View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18313_high_20 (Length: 342)

Name: NF18313_high_20
Description: NF18313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18313_high_20
NF18313_high_20
[»] chr5 (19 HSPs)
chr5 (91-324)||(38700783-38701016)
chr5 (91-321)||(38708457-38708690)
chr5 (10-90)||(3957500-3957586)
chr5 (10-84)||(28075969-28076049)
chr5 (13-90)||(4929509-4929592)
chr5 (10-94)||(8813683-8813773)
chr5 (10-90)||(26688057-26688135)
chr5 (10-90)||(26957788-26957866)
chr5 (10-90)||(33430043-33430128)
chr5 (10-49)||(3739663-3739702)
chr5 (10-49)||(5324403-5324442)
chr5 (10-49)||(21770045-21770084)
chr5 (10-82)||(26687508-26687586)
chr5 (10-82)||(26957239-26957317)
chr5 (10-49)||(42408565-42408604)
chr5 (10-49)||(3739047-3739086)
chr5 (10-49)||(4928918-4928957)
chr5 (10-49)||(13738107-13738146)
chr5 (10-48)||(42408040-42408078)
[»] chr7 (26 HSPs)
chr7 (10-90)||(36682835-36682921)
chr7 (10-84)||(4895082-4895162)
chr7 (10-90)||(27855566-27855651)
chr7 (13-82)||(36620743-36620812)
chr7 (10-49)||(46732614-46732653)
chr7 (10-82)||(24323982-24324059)
chr7 (13-82)||(36683467-36683542)
chr7 (10-49)||(18520904-18520943)
chr7 (10-82)||(19816272-19816350)
chr7 (10-49)||(32499296-32499335)
chr7 (10-49)||(32499872-32499911)
chr7 (10-82)||(34853399-34853477)
chr7 (10-90)||(42455921-42456007)
chr7 (10-49)||(47814018-47814057)
chr7 (10-49)||(47814635-47814674)
chr7 (13-84)||(19816895-19816972)
chr7 (10-82)||(22275433-22275510)
chr7 (10-84)||(33805975-33806055)
chr7 (10-84)||(34853996-34854076)
chr7 (13-82)||(42456519-42456594)
chr7 (10-49)||(4894546-4894585)
chr7 (10-82)||(24044043-24044121)
chr7 (10-49)||(30711835-30711874)
chr7 (13-48)||(46012943-46012978)
chr7 (10-49)||(46815062-46815101)
chr7 (13-84)||(22276079-22276156)
[»] chr4 (39 HSPs)
chr4 (10-90)||(12639965-12640051)
chr4 (10-90)||(31876788-31876874)
chr4 (10-95)||(36944605-36944696)
chr4 (10-90)||(199226-199312)
chr4 (10-90)||(2713843-2713929)
chr4 (10-90)||(20422731-20422817)
chr4 (10-82)||(36945223-36945301)
chr4 (10-90)||(52597711-52597797)
chr4 (10-82)||(35427254-35427331)
chr4 (10-82)||(36111217-36111294)
chr4 (13-90)||(388753-388836)
chr4 (10-82)||(20075533-20075611)
chr4 (10-82)||(25369791-25369869)
chr4 (10-90)||(25370392-25370478)
chr4 (10-90)||(32291015-32291101)
chr4 (10-90)||(40847677-40847763)
chr4 (10-90)||(48091095-48091181)
chr4 (10-90)||(55815825-55815911)
chr4 (10-82)||(55816450-55816528)
chr4 (11-82)||(26423767-26423844)
chr4 (10-89)||(26424404-26424489)
chr4 (10-84)||(37567474-37567554)
chr4 (13-82)||(48782077-48782152)
chr4 (10-82)||(389405-389483)
chr4 (10-49)||(20076186-20076225)
chr4 (10-49)||(28223610-28223649)
chr4 (10-82)||(32902465-32902543)
chr4 (10-82)||(52597498-52597576)
chr4 (11-90)||(33569720-33569805)
chr4 (10-82)||(199007-199085)
chr4 (10-49)||(6862694-6862733)
chr4 (10-49)||(29809087-29809126)
chr4 (10-49)||(32901898-32901937)
chr4 (10-45)||(40848130-40848165)
chr4 (13-47)||(31842726-31842760)
chr4 (11-49)||(48090513-48090551)
chr4 (13-49)||(12640589-12640625)
chr4 (13-49)||(31877435-31877471)
chr4 (13-45)||(40345133-40345165)
[»] chr8 (25 HSPs)
chr8 (10-84)||(35237265-35237345)
chr8 (10-91)||(33114188-33114275)
chr8 (10-90)||(7818474-7818560)
chr8 (10-82)||(11998464-11998542)
chr8 (10-90)||(11999080-11999166)
chr8 (10-90)||(16889195-16889281)
chr8 (10-82)||(36848197-36848275)
chr8 (10-90)||(43480616-43480702)
chr8 (10-72)||(38778172-38778240)
chr8 (10-72)||(40309500-40309568)
chr8 (13-82)||(43481284-43481359)
chr8 (10-45)||(2209057-2209092)
chr8 (10-49)||(4374301-4374340)
chr8 (10-49)||(16879935-16879974)
chr8 (10-49)||(30115414-30115453)
chr8 (10-90)||(39852154-39852240)
chr8 (10-49)||(44062032-44062071)
chr8 (10-80)||(33113585-33113661)
chr8 (10-84)||(43591616-43591696)
chr8 (13-90)||(4374995-4375078)
chr8 (10-71)||(16889828-16889895)
chr8 (10-45)||(7819097-7819132)
chr8 (10-49)||(10805995-10806034)
chr8 (10-45)||(16880518-16880553)
chr8 (10-45)||(40907649-40907684)
[»] scaffold0007 (1 HSPs)
scaffold0007 (10-90)||(11266-11351)
[»] chr6 (11 HSPs)
chr6 (10-82)||(5523208-5523286)
chr6 (10-78)||(30610723-30610797)
chr6 (10-90)||(33668221-33668307)
chr6 (10-90)||(5523846-5523932)
chr6 (10-90)||(30611345-30611431)
chr6 (10-49)||(6032205-6032244)
chr6 (10-49)||(12809702-12809741)
chr6 (10-45)||(6032753-6032788)
chr6 (10-49)||(12809116-12809155)
chr6 (10-48)||(31723881-31723919)
chr6 (13-49)||(33668833-33668869)
[»] chr3 (35 HSPs)
chr3 (10-90)||(3944895-3944981)
chr3 (10-90)||(23584883-23584969)
chr3 (10-90)||(23599706-23599792)
chr3 (10-82)||(31014345-31014423)
chr3 (10-90)||(44868007-44868093)
chr3 (10-82)||(48218599-48218677)
chr3 (10-82)||(29342349-29342427)
chr3 (10-95)||(37374815-37374901)
chr3 (10-51)||(47737673-47737714)
chr3 (10-95)||(19555265-19555356)
chr3 (10-90)||(25025174-25025260)
chr3 (10-49)||(29342993-29343032)
chr3 (10-49)||(31014924-31014963)
chr3 (10-90)||(37373965-37374051)
chr3 (10-49)||(42356283-42356322)
chr3 (10-49)||(43658895-43658934)
chr3 (10-82)||(44868618-44868696)
chr3 (10-82)||(55281843-55281921)
chr3 (10-84)||(50687708-50687788)
chr3 (10-46)||(19555923-19555959)
chr3 (13-49)||(37374609-37374645)
chr3 (10-46)||(49752323-49752359)
chr3 (10-45)||(23584288-23584323)
chr3 (10-45)||(23599111-23599146)
chr3 (10-49)||(32672213-32672252)
chr3 (10-49)||(38575068-38575107)
chr3 (10-49)||(38575642-38575681)
chr3 (10-49)||(40887941-40887980)
chr3 (10-49)||(41875616-41875655)
chr3 (10-49)||(43103946-43103985)
chr3 (10-49)||(55282421-55282460)
chr3 (10-48)||(24220627-24220665)
chr3 (13-84)||(50675128-50675205)
chr3 (16-49)||(50687149-50687182)
chr3 (13-49)||(49752913-49752949)
[»] chr2 (25 HSPs)
chr2 (10-90)||(4386960-4387046)
chr2 (10-90)||(9224266-9224352)
chr2 (10-90)||(20244171-20244257)
chr2 (10-90)||(28223788-28223874)
chr2 (13-84)||(16903092-16903169)
chr2 (10-84)||(16571124-16571204)
chr2 (10-90)||(7716671-7716757)
chr2 (10-82)||(11256124-11256202)
chr2 (10-90)||(11256740-11256826)
chr2 (10-82)||(16887591-16887669)
chr2 (10-82)||(28224388-28224466)
chr2 (10-82)||(39477325-39477403)
chr2 (13-82)||(6849296-6849371)
chr2 (13-90)||(8963504-8963587)
chr2 (10-49)||(3595895-3595934)
chr2 (10-90)||(7583793-7583879)
chr2 (10-82)||(10883295-10883373)
chr2 (10-49)||(30161980-30162019)
chr2 (10-84)||(40165879-40165959)
chr2 (13-49)||(6849545-6849581)
chr2 (10-49)||(467152-467191)
chr2 (10-49)||(3595293-3595332)
chr2 (10-82)||(7583140-7583218)
chr2 (10-82)||(16571726-16571804)
chr2 (10-49)||(20243600-20243639)
[»] chr1 (26 HSPs)
chr1 (10-90)||(8560156-8560242)
chr1 (10-90)||(1403040-1403126)
chr1 (10-90)||(6288204-6288290)
chr1 (10-90)||(49534396-49534482)
chr1 (10-82)||(7219648-7219725)
chr1 (12-84)||(27817006-27817084)
chr1 (10-49)||(48843627-48843666)
chr1 (10-49)||(48843962-48844001)
chr1 (10-49)||(49533790-49533829)
chr1 (10-82)||(8560743-8560820)
chr1 (10-84)||(27797736-27797816)
chr1 (13-79)||(42840316-42840388)
chr1 (10-45)||(1403688-1403723)
chr1 (10-49)||(27797164-27797203)
chr1 (10-49)||(37725426-37725465)
chr1 (10-49)||(41563792-41563831)
chr1 (10-49)||(42839548-42839587)
chr1 (10-49)||(43368835-43368874)
chr1 (10-49)||(48369529-48369568)
chr1 (10-45)||(52859200-52859235)
chr1 (10-49)||(52859788-52859827)
chr1 (10-44)||(6287672-6287706)
chr1 (10-48)||(51247876-51247914)
chr1 (10-84)||(42838943-42839023)
chr1 (10-51)||(43368235-43368276)
chr1 (12-48)||(37725672-37725708)
[»] scaffold1095 (1 HSPs)
scaffold1095 (10-49)||(1532-1571)
[»] scaffold0229 (1 HSPs)
scaffold0229 (10-90)||(15233-15319)
[»] scaffold0039 (1 HSPs)
scaffold0039 (50-90)||(90615-90655)


Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 91 - 324
Target Start/End: Original strand, 38700783 - 38701016
Alignment:
Q  91 gtgaaaaattgtcatgtgtccataccctatctattcttttccaataattgggtttaactcgttttcttgtttactcttccgatggccaatgataaaaaat 190  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||    
T  38700783 gtgaaaaattgtcatgtgtccataccctatctattcttttccaataattgagtttaactagttttcttgtttactcttccgatggccaatgataaaaaat 38700882  T
Q  191 tgttcattttgggttatttacgaaatgacattgttactcttcaacgtgtaatcttatgatgcagcaaaaatatggagtattgttatgaagaaaaagagca 290  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38700883 tgttcattttgggttatttacgaaatgacattgttactcttcaacgtgtaatcttatgatgcagcaaaaatatggagtattgttatgaagaaaaagagca 38700982  T
Q  291 agatctaaattgcgagaagcaaagacgaataccc 324  Q
    |||||||||||| |||||||||||||||||||||    
T  38700983 agatctaaattgtgagaagcaaagacgaataccc 38701016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 91 - 321
Target Start/End: Original strand, 38708457 - 38708690
Alignment:
Q  91 gtgaaaaattgtcatgtgtccataccctatctattcttttccaataattgggtttaactcgttttcttg-tttactcttccgatggccaatgataaaaaa 189  Q
    |||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| ||||||||| |||||||  |||| || ||| ||| ||||     
T  38708457 gtgaaaaattgtcatgtgaccataccctatctattcttttccaatagttgggtttaactagttttcttgttttactc--ccgagggacaacgat-aaaat 38708553  T
Q  190 ttgttcattttgggttatttacgaaatgacattgtta--ctcttcaacgtgtaatcttatgatgcagcaaaa--atatggagta--ttgttatgaagaaa 283  Q
    ||||| |||||||||||||| ||||||||||||||||  ||||||||| |||||||||||||||||||||||  ||||  || |  |||| | |||| ||    
T  38708554 ttgtttattttgggttatttgcgaaatgacattgttactctcttcaacttgtaatcttatgatgcagcaaaattatatccagaaccttgtaaagaag-aa 38708652  T
Q  284 aagagcaagatctaaattgcgagaagcaaagacgaata 321  Q
    |||||||||||||||| || ||||||||||||||||||    
T  38708653 aagagcaagatctaaactgtgagaagcaaagacgaata 38708690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 10 - 90
Target Start/End: Complemental strand, 3957586 - 3957500
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaa------catggtggaaaatgattaacctttctcatgtgaaatcccacc 90  Q
    ||||||||||| |||||||||||||||||||||||||||      |||||||| ||| |||||||||||| |||||||||| |||||    
T  3957586 aagaatatgttcttcacttaatctaatcattgaatccaactttcccatggtgggaaaggattaacctttcccatgtgaaatgccacc 3957500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 10 - 84
Target Start/End: Original strand, 28075969 - 28076049
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaa------catggtggaaaatgattaacctttctcatgtgaaat 84  Q
    |||||||| || |||||||||||||||||||||||||||      ||||||||||||||||||||||||  ||||||||||    
T  28075969 aagaatatatttttcacttaatctaatcattgaatccaactttcccatggtggaaaatgattaaccttttccatgtgaaat 28076049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 13 - 90
Target Start/End: Original strand, 4929509 - 4929592
Alignment:
Q  13 aatatgttattcacttaatctaatcattgaatccaac------atggtggaaaatgattaacctttctcatgtgaaatcccacc 90  Q
    ||||| || ||||||||||||||||||||||||||||      ||||||||||| |||||||||||| |||||||||| |||||    
T  4929509 aatatattcttcacttaatctaatcattgaatccaactttcccatggtggaaaaggattaacctttcccatgtgaaatgccacc 4929592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 10 - 94
