View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18313_high_13 (Length: 381)
Name: NF18313_high_13
Description: NF18313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18313_high_13 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 336; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 13 - 381
Target Start/End: Complemental strand, 52602799 - 52602427
Alignment:
| Q |
13 |
caaaatgatgatagttcatcataaatcatgattctaacaatcctaccacaaatataaatatgcacttaattaccaaattcctcgtagatataatttcatc |
112 |
Q |
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| T |
52602799 |
caaaatgatgatagttcatcataaatcatgattctaacaatcctaccacaaatataaatatgcacttaattaccaaattcctcgtacatataatttcatc |
52602700 |
T |
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| Q |
113 |
aggttgtccatt----attaatttgagaaattatacttccgtaaccatttttatattcaatctccacaccgaataaaaataggagtgatcaggaagaaat |
208 |
Q |
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| T |
52602699 |
aggttgtccattcattattaatttgagaaattatacttccgtaaccatttttatattcaatctccacaccgaataaaaataggagtgatcaggaagaaat |
52602600 |
T |
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| Q |
209 |
atcacgtgagaattatgatggaaaaaaggacgcaaagaataaatgagattagaaattaagtgtaaggttgaaatgttggaatatatactgtcttaattct |
308 |
Q |
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| T |
52602599 |
atcacgtgaggattatgatggaaaaaaggacgcaaagaataaatgagattagaaattaagtgtaaggttgaaatgttggaatatatactgtcttaattct |
52602500 |
T |
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| Q |
309 |
taatattttaagcaaggggtgcatgcaagaacaggcagtatgcagaagttaactccaaacggaatagtattat |
381 |
Q |
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| T |
52602499 |
taatattttaagcaaggggtgcatgcaagaacaggtagtatgcagaagtgaactccaaacggaatggtattat |
52602427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 123 - 381
Target Start/End: Complemental strand, 52623436 - 52623178
Alignment:
| Q |
123 |
ttattaatttgagaaattatacttccgtaaccatttttatattcaatctccacaccgaataaaaataggagtgatcaggaagaaatatcacgtgagaatt |
222 |
Q |
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| T |
52623436 |
ttattaatttgagaaattatacttccgtaaccatttttatattcaatctccacaccgaataaaaataggagtgatcaggaagaaatatcacgtgaggatt |
52623337 |
T |
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| Q |
223 |
atgatggaaaaaaggacgcaaagaataaatgagattagaaattaagtgtaaggttgaaatgttggaatatatactgtcttaattcttaatattttaagca |
322 |
Q |
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| T |
52623336 |
atgatggaaaaaaggacgcaaagaataaatgagattagaaattaattgtaaggttgaaatgttggaatatatactgtcttaattcttaatattttaagca |
52623237 |
T |
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| Q |
323 |
aggggtgcatgcaagaacaggcagtatgcagaagttaactccaaacggaatagtattat |
381 |
Q |
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| T |
52623236 |
aggggtgcatgcaagaacaggtagtatgcagaagtgaactccaaacggaatggtattat |
52623178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 13 - 131
Target Start/End: Complemental strand, 52623797 - 52623679
Alignment:
| Q |
13 |
caaaatgatgatagttcatcataaatcatgattctaacaatcctaccacaaatataaatatgcacttaattaccaaattcctcgtagatataatttcatc |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
52623797 |
caaaatgatgatagttcatcataaatcatgattctaacaatcctaccacaaatataaatatgcacttaattaccaaattcctcgtgcatataatttcatc |
52623698 |
T |
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| Q |
113 |
aggttgtccattattaatt |
131 |
Q |
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||||||||||||||||||| |
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| T |
52623697 |
aggttgtccattattaatt |
52623679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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