View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18312_low_6 (Length: 384)
Name: NF18312_low_6
Description: NF18312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18312_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 1 - 352
Target Start/End: Original strand, 42516511 - 42516862
Alignment:
| Q |
1 |
tcgacactggcattgagacttgtcttgcaatgaaaatgagtgtcaaagagggtgtttgatatttcttgttgctcaattattctgacattcctcaccctta |
100 |
Q |
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| T |
42516511 |
tcgacactggcattgagacttgtcttgcaatgaaaatgagtgtcaaagagggtgtttgttatttcttgttgctcgattattctgacattcctcacccttg |
42516610 |
T |
|
| Q |
101 |
acctgtaaaggagcaatcactattccataaatcagcctctctattattgcaaataattaatcacaataatttgtatatcaatcatttttattagttgatt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |
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| T |
42516611 |
acctgtaaaggagcaatcactattccataaatcagcctctctattattgcaaataattaatcacaataatttgtatatcaatcatttattttagttgatt |
42516710 |
T |
|
| Q |
201 |
catagaatatgcttgccatgatttgtaataagttgttattatgtgttaccgtacatgacatgattgagctacactgattagaaccgttctgattttcttg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42516711 |
catagaatatgcttgccatgatttgtaataagttgttattatgtgttaccgtacatgacatgattgagctacactgattagaaccgttctgattttcttg |
42516810 |
T |
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| Q |
301 |
ttcaactctattttctttttgattcatttcttttgcattgttagatgtttcg |
352 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
42516811 |
ttcaactctattttcttcttgattcatttcttttgcattgttagatgtttcg |
42516862 |
T |
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