Target Start/End: Original strand, 8813683 - 8813773
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaa------catggtggaaaatgattaacctttctcatgtgaaatcccaccgtga 94  Q
    ||||||||||| || ||||||||||||||||||||||||      |||| ||||||| |||||||||||| ||| |||||| |||||||||    
T  8813683 aagaatatgttctttacttaatctaatcattgaatccaactttcccatgatggaaaaggattaacctttcccatatgaaatgccaccgtga 8813773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 10 - 90
Target Start/End: Original strand, 26688057 - 26688135
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaacatggtggaaaatgattaacctttctcatgtgaaatcccacc 90  Q
    ||||||||||| |||||||||| ||||||||||||| |   |||||| ||| |||||||||||| |||||||||| |||||    
T  26688057 aagaatatgttcttcacttaatataatcattgaatcta--gtggtgggaaaggattaacctttcccatgtgaaatgccacc 26688135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 10 - 90
Target Start/End: Original strand, 26957788 - 26957866
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaacatggtggaaaatgattaacctttctcatgtgaaatcccacc 90  Q
    ||||||||||| |||||||||| ||||||||||||| |   |||||| ||| |||||||||||| |||||||||| |||||    
T  26957788 aagaatatgttcttcacttaatataatcattgaatcta--gtggtgggaaaggattaacctttcccatgtgaaatgccacc 26957866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 10 - 90
Target Start/End: Complemental strand, 33430128 - 33430043
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaa-----catggtggaaaatgattaacctttctcatgtgaaatcccacc 90  Q
    ||||||||||| |||||||||||||||||||||||||||     |||||| | ||| |||||||||||  |||||||||| |||||    
T  33430128 aagaatatgttcttcacttaatctaatcattgaatccaactttccatggtaggaaaggattaaccttttccatgtgaaatgccacc 33430043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 49
Target Start/End: Original strand, 3739663 - 3739702
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaac 49  Q
    ||||||||||| ||||||||||||||||||||||||||||    
T  3739663 aagaatatgttcttcacttaatctaatcattgaatccaac 3739702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 49
Target Start/End: Original strand, 5324403 - 5324442
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaac 49  Q
    ||||||||||| ||||||||||||||||||||||||||||    
T  5324403 aagaatatgttcttcacttaatctaatcattgaatccaac 5324442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 49
Target Start/End: Complemental strand, 21770084 - 21770045
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaac 49  Q
    ||||||||||| ||||||||||||||||||||||||||||    
T  21770084 aagaatatgttcttcacttaatctaatcattgaatccaac 21770045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 82
Target Start/End: Complemental strand, 26687586 - 26687508
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaa------catggtggaaaatgattaacctttctcatgtgaa 82  Q
    ||||||||||| |||||||||||||||||||||||| ||      |||||| ||||| |||||||||||| ||||||||    
T  26687586 aagaatatgttcttcacttaatctaatcattgaatctaactttcccatggtagaaaaggattaacctttcccatgtgaa 26687508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 82
Target Start/End: Complemental strand, 26957317 - 26957239
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaa------catggtggaaaatgattaacctttctcatgtgaa 82  Q
    ||||||||||| |||||||||||||||||||||||| ||      |||||| ||||| |||||||||||| ||||||||    
T  26957317 aagaatatgttcttcacttaatctaatcattgaatctaactttcccatggtagaaaaggattaacctttcccatgtgaa 26957239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 49
Target Start/End: Original strand, 42408565 - 42408604
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaac 49  Q
    ||||||||||| ||||||||||||||||||||||||||||    
T  42408565 aagaatatgttcttcacttaatctaatcattgaatccaac 42408604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 10 - 49
Target Start/End: Complemental strand, 3739086 - 3739047
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaac 49  Q
    |||||||| || ||||||||||||||||||||||||||||    
T  3739086 aagaatatatttttcacttaatctaatcattgaatccaac 3739047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 10 - 49
Target Start/End: Complemental strand, 4928957 - 4928918
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaac 49  Q
    ||||||||||| ||||||||||||||||||| ||||||||    
T  4928957 aagaatatgttcttcacttaatctaatcattaaatccaac 4928918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 10 - 49
Target Start/End: Complemental strand, 13738146 - 13738107
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaac 49  Q
    ||||||||||| ||||||||||| ||||||||||||||||    
T  13738146 aagaatatgttcttcacttaatccaatcattgaatccaac 13738107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 48
Target Start/End: Complemental strand, 42408078 - 42408040
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaa 48  Q
    ||||||||||| |||| ||||||||||||||||||||||    
T  42408078 aagaatatgttcttcatttaatctaatcattgaatccaa 42408040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 10 - 90
Target Start/End: Complemental strand, 36682921 - 36682835
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaa------catggtggaaaatgattaacctttctcatgtgaaatcccacc 90  Q
    ||||||||||| |||||||||||||||||||||||||||      |||||||| |||||||||||||||| |||||||||| |||||    
T  36682921 aagaatatgttcttcacttaatctaatcattgaatccaactttcccatggtgggaaatgattaacctttcccatgtgaaatgccacc 36682835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 10 - 84
Target Start/End: Original strand, 4895082 - 4895162
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaa------catggtggaaaatgattaacctttctcatgtgaaat 84  Q
    ||||||||||| ||||||||||||||| |||||||||||      ||||||||||||||||||||||||| ||||||||||    
T  4895082 aagaatatgttcttcacttaatctaataattgaatccaactttcccatggtggaaaatgattaacctttcccatgtgaaat 4895162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 10 - 90
Target Start/End: Complemental strand, 27855651 - 27855566
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatcca-----acatggtggaaaatgattaacctttctcatgtgaaatcccacc 90  Q
    ||||||||||| |||||||||||||||||||||||| |      |||||||| |||||||||||||||| |||||||||| |||||    
T  27855651 aagaatatgttcttcacttaatctaatcattgaatcaactttctcatggtgggaaatgattaacctttcccatgtgaaatgccacc 27855566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 13 - 82
Target Start/End: Original strand, 36620743 - 36620812
Alignment:
Q  13 aatatgttattcacttaatctaatcattgaatccaacatggtggaaaatgattaacctttctcatgtgaa 82  Q
    |||||||| ||||||||||||||||||||||||||||    |||||||||||||||||||  ||||||||    
T  36620743 aatatgttcttcacttaatctaatcattgaatccaactccatggaaaatgattaaccttttccatgtgaa 36620812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 10 - 49
Target Start/End: Complemental strand, 46732653 - 46732614
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaac 49  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  46732653 aagaatatgttattcacttaatctaatcattgaatccaac 46732614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 10 - 82
Target Start/End: Original strand, 24323982 - 24324059
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaa-----catggtggaaaatgattaacctttctcatgtgaa 82  Q
    ||||||||||| ||||||||||||||| |||||||||||     ||| |||| |||||||||||||||| ||||||||    
T  24323982 aagaatatgttcttcacttaatctaattattgaatccaatttcccatagtgggaaatgattaacctttcccatgtgaa 24324059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 13 - 82
Target Start/End: Original strand, 36683467 - 36683542
Alignment:
Q  13 aatatgttattcacttaatctaatcattgaatccaa------catggtggaaaatgattaacctttctcatgtgaa 82  Q
    |||||||| |||||||||||||||||||||||||||      |||||||| ||| |||||||||||| ||||||||    
T  36683467 aatatgttcttcacttaatctaatcattgaatccaactttcccatggtgggaaaggattaacctttcccatgtgaa 36683542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 49
Target Start/End: Complemental strand, 18520943 - 18520904
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaac 49  Q
    ||||||||||| ||||||||||||||||||||||||||||    
T  18520943 aagaatatgttcttcacttaatctaatcattgaatccaac 18520904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 82
Target Start/End: Complemental strand, 19816350 - 19816272
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaa------catggtggaaaatgattaacctttctcatgtgaa 82  Q
    ||||||||||| | |||||||||||||||||||||||||      |||||||| ||| |||||||||||| ||||||||    
T  19816350 aagaatatgttttacacttaatctaatcattgaatccaactttcccatggtgggaaaggattaacctttcccatgtgaa 19816272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 49
Target Start/End: Complemental strand, 32499335 - 32499296
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaac 49  Q
    ||||||||||| ||||||||||||||||||||||||||||    
T  32499335 aagaatatgttcttcacttaatctaatcattgaatccaac 32499296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 49
Target Start/End: Original strand, 32499872 - 32499911
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaac 49  Q
    ||||||||||| ||||||||||||||||||||||||||||    
T  32499872 aagaatatgttcttcacttaatctaatcattgaatccaac 32499911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 82
Target Start/End: Complemental strand, 34853477 - 34853399
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaa------catggtggaaaatgattaacctttctcatgtgaa 82  Q
    ||||||||||| ||||||||||||||||||||||| |||      |||||||| ||| |||||||||||| ||||||||    
T  34853477 aagaatatgttcttcacttaatctaatcattgaattcaactttcccatggtgggaaaggattaacctttcccatgtgaa 34853399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 90
Target Start/End: Complemental strand, 42456007 - 42455921
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaa------catggtggaaaatgattaacctttctcatgtgaaatcccacc 90  Q
    ||||||||||| |||||||||| ||||||||||||||||      | |||||| ||| |||||||||||| |||||||||| |||||    
T  42456007 aagaatatgttcttcacttaatttaatcattgaatccaattttcccgtggtgggaaaggattaacctttcccatgtgaaatgccacc 42455921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 49
Target Start/End: Complemental strand, 47814057 - 47814018
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaac 49  Q
    ||||||||||| ||||||||||||||||||||||||||||    
T  47814057 aagaatatgttcttcacttaatctaatcattgaatccaac 47814018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 49
Target Start/End: Original strand, 47814635 - 47814674
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaac 49  Q
    ||||||||||| ||||||||||||||||||||||||||||    
T  47814635 aagaatatgttcttcacttaatctaatcattgaatccaac 47814674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 84
Target Start/End: Original strand, 19816895 - 19816972
Alignment:
Q  13 aatatgttattcacttaatctaatcattgaatccaa------catggtggaaaatgattaacctttctcatgtgaaat 84  Q
    |||||||| ||||||||||||||||||| |||||||      |||||||||||| |||||||||||| ||| ||||||    
T  19816895 aatatgttcttcacttaatctaatcatttaatccaactttcccatggtggaaaaggattaacctttcccatatgaaat 19816972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 10 - 82
