View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18313_high_21 (Length: 334)

Name: NF18313_high_21
Description: NF18313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18313_high_21
NF18313_high_21
[»] chr5 (5 HSPs)
chr5 (1-145)||(41900181-41900325)
chr5 (34-232)||(32268817-32269021)
chr5 (3-59)||(32268762-32268818)
chr5 (95-135)||(41886296-41886336)
chr5 (242-288)||(32250424-32250470)
[»] chr7 (4 HSPs)
chr7 (4-78)||(15091347-15091421)
chr7 (17-76)||(10168806-10168865)
chr7 (17-76)||(10176331-10176390)
chr7 (98-139)||(10616209-10616250)
[»] chr3 (2 HSPs)
chr3 (8-78)||(513426-513496)
chr3 (93-135)||(51120330-51120372)
[»] chr1 (2 HSPs)
chr1 (242-287)||(23204877-23204922)
chr1 (8-76)||(33161430-33161498)
[»] chr4 (8 HSPs)
chr4 (8-71)||(6007662-6007725)
chr4 (242-288)||(28719601-28719647)
chr4 (11-76)||(55907434-55907499)
chr4 (87-135)||(1488824-1488872)
chr4 (15-70)||(2525761-2525816)
chr4 (91-136)||(1537250-1537295)
chr4 (10-75)||(2168015-2168080)
chr4 (28-72)||(2625367-2625411)
[»] chr2 (2 HSPs)
chr2 (11-76)||(1036176-1036241)
chr2 (87-135)||(45244526-45244574)
[»] chr8 (2 HSPs)
chr8 (13-76)||(32152208-32152271)
chr8 (90-135)||(17642614-17642659)
[»] chr6 (1 HSPs)
chr6 (8-69)||(6395772-6395833)


Alignment Details
Target: chr5 (Bit Score: 97; Significance: 1e-47; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 41900325 - 41900181
Alignment:
Q  1 acagactgtgagagagaatcgaagattgttggagatggagagcaactgtttggagacgagtgagagagatttcaagcatacattgtcgtcgttgaggaat 100  Q
    ||||| ||| ||||||||||||||| |||||| ||||||||| ||||||||||||||||||||||||||||||||| |   ||| ||||| |||||||||    
T  41900325 acagattgtaagagagaatcgaagagtgttggtgatggagagaaactgtttggagacgagtgagagagatttcaagtagtgattatcgtctttgaggaat 41900226  T
Q  101 ttgaagacacattcgcaacactcatctggtaaatatgaaccagaa 145  Q
    |||||||||||||| ||||||||||||||||||||||||||||||    
T  41900225 ttgaagacacattcccaacactcatctggtaaatatgaaccagaa 41900181  T

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Target: chr5; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 34 - 232
Target Start/End: Original strand, 32268817 - 32269021
Alignment:
Q  34 gatggagagcaactgtttggagacgagtgagagagatttcaagcatacattgtcgtcgttgaggaatttgaagacacattcgcaacactcatctggtaaa 133  Q
    ||||||||| ||||||||||||||||  ||||||||||||||||||  ||||| ||| || | |||||||||||||||||| ||||||||||||||||||    
T  32268817 gatggagagtaactgtttggagacgatggagagagatttcaagcatcgattgttgtctttcaagaatttgaagacacattcccaacactcatctggtaaa 32268916  T
Q  134 tatgaaccagaaatatatcattgatt---ttcttctttttgcatcactg-------atgttctacttcttctttttgtttgagtggacttcatagttgcc 223  Q
    ||||||||||||    ||||||||||   ||||||||||||||||||||       ||||||| ||||||||||||||   |||||||| |||||||  |    
T  32268917 tatgaaccagaa----atcattgattttcttcttctttttgcatcactggaccgcaatgttcttcttcttctttttgtcgaagtggactccatagttagc 32269012  T
Q  224 agatgagtg 232  Q
    |||||||||    
T  32269013 agatgagtg 32269021  T

