View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18312_low_5 (Length: 404)
Name: NF18312_low_5
Description: NF18312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18312_low_5 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 379
Target Start/End: Original strand, 7425498 - 7425872
Alignment:
| Q |
1 |
ggctatttgttaaacagaatctgatgtaaggtgctgtgaagnnnnnnnnaacaaatttaacgaaagttgtatcatgataatacgttgacatttcaactat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||||| |
|
|
| T |
7425498 |
ggctatttgttaaacagaatctgatgtaaggtgctgtgaagttttttttaacaaatttaacgaaagttgcattatgataatacgttgacatttcaactat |
7425597 |
T |
|
| Q |
101 |
gttggtaccacttttacnnnnnnnnnnnn------ctttgtgcggttattaatcctttaaaatctctcttaaggtattattaatataaaatataaaaata |
194 |
Q |
| |
|
|||||||||||||| || || |||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |
|
|
| T |
7425598 |
gttggtaccactttgacaaaaaaaaaaaaaaaaaactctgtgcggtcattaatcctttaaaatctcacttaaagtattattaatataaaatataaaaata |
7425697 |
T |
|
| Q |
195 |
aagggtgaggagaggagacataaaccaaactcatcgaaataagagtaacgaaaacgataagaaggtaaatcaaccatgtctctgaagaaacattttctta |
294 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
7425698 |
aaaggtgaggagaggagacataaaccaaactcatcgaaataagagtaacgaaaacgataagaaggtaaatcaa-----------aagaaacattttctta |
7425786 |
T |
|
| Q |
295 |
aacaactaagtaattgatctaacc-aactaaactattaacaaaaatgttggcatcggttagtctatcttcacaagtatttgtgttg |
379 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
7425787 |
aacaactaagtaattgatctaaccaaactaaactattaacaaaaatgttagcatcggttagtctatcttcacaagtatttgtgttg |
7425872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 268
Target Start/End: Complemental strand, 29493418 - 29493361
Alignment:
| Q |
211 |
gacataaaccaaactcatcgaaataagagtaacgaaaacgataagaaggtaaatcaac |
268 |
Q |
| |
|
||||||||||||||||||| ||| |||| ||| ||||||||||||| |||| ||||| |
|
|
| T |
29493418 |
gacataaaccaaactcatcaaaacaagataaacaaaaacgataagaaagtaagtcaac |
29493361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University