Target Start/End: Complemental strand, 22275510 - 22275433
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatcca-----acatggtggaaaatgattaacctttctcatgtgaa 82  Q
    ||||||||||| |||||||||||||||||||||||| |      |||||||| |||||||||||||||  ||||||||    
T  22275510 aagaatatgttcttcacttaatctaatcattgaatcaactttcccatggtgggaaatgattaaccttttccatgtgaa 22275433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 10 - 84
Target Start/End: Complemental strand, 33806055 - 33805975
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaa------catggtggaaaatgattaacctttctcatgtgaaat 84  Q
    ||||||||||| |||||||||| ||||||||||||||||      |||||||||||||||||   ||||| ||||||||||    
T  33806055 aagaatatgttcttcacttaatttaatcattgaatccaacttttccatggtggaaaatgattggtctttcccatgtgaaat 33805975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 10 - 84
Target Start/End: Original strand, 34853996 - 34854076
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaac------atggtggaaaatgattaacctttctcatgtgaaat 84  Q
    ||||||||||| ||||||||||||||||||||| || |||      ||||||| ||| |||||||||||| ||||||||||    
T  34853996 aagaatatgttcttcacttaatctaatcattgactctaactttcctatggtgggaaaggattaacctttcccatgtgaaat 34854076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 82
Target Start/End: Original strand, 42456519 - 42456594
Alignment:
Q  13 aatatgttattcacttaatctaatcattgaatccaa------catggtggaaaatgattaacctttctcatgtgaa 82  Q
    |||||||| |||||||||| ||||||||||||||||      |||||||| ||| |||||||||||| ||||||||    
T  42456519 aatatgttcttcacttaatgtaatcattgaatccaactttcccatggtgggaaaggattaacctttcccatgtgaa 42456594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 10 - 49
Target Start/End: Complemental strand, 4894585 - 4894546
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaac 49  Q
    ||||||||||| ||||||||||||||||||||||| ||||    
T  4894585 aagaatatgttcttcacttaatctaatcattgaattcaac 4894546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 10 - 82
Target Start/End: Original strand, 24044043 - 24044121
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaa------catggtggaaaatgattaacctttctcatgtgaa 82  Q
    ||||||||||| |||||||||||||||||||||||  ||      |||||||| ||| |||||||||||| ||||||||    
T  24044043 aagaatatgttcttcacttaatctaatcattgaataaaactttcccatggtgggaaaggattaacctttcccatgtgaa 24044121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 10 - 49
Target Start/End: Complemental strand, 30711874 - 30711835
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaac 49  Q
    ||||||||||| ||||||||||||||| ||||||||||||    
T  30711874 aagaatatgttcttcacttaatctaataattgaatccaac 30711835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 13 - 48
Target Start/End: Original strand, 46012943 - 46012978
Alignment:
Q  13 aatatgttattcacttaatctaatcattgaatccaa 48  Q
    |||||||| |||||||||||||||||||||||||||    
T  46012943 aatatgttcttcacttaatctaatcattgaatccaa 46012978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 10 - 49
Target Start/End: Original strand, 46815062 - 46815101
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaac 49  Q
    ||||||||||| |||| |||||||||||||||||||||||    
T  46815062 aagaatatgttcttcatttaatctaatcattgaatccaac 46815101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 84
Target Start/End: Original strand, 22276079 - 22276156
Alignment:
Q  13 aatatgttattcacttaatctaatcattgaatccaa------catggtggaaaatgattaacctttctcatgtgaaat 84  Q
    |||||||| |||| ||||||||||||||||||||||      |||||||| ||| |||||||||||| ||||| ||||    
T  22276079 aatatgttcttcatttaatctaatcattgaatccaactttcccatggtgggaaaggattaacctttcccatgtaaaat 22276156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 39)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 10 - 90
Target Start/End: Complemental strand, 12640051 - 12639965
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaa------catggtggaaaatgattaacctttctcatgtgaaatcccacc 90  Q
    ||||||||||| |||||||||||||||||||||||||||      |||||||||||| |||||||||||| |||||||||| |||||    
T  12640051 aagaatatgttcttcacttaatctaatcattgaatccaactttcccatggtggaaaaggattaacctttcccatgtgaaatgccacc 12639965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 10 - 90
Target Start/End: Complemental strand, 31876874 - 31876788
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaa------catggtggaaaatgattaacctttctcatgtgaaatcccacc 90  Q
    ||||||||||| |||||||||||||||||||||||||||      |||||||||||| |||||||||||| |||||||||| |||||    
T  31876874 aagaatatgttcttcacttaatctaatcattgaatccaacttttccatggtggaaaaggattaacctttcccatgtgaaatgccacc 31876788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 10 - 95
Target Start/End: Complemental strand, 36944696 - 36944605
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaa------catggtggaaaatgattaacctttctcatgtgaaatcccaccgtgaa 95  Q
    ||||||||||| |||||||||||||||||||||||||||      |||||||||||| |||||||||||| | |||||||| ||||| ||||    
T  36944696 aagaatatgttcttcacttaatctaatcattgaatccaacttttccatggtggaaaaagattaacctttcacgtgtgaaatgccaccttgaa 36944605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 10 - 90
Target Start/End: Original strand, 199226 - 199312
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaa------catggtggaaaatgattaacctttctcatgtgaaatcccacc 90  Q
    ||||||||||| |||||||||||||||||||||||||||      |||||||| ||| |||||||||||| |||||||||| |||||    
T  199226 aagaatatgttcttcacttaatctaatcattgaatccaactttcccatggtgggaaaggattaacctttcccatgtgaaatgccacc 199312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 10 - 90
Target Start/End: Original strand, 2713843 - 2713929
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaa------catggtggaaaatgattaacctttctcatgtgaaatcccacc 90  Q
    ||||||||||| |||||||||||||||||||||||||||      |||||||| ||| |||||||||||| |||||||||| |||||    
T  2713843 aagaatatgttcttcacttaatctaatcattgaatccaacttttccatggtgggaaaggattaacctttcccatgtgaaatgccacc 2713929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 10 - 90
Target Start/End: Original strand, 20422731 - 20422817
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaa------catggtggaaaatgattaacctttctcatgtgaaatcccacc 90  Q
    ||||||||||| |||||||||||||||||||||||||||      |||||||||||| |||||| ||||| |||||||||| |||||    
T  20422731 aagaatatgttcttcacttaatctaatcattgaatccaacttttccatggtggaaaaggattaagctttcccatgtgaaatgccacc 20422817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 10 - 82
Target Start/End: Original strand, 36945223 - 36945301
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaa------catggtggaaaatgattaacctttctcatgtgaa 82  Q
    ||||||||||| |||||||||||||||||||||||||||      |||||||||||| |||||||||||| ||||||||    
T  36945223 aagaatatgttcttcacttaatctaatcattgaatccaactttcccatggtggaaaaggattaacctttcccatgtgaa 36945301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 10 - 90
Target Start/End: Original strand, 52597711 - 52597797
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaac------atggtggaaaatgattaacctttctcatgtgaaatcccacc 90  Q
    ||||||||||| ||||||||||||||||||||||||||||      |||||| |||| |||||||||||| |||||||||| |||||    
T  52597711 aagaatatgttcttcacttaatctaatcattgaatccaactttcctatggtgaaaaaggattaacctttcccatgtgaaatgccacc 52597797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 10 - 82
Target Start/End: Complemental strand, 35427331 - 35427254
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaa-----catggtggaaaatgattaacctttctcatgtgaa 82  Q
    ||||||||||| |||||||||||||||||||||||||||     ||||| |||||| |||||||||||| ||||||||    
T  35427331 aagaatatgttcttcacttaatctaatcattgaatccaatttcccatggcggaaaaggattaacctttcccatgtgaa 35427254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 10 - 82
Target Start/End: Original strand, 36111217 - 36111294
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaa-----catggtggaaaatgattaacctttctcatgtgaa 82  Q
    ||||||||||| |||||||||||||||||||||||||||     |||||||| ||| |||||||||||| ||||||||    
T  36111217 aagaatatgttcttcacttaatctaatcattgaatccaatttcccatggtgggaaaggattaacctttcccatgtgaa 36111294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 13 - 90
Target Start/End: Complemental strand, 388836 - 388753
Alignment:
Q  13 aatatgttattcacttaatctaatcattgaatccaa------catggtggaaaatgattaacctttctcatgtgaaatcccacc 90  Q
    |||||||| |||||||||||||||||||||||||||      |||||||| ||| |||||||||||| |||||||||| |||||    
T  388836 aatatgtttttcacttaatctaatcattgaatccaactttcccatggtgggaaaggattaacctttcccatgtgaaatgccacc 388753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 10 - 82
Target Start/End: Complemental strand, 20075611 - 20075533
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaa------catggtggaaaatgattaacctttctcatgtgaa 82  Q
    ||||||||||| |||||||||||||||||||||||||||      |||||||| ||| |||||||||||| ||||||||    
T  20075611 aagaatatgttcttcacttaatctaatcattgaatccaactttcccatggtgggaaaggattaacctttcccatgtgaa 20075533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 10 - 82
Target Start/End: Complemental strand, 25369869 - 25369791
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaa------catggtggaaaatgattaacctttctcatgtgaa 82  Q
    ||||||||||| |||||||||||||||||||||||||||      ||| |||||||| |||||||||||| ||||||||    
T  25369869 aagaatatgttcttcacttaatctaatcattgaatccaactttcccatagtggaaaaggattaacctttcccatgtgaa 25369791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 10 - 90
Target Start/End: Original strand, 25370392 - 25370478
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaa------catggtggaaaatgattaacctttctcatgtgaaatcccacc 90  Q
    ||||||||||| |||||||||||||||||||||||||||      |||||||| ||| |||||||||||| ||||| |||| |||||    
T  25370392 aagaatatgttcttcacttaatctaatcattgaatccaactttcccatggtgggaaaggattaacctttcccatgtaaaatgccacc 25370478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 10 - 90
Target Start/End: Complemental strand, 32291101 - 32291015
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaa------catggtggaaaatgattaacctttctcatgtgaaatcccacc 90  Q
    ||||||||||| |||||||||||||||||||||||||||      |||| | | |||||||||||||||| |||||||||| |||||    
T  32291101 aagaatatgttcttcacttaatctaatcattgaatccaactttcccatgattggaaatgattaacctttcccatgtgaaatgccacc 32291015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 10 - 90
Target Start/End: Complemental strand, 40847763 - 40847677
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaa------catggtggaaaatgattaacctttctcatgtgaaatcccacc 90  Q
    ||||||||||| |||||||||||||||||||||||||||      |||||||| ||| |||||||||||  |||||||||| |||||    
T  40847763 aagaatatgttcttcacttaatctaatcattgaatccaactttctcatggtgggaaaggattaaccttttccatgtgaaatgccacc 40847677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 10 - 90
Target Start/End: Original strand, 48091095 - 48091181
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaa------catggtggaaaatgattaacctttctcatgtgaaatcccacc 90  Q
