View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18312_low_8 (Length: 313)
Name: NF18312_low_8
Description: NF18312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18312_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 252; Significance: 1e-140; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 46554922 - 46554628
Alignment:
| Q |
1 |
tccaaactacgctcagtatggtcactgctggttccgagggtcccactcaacgtcagcttctctccttcctcggatcagaatccgtccaacatcttaactc |
100 |
Q |
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| T |
46554922 |
tccaaactacgctcagtatggtcactgctggttccgagggtcccactcaacgtcagcttctctccttcctcggatcagaatccatccaccatcttaactc |
46554823 |
T |
|
| Q |
101 |
cttgtcctctcacctcgtttcccatgtgcttaaagacgctgctcccgccggtggtccttccttgtcttctgcatacgctatttgggttgaaaaaacgctt |
200 |
Q |
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| T |
46554822 |
cttgtcctctcacctcgtttcccatgtgcttaaagacgc-----------gtggtctttccttgtcttctgcatacgctatttgggttgaaaaaacgctt |
46554734 |
T |
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| Q |
201 |
tctctttacccttccttcaaagaaactattgctactaattataaggccactctccaatcacatgatttcattaacaaggtaagttgttttatttttattt |
300 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46554733 |
tctctttacccttccttcaaagaaactattgctattaattataaggccactctccaatcacatgatttcattaacaaggtaagttgttttatttttattt |
46554634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 25 - 281
Target Start/End: Original strand, 46531318 - 46531574
Alignment:
| Q |
25 |
ctgctggttccgagggtcccactcaacgtcagcttctctccttcctcggatcagaatccgtccaacatcttaactccttgtcctctcacctcgtttccca |
124 |
Q |
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|||| |||||||||||||| || ||| ||||||||||||||||||| || ||| ||||| | | ||||| |||||||| ||| |||||||| || || |
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| T |
46531318 |
ctgccggttccgagggtccgacgcaatgtcagcttctctccttccttggttcaaaatccattgatcatctcaactccttatccactcacctctttacctc |
46531417 |
T |
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| Q |
125 |
tgtgcttaaagacgctgctcccgccggtggtccttccttgtcttctgcatacgctatttgggttgaaaaaacgctttctctttacccttccttcaaagaa |
224 |
Q |
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| T |
46531418 |
tgtgcttgatgacgctgctccctttggtggaccacagttgtcttttgtcaactctgtgtggtttgaaaaatccctttctctttacccttccttcaaagaa |
46531517 |
T |
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| Q |
225 |
actattgctactaattataaggccactctccaatcacatgatttcattaacaaggta |
281 |
Q |
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| T |
46531518 |
attgttgatactaattattttgccactctcagatcacttgatttcataaacaaggta |
46531574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 251
Target Start/End: Original strand, 46469889 - 46469957
Alignment:
| Q |
183 |
tgggttgaaaaaacgctttctctttacccttccttcaaagaaactattgctactaattataaggccact |
251 |
Q |
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|||||||| |||| ||||||||| | ||||||||||||||||| || | |||| ||||||| |||||| |
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| T |
46469889 |
tgggttgatcaaaccctttctcttcaaccttccttcaaagaaacaatggttactgattataaagccact |
46469957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 251
Target Start/End: Complemental strand, 46550190 - 46550126
Alignment:
| Q |
187 |
ttgaaaaaacgctttctctttacccttccttcaaagaaactattgctactaattataaggccact |
251 |
Q |
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||||| |||| ||||||||| | |||||||| || ||||||| |||||| |||||||||||||| |
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| T |
46550190 |
ttgaacaaaccctttctcttcaaccttcctttgaaaaaactatggctactgattataaggccact |
46550126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 247
Target Start/End: Complemental strand, 9693292 - 9693228
Alignment:
| Q |
183 |
tgggttgaaaaaacgctttctctttacccttccttcaaagaaactattgctactaattataaggc |
247 |
Q |
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||||| || ||||| ||||||||| | ||||||||||||||||| || ||||| |||||||||| |
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| T |
9693292 |
tgggtagagaaaaccctttctcttcaaccttccttcaaagaaaccatgtctactgattataaggc |
9693228 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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