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Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 3 - 59
Target Start/End: Original strand, 32268762 - 32268818
Alignment:
Q  3 agactgtgagagagaatcgaagattgttggagatggagagcaactgtttggagacga 59  Q
    |||||||||||||||||||||||  ||||| ||||||||| ||||||||||||||||    
T  32268762 agactgtgagagagaatcgaagacggttggtgatggagagtaactgtttggagacga 32268818  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 95 - 135
Target Start/End: Complemental strand, 41886336 - 41886296
Alignment:
Q  95 aggaatttgaagacacattcgcaacactcatctggtaaata 135  Q
    |||||||||||||||||||| ||||||||||| ||||||||    
T  41886336 aggaatttgaagacacattcccaacactcatcaggtaaata 41886296  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 288
Target Start/End: Complemental strand, 32250470 - 32250424
Alignment:
Q  242 cttgcaccacggaagacagtttcaaccatatcaatgaactcttgttt 288  Q
    |||| |||||||||||||||||||||  |||||| ||||||||||||    
T  32250470 cttgaaccacggaagacagtttcaacggtatcaacgaactcttgttt 32250424  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 4 - 78
Target Start/End: Complemental strand, 15091421 - 15091347
Alignment:
Q  4 gactgtgagagagaatcgaagattgttggagatggagagcaactgtttggagacgagtgagagagatttcaagca 78  Q
    |||| ||||||| ||| ||||| |||||| ||||||||| ||||||||||||||||| |||||||| ||||||||    
T  15091421 gactctgagagaaaatagaagactgttggtgatggagaggaactgtttggagacgagggagagagaattcaagca 15091347  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 76
Target Start/End: Complemental strand, 10168865 - 10168806
Alignment:
Q  17 aatcgaagattgttggagatggagagcaactgtttggagacgagtgagagagatttcaag 76  Q
    ||||||||| |||||| ||||||||| |||||||||||||| || || ||||| ||||||    
T  10168865 aatcgaagagtgttggtgatggagaggaactgtttggagacaagggatagagaattcaag 10168806  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 76
Target Start/End: Complemental strand, 10176390 - 10176331
Alignment:
Q  17 aatcgaagattgttggagatggagagcaactgtttggagacgagtgagagagatttcaag 76  Q
    ||||||||| |||||| ||||||||| |||||||||||||| || || ||||| ||||||    
T  10176390 aatcgaagagtgttggtgatggagaggaactgtttggagacaagggatagagaattcaag 10176331  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 139
Target Start/End: Original strand, 10616209 - 10616250
Alignment:
Q  98 aatttgaagacacattcgcaacactcatctggtaaatatgaa 139  Q
    |||||||||| |||||| ||||||||||| ||||||||||||    
T  10616209 aatttgaagatacattcccaacactcatcaggtaaatatgaa 10616250  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 8 - 78
Target Start/End: Complemental strand, 513496 - 513426
Alignment:
Q  8 gtgagagagaatcgaagattgttggagatggagagcaactgtttggagacgagtgagagagatttcaagca 78  Q
    |||||||||||||| |||||||||| ||||||||| |||||||| ||||||   |||||||||||||||||    
T  513496 gtgagagagaatcggagattgttggtgatggagagtaactgttttgagacggcggagagagatttcaagca 513426  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 135
Target Start/End: Complemental strand, 51120372 - 51120330
Alignment:
Q  93 tgaggaatttgaagacacattcgcaacactcatctggtaaata 135  Q
    |||||||||||||||||||||| ||||| ||||| ||||||||    
T  51120372 tgaggaatttgaagacacattcccaacagtcatcaggtaaata 51120330  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 242 - 287
Target Start/End: Complemental strand, 23204922 - 23204877
Alignment:
Q  242 cttgcaccacggaagacagtttcaaccatatcaatgaactcttgtt 287  Q
    |||||||||| |||||||||||||||||||||||||||||||||||    
T  23204922 cttgcaccacagaagacagtttcaaccatatcaatgaactcttgtt 23204877  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 76
Target Start/End: Original strand, 33161430 - 33161498
Alignment:
Q  8 gtgagagagaatcgaagattgttggagatggagagcaactgtttggagacgagtgagagagatttcaag 76  Q
    ||||| |||||||||||| | || | ||||||||| ||||||||||||||||| || ||||| ||||||    
T  33161430 gtgagtgagaatcgaagactattagtgatggagagaaactgtttggagacgagggatagagaattcaag 33161498  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 8 - 71
Target Start/End: Original strand, 6007662 - 6007725
Alignment:
Q  8 gtgagagagaatcgaagattgttggagatggagagcaactgtttggagacgagtgagagagatt 71  Q
    |||||||||||||| ||| |||||| ||||||||| |||||||| |||||||| ||||||||||    