    ||||||||||| |||||||||||||||||||||||||||      |||||||| ||| |||||||||||| ||| |||||| |||||    
T  48091095 aagaatatgttcttcacttaatctaatcattgaatccaactttcccatggtgggaaaagattaacctttcccatatgaaatgccacc 48091181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 10 - 90
Target Start/End: Complemental strand, 55815911 - 55815825
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaa------catggtggaaaatgattaacctttctcatgtgaaatcccacc 90  Q
    ||||||||||| |||||||||||||||||||||||||||      ||| |||| ||| |||||||||||| |||||||||| |||||    
T  55815911 aagaatatgttcttcacttaatctaatcattgaatccaactttcccatagtgggaaaggattaacctttcccatgtgaaatgccacc 55815825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 10 - 82
Target Start/End: Original strand, 55816450 - 55816528
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaa------catggtggaaaatgattaacctttctcatgtgaa 82  Q
    ||||||||||| |||||||||||||||||||||||||||      |||||||| ||| |||||||||||| ||||||||    
T  55816450 aagaatatgttcttcacttaatctaatcattgaatccaactttcccatggtgggaaaggattaacctttcccatgtgaa 55816528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 26423844 - 26423767
Alignment:
Q  11 agaatatgttattcacttaatctaatcattgaatccaa------catggtggaaaatgattaacctttctcatgtgaa 82  Q
    |||||||||| |||||||||||||||||||||||||||      |||||||| ||| |||||||||||| ||||||||    
T  26423844 agaatatgttcttcacttaatctaatcattgaatccaactttttcatggtgggaaaggattaacctttcccatgtgaa 26423767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 10 - 89
Target Start/End: Original strand, 26424404 - 26424489
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaa------catggtggaaaatgattaacctttctcatgtgaaatcccac 89  Q
    ||||||||||| |||||||||||||||||||||||||||      ||||||||||||  | ||||||||| |||||||||| ||||    
T  26424404 aagaatatgttcttcacttaatctaatcattgaatccaactttcccatggtggaaaagaactaacctttcccatgtgaaatgccac 26424489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 10 - 84
Target Start/End: Original strand, 37567474 - 37567554
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaa------catggtggaaaatgattaacctttctcatgtgaaat 84  Q
    ||||||||||| || ||||||||||||||||||||||||      ||||||||||||  ||||||||||| ||||||||||    
T  37567474 aagaatatgttctttacttaatctaatcattgaatccaactttcccatggtggaaaagtattaacctttcccatgtgaaat 37567554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 13 - 82
Target Start/End: Original strand, 48782077 - 48782152
Alignment:
Q  13 aatatgttattcacttaatctaatcattgaatccaa------catggtggaaaatgattaacctttctcatgtgaa 82  Q
    |||||||| |||||||||||||||||||||||||||      |||||||  |||||||||||||||| ||||||||    
T  48782077 aatatgttcttcacttaatctaatcattgaatccaactttcccatggtgcgaaatgattaacctttcccatgtgaa 48782152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 82
Target Start/End: Original strand, 389405 - 389483
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaa------catggtggaaaatgattaacctttctcatgtgaa 82  Q
    ||||||||||| ||||||||||||||||| |||||||||      |||||||| ||| |||||||||||| ||||||||    
T  389405 aagaatatgttcttcacttaatctaatcactgaatccaacttttccatggtgggaaaggattaacctttcccatgtgaa 389483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 49
Target Start/End: Original strand, 20076186 - 20076225
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaac 49  Q
    ||||||||||| ||||||||||||||||||||||||||||    
T  20076186 aagaatatgttcttcacttaatctaatcattgaatccaac 20076225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 49
Target Start/End: Complemental strand, 28223649 - 28223610
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaac 49  Q
    ||||||||||| ||||||||||||||||||||||||||||    
T  28223649 aagaatatgttcttcacttaatctaatcattgaatccaac 28223610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 82
Target Start/End: Original strand, 32902465 - 32902543
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaa------catggtggaaaatgattaacctttctcatgtgaa 82  Q
    ||||||||||| ||||||||||||||||||||||| |||      |||||||| |||  ||||||||||||||||||||    
T  32902465 aagaatatgttcttcacttaatctaatcattgaattcaactttcccatggtgggaaaatattaacctttctcatgtgaa 32902543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 82
Target Start/End: Complemental strand, 52597576 - 52597498
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaa------catggtggaaaatgattaacctttctcatgtgaa 82  Q
    ||||||||||| |||||||||||||||||||||||| ||      |||||||| ||| |||||||||||| ||||||||    
T  52597576 aagaatatgttcttcacttaatctaatcattgaatctaactttcccatggtgggaaaagattaacctttcccatgtgaa 52597498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 90
Target Start/End: Complemental strand, 33569805 - 33569720
Alignment:
Q  11 agaatatgttattcacttaatctaatcattgaatccaa------catggtggaaaatgattaacctttctcatgtgaaatcccacc 90  Q
    |||||||||| ||||||||||||||| |||||||||||      |||||||| ||| |||| ||||||| |||||||||| |||||    
T  33569805 agaatatgttcttcacttaatctaattattgaatccaacttttccatggtgggaaaggattgacctttcccatgtgaaatgccacc 33569720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 10 - 82
Target Start/End: Complemental strand, 199085 - 199007
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaa------catggtggaaaatgattaacctttctcatgtgaa 82  Q
    ||||||||||| |||||||||||||||||||||||  ||      |||||||| ||| |||||||||||| ||||||||    
T  199085 aagaatatgttcttcacttaatctaatcattgaatttaactttcccatggtgggaaaggattaacctttcccatgtgaa 199007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 10 - 49
Target Start/End: Complemental strand, 6862733 - 6862694
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaac 49  Q
    ||||||||||| |||||||||||||||| |||||||||||    
T  6862733 aagaatatgttcttcacttaatctaatctttgaatccaac 6862694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 10 - 49
Target Start/End: Original strand, 29809087 - 29809126
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaac 49  Q
    ||||||||||| ||||||||||||||||||||||| ||||    
T  29809087 aagaatatgttcttcacttaatctaatcattgaattcaac 29809126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 10 - 49
Target Start/End: Complemental strand, 32901937 - 32901898
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaac 49  Q
    ||||||||||| || |||||||||||||||||||||||||    
T  32901937 aagaatatgttctttacttaatctaatcattgaatccaac 32901898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 10 - 45
Target Start/End: Original strand, 40848130 - 40848165
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatc 45  Q
    ||||||||||| ||||||||||||||||||||||||    
T  40848130 aagaatatgttcttcacttaatctaatcattgaatc 40848165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 47
Target Start/End: Original strand, 31842726 - 31842760
Alignment:
Q  13 aatatgttattcacttaatctaatcattgaatcca 47  Q
    |||||||| ||||||||||||||||||||||||||    
T  31842726 aatatgttcttcacttaatctaatcattgaatcca 31842760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 49
Target Start/End: Complemental strand, 48090551 - 48090513
Alignment:
Q  11 agaatatgttattcacttaatctaatcattgaatccaac 49  Q
    |||||||||| | ||||||||||||||||||||||||||    
T  48090551 agaatatgttctacacttaatctaatcattgaatccaac 48090513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 49
Target Start/End: Original strand, 12640589 - 12640625
Alignment:
Q  13 aatatgttattcacttaatctaatcattgaatccaac 49  Q
    |||||||| ||| ||||||||||||||||||||||||    
T  12640589 aatatgttcttcgcttaatctaatcattgaatccaac 12640625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 49
Target Start/End: Original strand, 31877435 - 31877471
Alignment:
Q  13 aatatgttattcacttaatctaatcattgaatccaac 49  Q
    |||||||| ||||||||||||||||||| ||||||||    
T  31877435 aatatgttcttcacttaatctaatcattaaatccaac 31877471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 45
Target Start/End: Original strand, 40345133 - 40345165
Alignment:
Q  13 aatatgttattcacttaatctaatcattgaatc 45  Q
    |||||||| ||||||||||||||||||||||||    
T  40345133 aatatgttcttcacttaatctaatcattgaatc 40345165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 10 - 84
Target Start/End: Complemental strand, 35237345 - 35237265
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaa------catggtggaaaatgattaacctttctcatgtgaaat 84  Q
    |||||||||||||||||||||||||||||||||||||||      |||||||| ||| |||||||||||| ||||||||||    
T  35237345 aagaatatgttattcacttaatctaatcattgaatccaactttcccatggtgggaaaggattaacctttcccatgtgaaat 35237265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 10 - 91
Target Start/End: Original strand, 33114188 - 33114275
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaa------catggtggaaaatgattaacctttctcatgtgaaatcccaccg 91  Q
    ||||||||||| |||||||||||||||||||||||||||      |||||||| ||| |||||||||||| |||||||||| ||||||    
T  33114188 aagaatatgttcttcacttaatctaatcattgaatccaactttcccatggtgggaaaggattaacctttcccatgtgaaatgccaccg 33114275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 10 - 90
Target Start/End: Complemental strand, 7818560 - 7818474
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaa------catggtggaaaatgattaacctttctcatgtgaaatcccacc 90  Q
    ||||||||||| |||||||||||||||||||||||||||      |||||||| ||| |||||||||||| |||||||||| |||||    
T  7818560 aagaatatgttcttcacttaatctaatcattgaatccaactttcccatggtgggaaaggattaacctttcccatgtgaaatgccacc 7818474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 10 - 82
Target Start/End: Complemental strand, 11998542 - 11998464
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaa------catggtggaaaatgattaacctttctcatgtgaa 82  Q
    ||||||||||| |||||||||||||||||||||||||||      |||||||| |||||||||||||||| ||||||||    
T  11998542 aagaatatgttcttcacttaatctaatcattgaatccaactttcccatggtgggaaatgattaacctttcccatgtgaa 11998464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 10 - 90
Target Start/End: Original strand, 11999080 - 11999166
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaa------catggtggaaaatgattaacctttctcatgtgaaatcccacc 90  Q
    ||||||||||| ||||||| |||||||||||||||||||      |||||||| |||||||||||||||| |||||||||| |||||    
T  11999080 aagaatatgttcttcacttcatctaatcattgaatccaactttcccatggtgggaaatgattaacctttcccatgtgaaatgccacc 11999166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 10 - 90
Target Start/End: Complemental strand, 16889281 - 16889195
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaa------catggtggaaaatgattaacctttctcatgtgaaatcccacc 90  Q
    ||||||||||| |||||||||||||||||||||||||||      |||||||| ||| |||||||||||| |||||||||| |||||    
T  16889281 aagaatatgttcttcacttaatctaatcattgaatccaactttcccatggtgggaaaagattaacctttcccatgtgaaatgccacc 16889195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 10 - 82
Target Start/End: Original strand, 36848197 - 36848275
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaa------catggtggaaaatgattaacctttctcatgtgaa 82  Q
