Length: 264)

Name: NF18312_low_11

Description: NF18312

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF18312_low_11

[»] chr6 (2 HSPs)

Target: chr6 (Bit Score: 180; Significance: 3e-97; HSPs: 2)

Name: chr6

Description:

Target: chr6; HSP #1

Raw Score: 180; E-Value: 3e-97

Query Start/End: Original strand, 11 - 264

Target Start/End: Original strand, 15396769 - 15397010

Alignment:

Q	11	caaaggtacaacaaaaaccctcatgatgctgagaatttgacaagatggggtgttgctttgttacgattatctcaggctcactcttttcctgattcgctac	110	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	15396769	caaaggtacaacaaaaaccctcatgatgctgagaatttgacaagatggggtgttgctttgttacgattatctcaggctcactcttttcctgattcgctac	15396868	T

Q	111	ataccattcaaggtatatattatatgctgttttattcatgaaatattattcatcattttagggtttaatccgtggtttactcgaccactaatactattta	210	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|
T	15396869	ataccattcaaggtatattatatatgctgttttatacatgaa---------atcattttagggtttaatcggtggtttactcaaccactaatgctattta	15396959	T

Q	211	cagcgaaacatatttcaataacatacctcctgattgctagcatcgctgttttct	264	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|
T	15396960	cagcgaaacatatttcaataacata---cctgattgctagcatcactgttttct	15397010	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2

Raw Score: 37; E-Value: 0.000000000006

Query Start/End: Original strand, 42 - 126

Target Start/End: Original strand, 5947166 - 5947250

Alignment:

Q	42	agaatttgacaagatggggtgttgctttgttacgattatctcaggctcactcttttcctgattcgctacataccattcaaggtat	126	Q
		\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|
T	5947166	agaatttgactcgatgggctgttgctttgttacgattatcctcggatcagtcttttcctgattcattacataccgttgaaggtat	5947250	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]