View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18312_low_12 (Length: 255)

Name: NF18312_low_12
Description: NF18312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18312_low_12
NF18312_low_12
[»] chr4 (5 HSPs)
chr4 (60-237)||(33690309-33690486)
chr4 (56-132)||(22289951-22290027)
chr4 (56-125)||(45976986-45977055)
chr4 (57-97)||(16904949-16904989)
chr4 (59-111)||(18209689-18209741)
[»] scaffold0019 (2 HSPs)
scaffold0019 (62-237)||(177829-178004)
scaffold0019 (62-237)||(149024-149200)
[»] chr6 (3 HSPs)
chr6 (59-189)||(15432336-15432467)
chr6 (59-111)||(162668-162720)
chr6 (60-96)||(11179440-11179476)
[»] chr7 (2 HSPs)
chr7 (58-121)||(27903415-27903478)
chr7 (59-96)||(11001323-11001360)
[»] chr8 (1 HSPs)
chr8 (59-97)||(11725382-11725420)
[»] chr3 (1 HSPs)
chr3 (58-96)||(37252311-37252349)
[»] chr1 (1 HSPs)
chr1 (55-97)||(9216223-9216265)
[»] chr5 (2 HSPs)
chr5 (57-97)||(10729439-10729479)
chr5 (57-97)||(34107335-34107375)


Alignment Details
Target: chr4 (Bit Score: 142; Significance: 1e-74; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 60 - 237
Target Start/End: Complemental strand, 33690486 - 33690309
Alignment:
Q  60 actagaccttccacccgtgctggtgcacgggtcatatatatcgaaaatgtagcaggcaaaaataaaatgacatttatataccaagcttaaaactttaacg 159  Q
    |||||||||||||| ||||||| |||| | |||||||||||||||||||||| ||| ||||| |||||||||||||||||||||||||||||||||||||    
T  33690486 actagaccttccactcgtgctgctgcaggagtcatatatatcgaaaatgtagtaggtaaaaacaaaatgacatttatataccaagcttaaaactttaacg 33690387  T
Q  160 ttatgataattagtgcaattatatttgaaggaattcatgtttatacattgcagaaatattatttgaaaactacgtttg 237  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  33690386 ttatgataattaatgcaattatatttgaaggaattcatgtttatacattgcagaaatattctttgaaaactacgtttg 33690309  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 56 - 132
Target Start/End: Original strand, 22289951 - 22290027
Alignment:
Q  56 attaactagaccttccacccgtgctggtgcacgggtcatatatatcgaaaatgtagcaggcaaaaataaaatgacat 132  Q
    |||||||||||||| |||||||||||  ||||| |||||||| || |||||||||| ||||||||| ||||||||||    
T  22289951 attaactagaccttgcacccgtgctgccgcacgagtcatatacattgaaaatgtagaaggcaaaaacaaaatgacat 22290027  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 56 - 125
Target Start/End: Original strand, 45976986 - 45977055
Alignment:
Q  56 attaactagaccttccacccgtgctggtgcacgggtcatatatatcgaaaatgtagcaggcaaaaataaa 125  Q
    ||||| ||||| ||||| |||||||| ||||||||||||||| |||| | |||||| ||  |||||||||    
T  45976986 attaattagactttccatccgtgctgctgcacgggtcatatacatcgtagatgtagtagataaaaataaa 45977055  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 97
Target Start/End: Original strand, 16904949 - 16904989
Alignment:
Q  57 ttaactagaccttccacccgtgctggtgcacgggtcatata 97  Q
    |||||||||| ||||||||||||||  ||||||||||||||    
T  16904949 ttaactagactttccacccgtgctgccgcacgggtcatata 16904989  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 111
Target Start/End: Complemental strand, 18209741 - 18209689
Alignment:
Q  59 aactagaccttccacccgtgctggtgcacgggtcatatatatcgaaaatgtag 111  Q
    |||||||| ||||||||||||||  |||||||||||||| ||  |||||||||    
T  18209741 aactagactttccacccgtgctgccgcacgggtcatatacattcaaaatgtag 18209689  T

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Target: scaffold0019 (Bit Score: 128; Significance: 3e-66; HSPs: 2)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 62 - 237
Target Start/End: Original strand, 177829 - 178004
Alignment:
Q  62 tagaccttccacccgtgctggtgcacgggtcatatatatcgaaaatgtagcaggcaaaaataaaatgacatttatataccaagcttaaaactttaacgtt 161  Q
    ||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| |||||||||||     
T  177829 tagaccttccacccgtgctgccacacgggtcatatatatcgaaaatgtagcaggcaaaaacaaaatgacatttatatacgaagcttagaactttaacgtc 177928  T
Q  162 atgataattagtgcaattatatttgaaggaattcatgtttatacattgcagaaatattatttgaaaactacgtttg 237  Q
    |||||||||| ||||||||||||||| |||||||||||||||||||||||||||  || |||||||||||||||||    
T  177929 atgataattaatgcaattatatttgagggaattcatgtttatacattgcagaaaatttgtttgaaaactacgtttg 178004  T