    ||||||||||| |||||||||||||||||||||||||||      |||||||||||| |||||| ||||| ||||||||    
T  36848197 aagaatatgttcttcacttaatctaatcattgaatccaacttttccatggtggaaaaggattaagctttcccatgtgaa 36848275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 10 - 90
Target Start/End: Complemental strand, 43480702 - 43480616
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaa------catggtggaaaatgattaacctttctcatgtgaaatcccacc 90  Q
    ||||||||||| ||||||||||||||||||| |||||||      ||||||| |||| |||||||||||| |||||||||| |||||    
T  43480702 aagaatatgttcttcacttaatctaatcatttaatccaactttcccatggtgtaaaaagattaacctttcccatgtgaaatgccacc 43480616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 10 - 72
Target Start/End: Complemental strand, 38778240 - 38778172
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaa------catggtggaaaatgattaaccttt 72  Q
    ||||||||||| |||||||||||||||||||||||||||      |||||||| |||||||||||||||    
T  38778240 aagaatatgttcttcacttaatctaatcattgaatccaactttcccatggtgggaaatgattaaccttt 38778172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 10 - 72
Target Start/End: Original strand, 40309500 - 40309568
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaac------atggtggaaaatgattaaccttt 72  Q
    ||||||||||| ||||||||||||||||||||||||||||      ||||||| |||||||||||||||    
T  40309500 aagaatatgttcttcacttaatctaatcattgaatccaactttcctatggtgggaaatgattaaccttt 40309568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 13 - 82
Target Start/End: Original strand, 43481284 - 43481359
Alignment:
Q  13 aatatgttattcacttaatctaatcattgaatccaa------catggtggaaaatgattaacctttctcatgtgaa 82  Q
    |||||||| |||||||||||||||||||||||||||      |||||||| ||| ||||||||||| |||||||||    
T  43481284 aatatgttcttcacttaatctaatcattgaatccaactttcccatggtgggaaaggattaacctttttcatgtgaa 43481359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 45
Target Start/End: Complemental strand, 2209092 - 2209057
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatc 45  Q
    ||||||||||||||||||||||||||||||||||||    
T  2209092 aagaatatgttattcacttaatctaatcattgaatc 2209057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 49
Target Start/End: Original strand, 4374301 - 4374340
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaac 49  Q
    ||||||||||| ||||||||||||||||||||||||||||    
T  4374301 aagaatatgttcttcacttaatctaatcattgaatccaac 4374340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 49
Target Start/End: Complemental strand, 16879974 - 16879935
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaac 49  Q
    ||||||||||| ||||||||||||||||||||||||||||    
T  16879974 aagaatatgttcttcacttaatctaatcattgaatccaac 16879935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 49
Target Start/End: Complemental strand, 30115453 - 30115414
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaac 49  Q
    ||||||||||| ||||||||||||||||||||||||||||    
T  30115453 aagaatatgttcttcacttaatctaatcattgaatccaac 30115414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 90
Target Start/End: Complemental strand, 39852240 - 39852154
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaa------catggtggaaaatgattaacctttctcatgtgaaatcccacc 90  Q
    ||||||||||| |||||||||||||||||||||||| ||      |||||||| ||| |||||||||||| ||| |||||| |||||    
T  39852240 aagaatatgttcttcacttaatctaatcattgaatcaaactttcccatggtgggaaaggattaacctttcccatttgaaatgccacc 39852154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 49
Target Start/End: Complemental strand, 44062071 - 44062032
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaac 49  Q
    ||||||||||| ||||||||||||||||||||||||||||    
T  44062071 aagaatatgttcttcacttaatctaatcattgaatccaac 44062032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 10 - 80
Target Start/End: Complemental strand, 33113661 - 33113585
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaa------catggtggaaaatgattaacctttctcatgtg 80  Q
    |||||||| || |||||||||||||||||||||||||||      |||||||| |||||||||| ||||| ||||||    
T  33113661 aagaatatattcttcacttaatctaatcattgaatccaactttcccatggtgggaaatgattaatctttcccatgtg 33113585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 10 - 84
Target Start/End: Original strand, 43591616 - 43591696
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaa------catggtggaaaatgattaacctttctcatgtgaaat 84  Q
    ||||||||||| ||||||||||||||||||||| || ||      |||||||| |||| ||||||||||| ||||||||||    
T  43591616 aagaatatgttcttcacttaatctaatcattgactctaactttcccatggtgggaaataattaacctttcccatgtgaaat 43591696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 90
Target Start/End: Original strand, 4374995 - 4375078
Alignment:
Q  13 aatatgttattcacttaatctaatcattgaatccaa------catggtggaaaatgattaacctttctcatgtgaaatcccacc 90  Q
    |||||||| ||||||||||| |||||||||||||||      ||||||||||||||||| | ||||| ||| |||||| |||||    
T  4374995 aatatgttcttcacttaatccaatcattgaatccaactttctcatggtggaaaatgattcatctttcccatatgaaatgccacc 4375078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 71
Target Start/End: Original strand, 16889828 - 16889895
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaa------catggtggaaaatgattaacctt 71  Q
    ||||||||||| ||||||||||||||| |||||||||||      |||||||| ||||||||||||||    
T  16889828 aagaatatgttcttcacttaatctaataattgaatccaactttcccatggtgggaaatgattaacctt 16889895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 10 - 45
Target Start/End: Original strand, 7819097 - 7819132
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatc 45  Q
    ||||||||||| ||||||||||||||||||||||||    
T  7819097 aagaatatgttcttcacttaatctaatcattgaatc 7819132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 10 - 49
Target Start/End: Complemental strand, 10806034 - 10805995
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaac 49  Q
    ||||||||||| |||| |||||||||||||||||||||||    
T  10806034 aagaatatgttcttcatttaatctaatcattgaatccaac 10805995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 10 - 45
Target Start/End: Original strand, 16880518 - 16880553
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatc 45  Q
    ||||||||||| ||||||||||||||||||||||||    
T  16880518 aagaatatgttcttcacttaatctaatcattgaatc 16880553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 10 - 45
Target Start/End: Complemental strand, 40907684 - 40907649
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatc 45  Q
    ||||||||||| ||||||||||||||||||||||||    
T  40907684 aagaatatgttcttcacttaatctaatcattgaatc 40907649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 10 - 90
Target Start/End: Complemental strand, 11351 - 11266
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaa------catggtggaaaatgattaacctttctcatgtgaaatcccacc 90  Q
    ||||||||||| |||||||||||||||||||||||||||      |||||||||||| |||||||||||| |||||||||| |||||    
T  11351 aagaatatgttcttcacttaatctaatcattgaatccaactttcccatggtggaaaa-gattaacctttcccatgtgaaatgccacc 11266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 5e-16; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 10 - 82
Target Start/End: Complemental strand, 5523286 - 5523208
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaac------atggtggaaaatgattaacctttctcatgtgaa 82  Q
    ||||||||||| ||||||||||||||||||||||||||||      ||||||||||| |||||||||||| ||||||||    
T  5523286 aagaatatgttcttcacttaatctaatcattgaatccaactttcctatggtggaaaaggattaacctttcccatgtgaa 5523208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 10 - 78
Target Start/End: Complemental strand, 30610797 - 30610723
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaa------catggtggaaaatgattaacctttctcatg 78  Q
    ||||||||||| |||||||||||||||||||||||||||      ||||||||||||||||||||||||| ||||    
T  30610797 aagaatatgttcttcacttaatctaatcattgaatccaattttcccatggtggaaaatgattaacctttcccatg 30610723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 10 - 90
Target Start/End: Complemental strand, 33668307 - 33668221
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaa------catggtggaaaatgattaacctttctcatgtgaaatcccacc 90  Q
    ||||||||||| |||||||||| ||||||||||||||||      |||||||| |||||||||||||||| |||||||||| |||||    
T  33668307 aagaatatgttcttcacttaatttaatcattgaatccaactttcccatggtgggaaatgattaacctttcccatgtgaaatgccacc 33668221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 10 - 90
Target Start/End: Original strand, 5523846 - 5523932
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaac------atggtggaaaatgattaacctttctcatgtgaaatcccacc 90  Q
    ||||||||||| |||||||||||||||||||||||| |||      ||||||| ||| |||||||||||| |||||||||| |||||    
T  5523846 aagaatatgttcttcacttaatctaatcattgaatcaaactttccaatggtgggaaaagattaacctttcccatgtgaaatgccacc 5523932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 10 - 90
Target Start/End: Original strand, 30611345 - 30611431
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaa------catggtggaaaatgattaacctttctcatgtgaaatcccacc 90  Q
    ||||||||||| |||| ||||||||||||||||||||||      |||||||| ||| ||||||| ||||||||||||||| |||||    
T  30611345 aagaatatgttcttcagttaatctaatcattgaatccaactttcccatggtgggaaaggattaacatttctcatgtgaaatgccacc 30611431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 49
Target Start/End: Complemental strand, 6032244 - 6032205
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaac 49  Q
    ||||||||||| ||||||||||||||||||||||||||||    
T  6032244 aagaatatgttcttcacttaatctaatcattgaatccaac 6032205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 49
Target Start/End: Original strand, 12809702 - 12809741
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaac 49  Q
    ||||||||||| ||||||||||||||||||||||||||||    
T  12809702 aagaatatgttcttcacttaatctaatcattgaatccaac 12809741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 10 - 45
Target Start/End: Original strand, 6032753 - 6032788
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatc 45  Q
    ||||||||||| ||||||||||||||||||||||||    
T  6032753 aagaatatgttcttcacttaatctaatcattgaatc 6032788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 10 - 49
Target Start/End: Complemental strand, 12809155 - 12809116
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaac 49  Q
    ||||||||||| |||||||||||||||||||| |||||||    
T  12809155 aagaatatgttcttcacttaatctaatcattgcatccaac 12809116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 48
Target Start/End: Complemental strand, 31723919 - 31723881
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaa 48  Q
    ||||||||||| ||||||||||||||||||| |||||||    
T  31723919 aagaatatgttcttcacttaatctaatcattaaatccaa 31723881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 49
Target Start/End: Original strand, 33668833 - 33668869
Alignment:
Q  13 aatatgttattcacttaatctaatcattgaatccaac 49  Q
    ||||| || ||||||||||||||||||||||||||||    