T  6007662 gtgagagagaatcggagactgttggtgatggagaggaactgtttcgagacgagggagagagatt 6007725  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 242 - 288
Target Start/End: Complemental strand, 28719647 - 28719601
Alignment:
Q  242 cttgcaccacggaagacagtttcaaccatatcaatgaactcttgttt 288  Q
    ||||||||| |||||||||||||||| ||||||||||||||||||||    
T  28719647 cttgcaccatggaagacagtttcaacgatatcaatgaactcttgttt 28719601  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 76
Target Start/End: Complemental strand, 55907499 - 55907434
Alignment:
Q  11 agagagaatcgaagattgttggagatggagagcaactgtttggagacgagtgagagagatttcaag 76  Q
    ||||||||||||||| |||||| ||  ||||| |||||||||||||||  ||||||||||||||||    
T  55907499 agagagaatcgaagagtgttggtgactgagagaaactgtttggagacggttgagagagatttcaag 55907434  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 135
Target Start/End: Complemental strand, 1488872 - 1488824
Alignment:
Q  87 cgtcgttgaggaatttgaagacacattcgcaacactcatctggtaaata 135  Q
    |||||||||||||||||| ||||||||| || |||||||| ||||||||    
T  1488872 cgtcgttgaggaatttgacgacacattcccagcactcatcaggtaaata 1488824  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 15 - 70
Target Start/End: Original strand, 2525761 - 2525816
Alignment:
Q  15 agaatcgaagattgttggagatggagagcaactgtttggagacgagtgagagagat 70  Q
    ||||||||||| |||||| |||||| || |||||||| |||||||| |||||||||    
T  2525761 agaatcgaagactgttggtgatggacagaaactgttttgagacgagggagagagat 2525816  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 136
Target Start/End: Complemental strand, 1537295 - 1537250
Alignment:
Q  91 gttgaggaatttgaagacacattcgcaacactcatctggtaaatat 136  Q
    |||||||||| |||| |||||||| ||||||||||| |||||||||    
T  1537295 gttgaggaatctgaatacacattcccaacactcatcaggtaaatat 1537250  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 75
Target Start/End: Original strand, 2168015 - 2168080
Alignment:
Q  10 gagagagaatcgaagattgttggagatggagagcaactgtttggagacgagtgagagagatttcaa 75  Q
    |||||||||||||||| | |||| |||||| || ||||| |||||||| | ||||||||| |||||    
T  2168015 gagagagaatcgaagactattggtgatggacagaaactgcttggagacaactgagagagacttcaa 2168080  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 72
Target Start/End: Complemental strand, 2625411 - 2625367
Alignment:
Q  28 gttggagatggagagcaactgtttggagacgagtgagagagattt 72  Q
    ||||||||||||||| || ||||||||||| || |||||||||||    
T  2625411 gttggagatggagagaaaatgtttggagactagcgagagagattt 2625367  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 76
Target Start/End: Complemental strand, 1036241 - 1036176
Alignment:
Q  11 agagagaatcgaagattgttggagatggagagcaactgtttggagacgagtgagagagatttcaag 76  Q
    ||||||||||||||| |||||| ||  ||||| |||||||||||||||  ||||||||||||||||    
T  1036241 agagagaatcgaagagtgttggtgactgagagaaactgtttggagacggttgagagagatttcaag 1036176  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 87 - 135
Target Start/End: Complemental strand, 45244574 - 45244526
Alignment:
Q  87 cgtcgttgaggaatttgaagacacattcgcaacactcatctggtaaata 135  Q
    |||||||||||||||| ||||||||||| ||||||||||| ||||||||    
T  45244574 cgtcgttgaggaatttcaagacacattcccaacactcatcaggtaaata 45244526  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 13 - 76
Target Start/End: Original strand, 32152208 - 32152271
Alignment:
Q  13 agagaatcgaagattgttggagatggagagcaactgtttggagacgagtgagagagatttcaag 76  Q
    ||||||||| ||| |||||| ||||||||| ||||||||||||||||| ||||| || ||||||    
T  32152208 agagaatcggagactgttggtgatggagaggaactgtttggagacgagggagagtgaattcaag 32152271  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 135
Target Start/End: Complemental strand, 17642659 - 17642614
Alignment:
Q  90 cgttgaggaatttgaagacacattcgcaacactcatctggtaaata 135  Q
    |||||||||||||||||||| | || ||||||||||| ||||||||    
T  17642659 cgttgaggaatttgaagacagactcccaacactcatcaggtaaata 17642614  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 69
Target Start/End: Original strand, 6395772 - 6395833
Alignment:
Q  8 gtgagagagaatcgaagattgttggagatggagagcaactgtttggagacgagtgagagaga 69  Q
    ||||| || ||||||||||  |||| ||||||||| ||||| ||||||||||| ||||||||    
T  6395772 gtgagtgaaaatcgaagatgattggtgatggagaggaactgcttggagacgagggagagaga 6395833  T

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