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Target: scaffold0019; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 62 - 237
Target Start/End: Original strand, 149024 - 149200
Alignment:
Q  62 tagaccttccacccgtgctggtgcacgggtcatatatatcgaaaatgtagcaggcaaaaataaaatgacatttatataccaagcttaaaactttaacgtt 161  Q
    ||||||||||||| ||  || |||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||||||||||     
T  149024 tagaccttccacctgttttgctgcacgggtcatatatatcgaaaatgtagcaggcgaaaacaaaatgacatttatataccaaacttaaaactttaacgtc 149123  T
Q  162 atgataattagtgcaattata-tttgaaggaattcatgtttatacattgcagaaatattatttgaaaactacgtttg 237  Q
    | ||||| || |||||||||| |||||||||||||||||||||||||||||||||  || ||||||| || ||||||    
T  149124 acgataagtaatgcaattatattttgaaggaattcatgtttatacattgcagaaaatttctttgaaacctgcgtttg 149200  T

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Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 59 - 189
Target Start/End: Original strand, 15432336 - 15432467
Alignment:
Q  59 aactagaccttccacccgtgctggtgcacgggtcatatatatcgaaaatgtagcaggcaaaaataaaatgacat-ttatataccaagcttaaaactttaa 157  Q
    |||||||| ||| |||||||| |  |||||||||||||| ||||||||||||| ||||||||| ||| |||||| ||| ||||| | |||||||  ||||    
T  15432336 aactagactttctacccgtgcggccgcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaagtgacatattacatacccaacttaaaatcttaa 15432435  T
Q  158 cgttatgataattagtgcaattatatttgaag 189  Q
     |||||  |||| | | |||||||||| ||||    
T  15432436 tgttatcctaataaatacaattatattggaag 15432467  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 111
Target Start/End: Original strand, 162668 - 162720
Alignment:
Q  59 aactagaccttccacccgtgctggtgcacgggtcatatatatcgaaaatgtag 111  Q
    |||||||| ||||||||||||||  |||||||||||||| ||  |||||||||    
T  162668 aactagactttccacccgtgctgccgcacgggtcatatacattcaaaatgtag 162720  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 96
Target Start/End: Complemental strand, 11179476 - 11179440
Alignment:
Q  60 actagaccttccacccgtgctggtgcacgggtcatat 96  Q
    |||||||||| ||||||||||| ||||||||||||||    
T  11179476 actagaccttgcacccgtgctgctgcacgggtcatat 11179440  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 58 - 121
Target Start/End: Original strand, 27903415 - 27903478
Alignment:
Q  58 taactagaccttccacccgtgctggtgcacgggtcatatatatcgaaaatgtagcaggcaaaaa 121  Q
    ||||||||| ||||||||||||||  ||||||||||||||||| | | |||||| || ||||||    
T  27903415 taactagactttccacccgtgctgccgcacgggtcatatatattgtagatgtagtagacaaaaa 27903478  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 59 - 96
Target Start/End: Original strand, 11001323 - 11001360
Alignment:
Q  59 aactagaccttccacccgtgctggtgcacgggtcatat 96  Q
    |||||||||||||||||||||||  |||||||||||||    
T  11001323 aactagaccttccacccgtgctgccgcacgggtcatat 11001360  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 97
Target Start/End: Complemental strand, 11725420 - 11725382
Alignment:
Q  59 aactagaccttccacccgtgctggtgcacgggtcatata 97  Q
    |||||||| |||||||||||||| |||||||||||||||    
T  11725420 aactagactttccacccgtgctgctgcacgggtcatata 11725382  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 96
Target Start/End: Original strand, 37252311 - 37252349
Alignment:
Q  58 taactagaccttccacccgtgctggtgcacgggtcatat 96  Q
    |||||||||||| ||||||||||| ||||||||||||||    
T  37252311 taactagaccttgcacccgtgctgctgcacgggtcatat 37252349  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 97
Target Start/End: Complemental strand, 9216265 - 9216223
Alignment:
Q  55 cattaactagaccttccacccgtgctggtgcacgggtcatata 97  Q
    |||||||||||| ||||||||||||||  ||||||||||||||    
T  9216265 cattaactagactttccacccgtgctgccgcacgggtcatata 9216223  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 97
Target Start/End: Original strand, 10729439 - 10729479
Alignment:
Q  57 ttaactagaccttccacccgtgctggtgcacgggtcatata 97  Q
    |||||||||| ||||||||||||||  ||||||||||||||    
T  10729439 ttaactagactttccacccgtgctgccgcacgggtcatata 10729479  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 97
Target Start/End: Original strand, 34107335 - 34107375
Alignment:
Q  57 ttaactagaccttccacccgtgctggtgcacgggtcatata 97  Q
    |||||||||| ||||||||||||||  ||||||||||||||    
T  34107335 ttaactagactttccacccgtgctgccgcacgggtcatata 34107375  T

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