T  33668833 aatatattcttcacttaatctaatcattgaatccaac 33668869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 5e-16; HSPs: 35)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 10 - 90
Target Start/End: Complemental strand, 3944981 - 3944895
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaa------catggtggaaaatgattaacctttctcatgtgaaatcccacc 90  Q
    ||||||||||| |||||||||||||||||||||||||||      |||||||| ||| |||||||||||| |||||||||| |||||    
T  3944981 aagaatatgttcttcacttaatctaatcattgaatccaactttcccatggtgggaaaggattaacctttcccatgtgaaatgccacc 3944895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 10 - 90
Target Start/End: Original strand, 23584883 - 23584969
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaa------catggtggaaaatgattaacctttctcatgtgaaatcccacc 90  Q
    ||||||||||| |||||||||||||||||||||||||||      |||||||| ||| |||||||||||| |||||||||| |||||    
T  23584883 aagaatatgttcttcacttaatctaatcattgaatccaactttaccatggtgggaaaggattaacctttcccatgtgaaatgccacc 23584969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 10 - 90
Target Start/End: Original strand, 23599706 - 23599792
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaa------catggtggaaaatgattaacctttctcatgtgaaatcccacc 90  Q
    ||||||||||| |||||||||||||||||||||||||||      |||||||| ||| |||||||||||| |||||||||| |||||    
T  23599706 aagaatatgttcttcacttaatctaatcattgaatccaactttaccatggtgggaaaggattaacctttcccatgtgaaatgccacc 23599792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 10 - 82
Target Start/End: Complemental strand, 31014423 - 31014345
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaa------catggtggaaaatgattaacctttctcatgtgaa 82  Q
    ||||||||||| |||||||||||||||||||||||||||      |||||||||||| |||||| ||||||||||||||    
T  31014423 aagaatatgttcttcacttaatctaatcattgaatccaactttcccatggtggaaaaggattaatctttctcatgtgaa 31014345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 10 - 90
Target Start/End: Complemental strand, 44868093 - 44868007
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaa------catggtggaaaatgattaacctttctcatgtgaaatcccacc 90  Q
    ||||||||||| || ||||||||||||||||||||||||      |||||||||||||||||||||||||  ||||||||| |||||    
T  44868093 aagaatatgttctttacttaatctaatcattgaatccaactttcccatggtggaaaatgattaacctttcctatgtgaaatgccacc 44868007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 10 - 82
Target Start/End: Complemental strand, 48218677 - 48218599
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaa------catggtggaaaatgattaacctttctcatgtgaa 82  Q
    |||||||||||||||||||||||||||||||||||||||      ||| |||| ||| |||||||||||||||||||||    
T  48218677 aagaatatgttattcacttaatctaatcattgaatccaacttttccatagtgggaaaagattaacctttctcatgtgaa 48218599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 10 - 82
Target Start/End: Complemental strand, 29342427 - 29342349
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaa------catggtggaaaatgattaacctttctcatgtgaa 82  Q
    ||||||||||| |||||||||||||||||||||||||||      |||||||| ||| |||||||||||| ||||||||    
T  29342427 aagaatatgttcttcacttaatctaatcattgaatccaactttcccatggtgggaaaagattaacctttcccatgtgaa 29342349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 10 - 95
Target Start/End: Complemental strand, 37374901 - 37374815
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaac-atggtggaaaatgattaacctttctcatgtgaaatcccaccgtgaa 95  Q
    ||||||||||| ||||||||||||||||||||||||||||  |   || ||| |||||||||||| |||||||||| ||||| ||||    
T  37374901 aagaatatgttcttcacttaatctaatcattgaatccaactttcccgggaaaggattaacctttcccatgtgaaatgccaccatgaa 37374815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 10 - 51
Target Start/End: Original strand, 47737673 - 47737714
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaacat 51  Q
    ||||||||||| ||||||||||||||||||||||||||||||    
T  47737673 aagaatatgttcttcacttaatctaatcattgaatccaacat 47737714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 10 - 95
Target Start/End: Complemental strand, 19555356 - 19555265
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaa------catggtggaaaatgattaacctttctcatgtgaaatcccaccgtgaa 95  Q
    ||||||||||| ||||||||||||||||||| |||||||      |||| ||| ||| ||||||||||| ||||||||||| ||||| ||||    
T  19555356 aagaatatgttcttcacttaatctaatcatttaatccaactttcccatgatgggaaaagattaacctttttcatgtgaaatgccaccatgaa 19555265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 90
Target Start/End: Complemental strand, 25025260 - 25025174
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaa------catggtggaaaatgattaacctttctcatgtgaaatcccacc 90  Q
    ||||||||||| |||||||||||||||||||||||| ||      |||| ||| ||| |||||||||||| |||||||||| |||||    
T  25025260 aagaatatgttcttcacttaatctaatcattgaatcaaactttcccatgatgggaaaggattaacctttcccatgtgaaatgccacc 25025174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 49
Target Start/End: Original strand, 29342993 - 29343032
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaac 49  Q
    ||||||||||| ||||||||||||||||||||||||||||    
T  29342993 aagaatatgttcttcacttaatctaatcattgaatccaac 29343032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 49
Target Start/End: Original strand, 31014924 - 31014963
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaac 49  Q
    ||||||||||| ||||||||||||||||||||||||||||    
T  31014924 aagaatatgttcttcacttaatctaatcattgaatccaac 31014963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 90
Target Start/End: Complemental strand, 37374051 - 37373965
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaa------catggtggaaaatgattaacctttctcatgtgaaatcccacc 90  Q
    ||||||||||| |||||||||| ||||||||||||||||      |||||||| ||| |||||||||||| ||||| |||| |||||    
T  37374051 aagaatatgttcttcacttaatttaatcattgaatccaactttcccatggtgggaaaagattaacctttcccatgtaaaatgccacc 37373965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 49
Target Start/End: Complemental strand, 42356322 - 42356283
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaac 49  Q
    ||||||||||| ||||||||||||||||||||||||||||    
T  42356322 aagaatatgttcttcacttaatctaatcattgaatccaac 42356283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 49
Target Start/End: Original strand, 43658895 - 43658934
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaac 49  Q
    ||||||||||| ||||||||||||||||||||||||||||    
T  43658895 aagaatatgttcttcacttaatctaatcattgaatccaac 43658934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 82
Target Start/End: Original strand, 44868618 - 44868696
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaa------catggtggaaaatgattaacctttctcatgtgaa 82  Q
    ||||||||||| |||||||||||||||||||||||| ||      |||||||| ||| |||||||||||| ||||||||    
T  44868618 aagaatatgttcttcacttaatctaatcattgaatcaaattttcccatggtgggaaaggattaacctttcccatgtgaa 44868696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 82
Target Start/End: Complemental strand, 55281921 - 55281843
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaa------catggtggaaaatgattaacctttctcatgtgaa 82  Q
    ||||||||||| ||||||||||||||||||| |||||||      |||||||| ||| |||||||||||| ||||||||    
T  55281921 aagaatatgttcttcacttaatctaatcattaaatccaattttcccatggtgggaaaggattaacctttcccatgtgaa 55281843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 10 - 84
Target Start/End: Original strand, 50687708 - 50687788
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaa------catggtggaaaatgattaacctttctcatgtgaaat 84  Q
    ||||||||||| |||||||||||||||||||||||| ||      |||||||| |||  ||||||||||| ||||||||||    
T  50687708 aagaatatgttcttcacttaatctaatcattgaatcaaactttcccatggtgggaaagaattaacctttcccatgtgaaat 50687788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 46
Target Start/End: Original strand, 19555923 - 19555959
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatcc 46  Q
    ||||||||||| |||||||||||||||||||||||||    
T  19555923 aagaatatgttcttcacttaatctaatcattgaatcc 19555959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 49
Target Start/End: Original strand, 37374609 - 37374645
Alignment:
Q  13 aatatgttattcacttaatctaatcattgaatccaac 49  Q
    |||||||| ||||||||||||||||||||||||||||    
T  37374609 aatatgttcttcacttaatctaatcattgaatccaac 37374645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 46
Target Start/End: Complemental strand, 49752359 - 49752323
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatcc 46  Q
    ||||||||||| |||||||||||||||||||||||||    
T  49752359 aagaatatgttcttcacttaatctaatcattgaatcc 49752323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 10 - 45
Target Start/End: Complemental strand, 23584323 - 23584288
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatc 45  Q
    ||||||||||| ||||||||||||||||||||||||    
T  23584323 aagaatatgtttttcacttaatctaatcattgaatc 23584288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 10 - 45
Target Start/End: Complemental strand, 23599146 - 23599111
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatc 45  Q
    ||||||||||| ||||||||||||||||||||||||    
T  23599146 aagaatatgtttttcacttaatctaatcattgaatc 23599111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 10 - 49
Target Start/End: Complemental strand, 32672252 - 32672213
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaac 49  Q
    ||||||||||| ||||||||||||||||||| ||||||||    
T  32672252 aagaatatgttcttcacttaatctaatcattaaatccaac 32672213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 10 - 49
Target Start/End: Complemental strand, 38575107 - 38575068
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaac 49  Q
    ||||||||||| |||| |||||||||||||||||||||||    
T  38575107 aagaatatgttcttcatttaatctaatcattgaatccaac 38575068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 10 - 49
Target Start/End: Original strand, 38575642 - 38575681
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaac 49  Q
    ||||||||||| |||||||||| |||||||||||||||||    
T  38575642 aagaatatgttcttcacttaatttaatcattgaatccaac 38575681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 10 - 49
Target Start/End: Original strand, 40887941 - 40887980
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaac 49  Q
    ||||||||||| ||||||||||||||||||||||| ||||    
T  40887941 aagaatatgttcttcacttaatctaatcattgaatacaac 40887980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 10 - 49
Target Start/End: Original strand, 41875616 - 41875655
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaac 49  Q
    ||||||||||| |||||||||||||||||||||| |||||    
T  41875616 aagaatatgttcttcacttaatctaatcattgaacccaac 41875655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 10 - 49
Target Start/End: Complemental strand, 43103985 - 43103946
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaac 49  Q
    ||||||||||||||||||||||| |||| |||||||||||    
T  43103985 aagaatatgttattcacttaatccaatcgttgaatccaac 43103946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 10 - 49
