View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18312_low_13 (Length: 250)
Name: NF18312_low_13
Description: NF18312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18312_low_13 |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 201; Significance: 1e-110; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 19 - 250
Target Start/End: Complemental strand, 15397330 - 15397098
Alignment:
| Q |
19 |
aaagtgaagtttaacgtcgtgcgagtctggggttaaaagtgcctgcatagtgagagccattcctaggagccaacaaacatcggggttgttgggattcaga |
118 |
Q |
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| T |
15397330 |
aaagtgaagtttagcgtcgtgcgagtctggtgttaaaagtgcctgcatagtgagagccattcctaggagccaatgaacatcagggttgttgggattcaga |
15397231 |
T |
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| Q |
119 |
gaaaaagcctcctccagtttggaaatagacactgaaaaacaagttgaatgaataatcgaaacaaaacagcatataataaaaccataataaacaacagtta |
218 |
Q |
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| T |
15397230 |
gaaaaagcctcctccagtttggaaatagagactgaaaaacaagttgaatgaataatcgaaacaaaacagcatataataaaaccataataaacaacagtta |
15397131 |
T |
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| Q |
219 |
-ctgttttatttcgatcattcattcatttgttt |
250 |
Q |
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| T |
15397130 |
gctgttttatttcgatcattcattcatttgttt |
15397098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 129
Target Start/End: Complemental strand, 5947452 - 5947366
Alignment:
| Q |
43 |
gtctggggttaaaagtgcctgcatagtgagagccattcctaggagccaacaaacatcggggttgttgggattcagagaaaaagcctc |
129 |
Q |
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| T |
5947452 |
gtctggggttaaaattgcctgctcagtgaaagccattccaagcagccaaagaacatccaagtttttgggattgagaggaaaagcctc |
5947366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 153 - 194
Target Start/End: Complemental strand, 15397073 - 15397032
Alignment:
| Q |
153 |
aaaaacaagttgaatgaataatcgaaacaaaacagcatataa |
194 |
Q |
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| T |
15397073 |
aaaaacaagatgaatgaatgatcgaaacaaaacaacatataa |
15397032 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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