Target Start/End: Original strand, 55282421 - 55282460
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaac 49  Q
    ||||||||||| ||||||||||||||||||| ||||||||    
T  55282421 aagaatatgttcttcacttaatctaatcattaaatccaac 55282460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 48
Target Start/End: Complemental strand, 24220665 - 24220627
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaa 48  Q
    ||||||||||| |||||||||||| ||||||||||||||    
T  24220665 aagaatatgttcttcacttaatctgatcattgaatccaa 24220627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 84
Target Start/End: Original strand, 50675128 - 50675205
Alignment:
Q  13 aatatgttattcacttaatctaatcattgaatccaa------catggtggaaaatgattaacctttctcatgtgaaat 84  Q
    |||||||| ||||||||||||||||||||||| |||      ||| ||| |||| |||||||||||| ||||||||||    
T  50675128 aatatgttcttcacttaatctaatcattgaattcaactttcccattgtgaaaaaggattaacctttcccatgtgaaat 50675205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 49
Target Start/End: Complemental strand, 50687182 - 50687149
Alignment:
Q  16 atgttattcacttaatctaatcattgaatccaac 49  Q
    ||||||||||||||||||||| ||||||||||||    
T  50687182 atgttattcacttaatctaattattgaatccaac 50687149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 49
Target Start/End: Original strand, 49752913 - 49752949
Alignment:
Q  13 aatatgttattcacttaatctaatcattgaatccaac 49  Q
    ||||| || ||||||||||||||||||||||||||||    
T  49752913 aatatattcttcacttaatctaatcattgaatccaac 49752949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 10 - 90
Target Start/End: Original strand, 4386960 - 4387046
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaa------catggtggaaaatgattaacctttctcatgtgaaatcccacc 90  Q
    ||||||||||| |||||||||||||||||||||||||||      |||||||| ||| |||||||||||| |||||||||| |||||    
T  4386960 aagaatatgttcttcacttaatctaatcattgaatccaactttcccatggtgggaaaggattaacctttcccatgtgaaatgccacc 4387046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 10 - 90
Target Start/End: Complemental strand, 9224352 - 9224266
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaa------catggtggaaaatgattaacctttctcatgtgaaatcccacc 90  Q
    ||||||||||| |||||||||||||||||||||||||||      |||||||| ||| |||||||||||| |||||||||| |||||    
T  9224352 aagaatatgttcttcacttaatctaatcattgaatccaactttcccatggtgggaaaggattaacctttcccatgtgaaatgccacc 9224266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 10 - 90
Target Start/End: Original strand, 20244171 - 20244257
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaa------catggtggaaaatgattaacctttctcatgtgaaatcccacc 90  Q
    ||||||||||| |||||||||||||||||||||||||||      |||||||| ||| |||||||||||| |||||||||| |||||    
T  20244171 aagaatatgttcttcacttaatctaatcattgaatccaacttttccatggtgggaaaggattaacctttcccatgtgaaatgccacc 20244257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 10 - 90
Target Start/End: Complemental strand, 28223874 - 28223788
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaac------atggtggaaaatgattaacctttctcatgtgaaatcccacc 90  Q
    ||||||||||| ||||||||||||||||||||||||||||      ||||||| ||| |||||||||||| |||||||||| |||||    
T  28223874 aagaatatgttcttcacttaatctaatcattgaatccaactttcctatggtgggaaaggattaacctttcccatgtgaaatgccacc 28223788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 84
Target Start/End: Original strand, 16903092 - 16903169
Alignment:
Q  13 aatatgttattcacttaatctaatcattgaatccaa------catggtggaaaatgattaacctttctcatgtgaaat 84  Q
    ||||||||||||||||||||||||||||||||||||      |||||||||||| |||||||||||| ||||| ||||    
T  16903092 aatatgttattcacttaatctaatcattgaatccaactttctcatggtggaaaaggattaacctttcccatgtaaaat 16903169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 10 - 84
Target Start/End: Complemental strand, 16571204 - 16571124
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaa------catggtggaaaatgattaacctttctcatgtgaaat 84  Q
    ||||||||||| |||||||||||||||||||||||||||      |||||||| ||| |||||||||||| ||||||||||    
T  16571204 aagaatatgtttttcacttaatctaatcattgaatccaactttcccatggtgggaaaggattaacctttcccatgtgaaat 16571124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 10 - 90
Target Start/End: Complemental strand, 7716757 - 7716671
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaa------catggtggaaaatgattaacctttctcatgtgaaatcccacc 90  Q
    ||||||||||| |||||||||||||||||||||||||||      |||||||| ||| ||||||| |||| |||||||||| |||||    
T  7716757 aagaatatgttcttcacttaatctaatcattgaatccaactttcccatggtgggaaaggattaacatttcccatgtgaaatgccacc 7716671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 10 - 82
Target Start/End: Complemental strand, 11256202 - 11256124
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaa------catggtggaaaatgattaacctttctcatgtgaa 82  Q
    ||||||||||| |||||||||||||||||||||||||||      |||||||  |||||||||||||||| ||||||||    
T  11256202 aagaatatgttcttcacttaatctaatcattgaatccaactttaccatggtgagaaatgattaacctttcccatgtgaa 11256124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 10 - 90
Target Start/End: Original strand, 11256740 - 11256826
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaa------catggtggaaaatgattaacctttctcatgtgaaatcccacc 90  Q
    |||||||| || |||||||||||||||||||||||||||      ||||||||||||||||||||||||  ||||| |||| |||||    
T  11256740 aagaatatattcttcacttaatctaatcattgaatccaactttctcatggtggaaaatgattaaccttttccatgtaaaatgccacc 11256826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 10 - 82
Target Start/End: Complemental strand, 16887669 - 16887591
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaa------catggtggaaaatgattaacctttctcatgtgaa 82  Q
    ||||||||||| |||||||||||||||||||||||||||      |||||||| ||| |||||||||||| ||||||||    
T  16887669 aagaatatgttcttcacttaatctaatcattgaatccaactatcccatggtgggaaaggattaacctttcccatgtgaa 16887591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 10 - 82
Target Start/End: Original strand, 28224388 - 28224466
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaa------catggtggaaaatgattaacctttctcatgtgaa 82  Q
    ||||||||||| |||||||||||||||||||||||||||      |||||||| ||| |||||||||||| ||||||||    
T  28224388 aagaatatgttcttcacttaatctaatcattgaatccaactttcccatggtgggaaaggattaacctttcccatgtgaa 28224466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 10 - 82
Target Start/End: Original strand, 39477325 - 39477403
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaa------catggtggaaaatgattaacctttctcatgtgaa 82  Q
    ||||||||||| |||||||||||||||||||||||||||      |||||||| |||||||||||||||| ||| ||||    
T  39477325 aagaatatgttcttcacttaatctaatcattgaatccaactttcccatggtgggaaatgattaacctttcccatatgaa 39477403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 13 - 82
Target Start/End: Complemental strand, 6849371 - 6849296
Alignment:
Q  13 aatatgttattcacttaatctaatcattgaatccaa------catggtggaaaatgattaacctttctcatgtgaa 82  Q
    |||||||| |||||||||||||||||||||||||||      |||||||| ||| |||||||||||| ||||||||    
T  6849371 aatatgttcttcacttaatctaatcattgaatccaactttcccatggtgggaaaggattaacctttcccatgtgaa 6849296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 13 - 90
Target Start/End: Complemental strand, 8963587 - 8963504
Alignment:
Q  13 aatatgttattcacttaatctaatcattgaatccaa------catggtggaaaatgattaacctttctcatgtgaaatcccacc 90  Q
    |||||||| |||||||||||||||||||||||||||      |||| | ||||| |||||||||||| |||||||||| |||||    
T  8963587 aatatgtttttcacttaatctaatcattgaatccaactttcccatgatagaaaaggattaacctttcccatgtgaaatgccacc 8963504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 49
Target Start/End: Original strand, 3595895 - 3595934
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaac 49  Q
    ||||||||||| ||||||||||||||||||||||||||||    
T  3595895 aagaatatgtttttcacttaatctaatcattgaatccaac 3595934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 90
Target Start/End: Original strand, 7583793 - 7583879
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaa------catggtggaaaatgattaacctttctcatgtgaaatcccacc 90  Q
    ||||||||||| ||||||||| |||||||||||||||||      ||| |||| ||| |||||||||||| |||||||||| |||||    
T  7583793 aagaatatgttcttcacttaagctaatcattgaatccaactttcccatagtgggaaaagattaacctttcccatgtgaaatgccacc 7583879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 82
Target Start/End: Complemental strand, 10883373 - 10883295
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaa------catggtggaaaatgattaacctttctcatgtgaa 82  Q
    ||||||||||| || ||||||||||||||||||||||||      |||||||| ||| |||||||||||| ||||||||    
T  10883373 aagaatatgttctttacttaatctaatcattgaatccaactttcccatggtgggaaaggattaacctttcccatgtgaa 10883295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 49
Target Start/End: Complemental strand, 30162019 - 30161980
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaac 49  Q
    ||||||||||| ||||||||||||||||||||||||||||    
T  30162019 aagaatatgttcttcacttaatctaatcattgaatccaac 30161980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 10 - 84
Target Start/End: Complemental strand, 40165959 - 40165879
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaa------catggtggaaaatgattaacctttctcatgtgaaat 84  Q
    ||||||||||| ||||||||||| |||||||||||||||      |||||||||||||||||   ||||| ||||||||||    
T  40165959 aagaatatgttcttcacttaatccaatcattgaatccaactttcccatggtggaaaatgattggtctttcccatgtgaaat 40165879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 49
Target Start/End: Original strand, 6849545 - 6849581
Alignment:
Q  13 aatatgttattcacttaatctaatcattgaatccaac 49  Q
    |||||||| ||||||||||||||||||||||||||||    
T  6849545 aatatgttcttcacttaatctaatcattgaatccaac 6849581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 10 - 49
Target Start/End: Complemental strand, 467191 - 467152
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaac 49  Q
    ||||||||||| |||||||||| |||||||||||||||||    
T  467191 aagaatatgttcttcacttaatttaatcattgaatccaac 467152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 10 - 49
Target Start/End: Complemental strand, 3595332 - 3595293
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaac 49  Q
    ||||||||||| ||||||| ||||||||||||||||||||    
T  3595332 aagaatatgttcttcactttatctaatcattgaatccaac 3595293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 10 - 82
Target Start/End: Complemental strand, 7583218 - 7583140
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaa------catggtggaaaatgattaacctttctcatgtgaa 82  Q
    ||||||||||| ||||| |||||||||||||||||||||      |||||||| ||| ||||||||||||  |||||||    
T  7583218 aagaatatgttcttcacctaatctaatcattgaatccaattttctcatggtgggaaaggattaacctttccgatgtgaa 7583140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 10 - 82
Target Start/End: Original strand, 16571726 - 16571804
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaa------catggtggaaaatgattaacctttctcatgtgaa 82  Q
    ||||||||||| ||||||| |||||||||||||||||||      |||| ||| ||| |||||||||||| ||||||||    
T  16571726 aagaatatgttcttcacttgatctaatcattgaatccaattttcccatgatgggaaaggattaacctttcccatgtgaa 16571804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 10 - 49
Target Start/End: Complemental strand, 20243639 - 20243600
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaac 49  Q
    |||||||| || ||||||||||||||||||||||||||||    
T  20243639 aagaatatattcttcacttaatctaatcattgaatccaac 20243600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 5e-16; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 10 - 90
Target Start/End: Complemental strand, 8560242 - 8560156
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaa------catggtggaaaatgattaacctttctcatgtgaaatcccacc 90  Q
    ||||||||||| |||||||||||||||| ||||||||||      |||||||||||| |||||||||||| |||||||||| |||||    
T  8560242 aagaatatgttcttcacttaatctaatctttgaatccaacattcccatggtggaaaaggattaacctttcccatgtgaaatgccacc 8560156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 10 - 90
Target Start/End: Complemental strand, 1403126 - 1403040
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaa------catggtggaaaatgattaacctttctcatgtgaaatcccacc 90  Q
    ||||||||||| |||||||||||||||||||||||||||      |||||||| ||| |||||||||||  |||||||||| |||||    
T  1403126 aagaatatgttcttcacttaatctaatcattgaatccaactttcccatggtgggaaaggattaaccttttccatgtgaaatgccacc 1403040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 10 - 90
Target Start/End: Original strand, 6288204 - 6288290
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaa------catggtggaaaatgattaacctttctcatgtgaaatcccacc 90  Q
    ||||||||||| |||||||||||||||||||||||||||      |||||||  ||| |||||||||||| |||||||||| |||||    
T  6288204 aagaatatgttcttcacttaatctaatcattgaatccaacttctccatggtgagaaaggattaacctttcccatgtgaaatgccacc 6288290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 10 - 90
Target Start/End: Original strand, 49534396 - 49534482
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaa------catggtggaaaatgattaacctttctcatgtgaaatcccacc 90  Q
    ||||||||||| || ||||||||||||||||||||||||      |||||||| ||| |||||||||||| |||||||||| |||||    
T  49534396 aagaatatgtttttaacttaatctaatcattgaatccaacttttccatggtgggaaaggattaacctttcccatgtgaaatgccacc 49534482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 10 - 82
Target Start/End: Original strand, 7219648 - 7219725
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaa-----catggtggaaaatgattaacctttctcatgtgaa 82  Q
    ||||||||||| |||||||||||||||||||||||||||     |||| ||| ||| |||||||||||| ||||||||    
T  7219648 aagaatatgttcttcacttaatctaatcattgaatccaatttcccatgatgggaaaggattaacctttcccatgtgaa 7219725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 12 - 84
Target Start/End: Original strand, 27817006 - 27817084
Alignment:
Q  12 gaatatgttattcacttaatctaatcattgaatccaa------catggtggaaaatgattaacctttctcatgtgaaat 84  Q
    ||||||||| |||||||||||||||||||||||||||      |||||||| ||| |||||||||| | ||||||||||    
T  27817006 gaatatgttcttcacttaatctaatcattgaatccaacttttccatggtgggaaaggattaaccttacccatgtgaaat 27817084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 49
Target Start/End: Complemental strand, 48843666 - 48843627
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaac 49  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  48843666 aagaatatgttattcacttaatataatcattgaatccaac 48843627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 49
Target Start/End: Original strand, 48843962 - 48844001
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaac 49  Q
    ||||||||||| ||||||||||||||||||||||||||||    
T  48843962 aagaatatgttcttcacttaatctaatcattgaatccaac 48844001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 49
Target Start/End: Complemental strand, 49533829 - 49533790
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaac 49  Q
    ||||||||||| ||||||||||||||||||||||||||||    
T  49533829 aagaatatgttcttcacttaatctaatcattgaatccaac 49533790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 10 - 82
Target Start/End: Original strand, 8560743 - 8560820
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatcca-----acatggtggaaaatgattaacctttctcatgtgaa 82  Q
    ||||||||||| |||||||||||||||||||||||| |      |||||||| ||| |||||||||||| ||||||||    
T  8560743 aagaatatgttcttcacttaatctaatcattgaatcaacttttccatggtgggaaaggattaacctttcccatgtgaa 8560820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 10 - 84
Target Start/End: Original strand, 27797736 - 27797816
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaa------catggtggaaaatgattaacctttctcatgtgaaat 84  Q
    ||||||||||| ||||||||||||||||||||| || ||      ||| |||||||| |||||||||||| ||||||||||    
T  27797736 aagaatatgttcttcacttaatctaatcattgactctaactttcccatagtggaaaaggattaacctttcccatgtgaaat 27797816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 13 - 79
Target Start/End: Original strand, 42840316 - 42840388
Alignment:
Q  13 aatatgttattcacttaatctaatcattgaatccaa------catggtggaaaatgattaacctttctcatgt 79  Q
    |||||||| ||||||||||||||||||||||| |||      ||| ||||||||||||||||||||| |||||    
T  42840316 aatatgttcttcacttaatctaatcattgaattcaactttcccatagtggaaaatgattaacctttcccatgt 42840388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 10 - 45
Target Start/End: Original strand, 1403688 - 1403723
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatc 45  Q
    ||||||||||| ||||||||||||||||||||||||    
T  1403688 aagaatatgttcttcacttaatctaatcattgaatc 1403723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 10 - 49
Target Start/End: Complemental strand, 27797203 - 27797164
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaac 49  Q
    ||||||||||| ||||||||||||||||||||||| ||||    
T  27797203 aagaatatgttcttcacttaatctaatcattgaattcaac 27797164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 10 - 49
Target Start/End: Complemental strand, 37725465 - 37725426
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaac 49  Q
    ||||||||||| ||||||||||||||| ||||||||||||    
T  37725465 aagaatatgttcttcacttaatctaatgattgaatccaac 37725426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 10 - 49
Target Start/End: Original strand, 41563792 - 41563831
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaac 49  Q
    ||||||||||| ||||||||||||||| ||||||||||||    
T  41563792 aagaatatgttcttcacttaatctaataattgaatccaac 41563831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 10 - 49
Target Start/End: Original strand, 42839548 - 42839587
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaac 49  Q
    ||||||||||| ||||||||||||||||||||||| ||||    
T  42839548 aagaatatgttcttcacttaatctaatcattgaattcaac 42839587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 10 - 49
Target Start/End: Original strand, 43368835 - 43368874
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaac 49  Q
    ||||||||||| ||||||||||||||||||||||| ||||    
T  43368835 aagaatatgttcttcacttaatctaatcattgaatacaac 43368874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 10 - 49
Target Start/End: Complemental strand, 48369568 - 48369529
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaac 49  Q
    ||||||||||| ||||||||||| ||||||||||||||||    
T  48369568 aagaatatgttcttcacttaatccaatcattgaatccaac 48369529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 10 - 45
Target Start/End: Complemental strand, 52859235 - 52859200
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatc 45  Q
    |||||||||||||||| |||||||||||||||||||    
T  52859235 aagaatatgttattcatttaatctaatcattgaatc 52859200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 10 - 49
Target Start/End: Original strand, 52859788 - 52859827
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaac 49  Q
    ||||||||||| ||||||||||||||||||||||| ||||    
T  52859788 aagaatatgttcttcacttaatctaatcattgaattcaac 52859827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 44
Target Start/End: Complemental strand, 6287706 - 6287672
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaat 44  Q
    ||||||||||| |||||||||||||||||||||||    
T  6287706 aagaatatgttcttcacttaatctaatcattgaat 6287672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 48
Target Start/End: Complemental strand, 51247914 - 51247876
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaa 48  Q
    |||||||| || |||||||||||||||||||||||||||    
T  51247914 aagaatatattcttcacttaatctaatcattgaatccaa 51247876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 84
Target Start/End: Complemental strand, 42839023 - 42838943
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaa------catggtggaaaatgattaacctttctcatgtgaaat 84  Q
    ||||||||||| ||||||||||||||||||||| || ||      |||||||| ||| |||||||||||  ||||||||||    
T  42839023 aagaatatgttcttcacttaatctaatcattgactctaactttcccatggtgggaaaggattaacctttaccatgtgaaat 42838943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 51
Target Start/End: Complemental strand, 43368276 - 43368235
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaacat 51  Q
    ||||||||||| |||||||||| ||||||||||||| |||||    
T  43368276 aagaatatgttcttcacttaatttaatcattgaatctaacat 43368235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 48
Target Start/End: Original strand, 37725672 - 37725708
Alignment:
Q  12 gaatatgttattcacttaatctaatcattgaatccaa 48  Q
    |||||| || |||||||||||||||||||||||||||    
T  37725672 gaatatattcttcacttaatctaatcattgaatccaa 37725708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1095 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold1095
Description:

Target: scaffold1095; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 10 - 49
Target Start/End: Complemental strand, 1571 - 1532
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaac 49  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  1571 aagaatatgttattcacttaatctaatcattgaatccaac 1532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0229 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 10 - 90
Target Start/End: Original strand, 15233 - 15319
Alignment:
Q  10 aagaatatgttattcacttaatctaatcattgaatccaa------catggtggaaaatgattaacctttctcatgtgaaatcccacc 90  Q
    ||||||||||| |||||||||||||||||||||||||||      |||||||| ||| |||||||||||  |||||||||| |||||    
T  15233 aagaatatgttcttcacttaatctaatcattgaatccaactttcccatggtgggaaaggattaaccttttccatgtgaaatgccacc 15319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 50 - 90
Target Start/End: Complemental strand, 90655 - 90615
Alignment:
Q  50 atggtggaaaatgattaacctttctcatgtgaaatcccacc 90  Q
    |||||||||||||||| ||||||| |||||||||| |||||    
T  90655 atggtggaaaatgattcacctttcccatgtgaaatgccacc 90615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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