View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18313_high_22 (Length: 330)

Name: NF18313_high_22
Description: NF18313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18313_high_22
NF18313_high_22
[»] chr1 (11 HSPs)
chr1 (16-328)||(3380001-3380327)
chr1 (80-328)||(3366247-3366495)
chr1 (80-328)||(3373953-3374201)
chr1 (196-320)||(4333593-4333717)
chr1 (257-322)||(3342696-3342761)
chr1 (239-328)||(6599668-6599757)
chr1 (97-165)||(1793987-1794056)
chr1 (263-328)||(2007913-2007978)
chr1 (263-328)||(2021050-2021115)
chr1 (263-328)||(2947216-2947281)
chr1 (263-328)||(3353407-3353472)
[»] chr2 (4 HSPs)
chr2 (196-328)||(20936092-20936224)
chr2 (196-328)||(20954333-20954465)
chr2 (196-297)||(39275234-39275335)
chr2 (265-327)||(20924551-20924613)
[»] chr4 (1 HSPs)
chr4 (126-325)||(21238802-21239001)
[»] chr5 (1 HSPs)
chr5 (265-322)||(17971148-17971205)


Alignment Details
Target: chr1 (Bit Score: 240; Significance: 1e-133; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 16 - 328
Target Start/End: Original strand, 3380001 - 3380327
Alignment:
Q  16 caggagagtcttataaataagatactagtttacttcatttttcatcttttattaatcaattctgttaa--------------tgcgctttatatttctct 101  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||               |   ||||||||||||||    
T  3380001 caggagagtcttataaataggatactagtttacttcatttttcatcttttattaatcaattctgttaccttcagagttttagtatactttatatttctct 3380100  T
Q  102 taagcatgctatctttcccctgtgatccatgaatttgtgacaaatgcatgtaggcacggtttgacgagccgagtgtcattttaactcccacattctattg 201  Q
    ||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |||| ||||||||||||||||||||||||||||||    
T  3380101 taagcatgctatctttctcctgtgatccatgaatttgtgacaattgcatgtaggcacggtttgaggagctgagtgtcattttaactcccacattctattg 3380200  T
Q  202 ttgggaagttatcttttcaaggccagtcaatcccattcgagtgcgacatgtgacaatagatggcatctctggtatcaaatcggaattagattttattcgg 301  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  3380201 ttgggaagttatcttttcaaggccagtcaatcccattcgagtgcgacatgtgacaatagatgacatctctggtatcaaatcggaattagattttattcgg 3380300  T
Q  302 tttctacttctctattctcctatgcta 328  Q
    |||||||||||||||||||||||||||    
T  3380301 tttctacttctctattctcctatgcta 3380327  T

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Target: chr1; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 80 - 328
Target Start/End: Original strand, 3366247 - 3366495
Alignment:
Q  80 ttaatgcgctttatatttctcttaagcatgctatctttcccctgtgatccatgaatttgtgacaaatgcatgtaggcacggtttgacgagccgagtgtca 179  Q
    |||||||||||||||||||||||| |||||||| ||||||||  |||||||||||||||  || | |||||||||||||||||||  |||| || ||||     
T  3366247 ttaatgcgctttatatttctcttatgcatgctacctttcccccttgatccatgaatttgctacgattgcatgtaggcacggtttgtggagcagactgtcc 3366346  T
Q  180 ttttaactcccacattctattgttgggaagttatcttttcaaggccagtcaatcccattcgagtgcgacatgtgacaatagatggcatctctggtatcaa 279  Q
    ||||||||||||||| |||||||| | ||| |||||||||| |||||| ||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  3366347 ttttaactcccacatcctattgttcgtaagatatcttttcagggccagccatgcccattcgagtgcgacatgtgacaatagatggcatctctggtatcaa 3366446  T
Q  280 atcggaattagattttattcggtttctacttctctattctcctatgcta 328  Q
    ||||||| |||||||||||||||||||||||| ||||||||||||||||    
T  3366447 atcggaactagattttattcggtttctacttcgctattctcctatgcta 3366495  T

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Target: chr1; HSP #3
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 80 - 328
Target Start/End: Original strand, 3373953 - 3374201
Alignment:
Q  80 ttaatgcgctttatatttctcttaagcatgctatctttcccctgtgatccatgaatttgtgacaaatgcatgtaggcacggtttgacgagccgagtgtca 179  Q
    |||||||||||||||||||||||| |||||||| ||||||||| |||||||||||||||| |||| ||||||||||||||| |||| |||  || ||||     
T  3373953 ttaatgcgctttatatttctcttatgcatgctacctttcccctttgatccatgaatttgttacaattgcatgtaggcacggattgaggaggagactgtcc 3374052  T
Q  180 ttttaactcccacattctattgttgggaagttatcttttcaaggccagtcaatcccattcgagtgcgacatgtgacaatagatggcatctctggtatcaa 279  Q
    ||||||| ||||||| |||||||||||||| |||||||||| |||||| ||  ||||||| ||| | ||||||||||||||||||||||||||||||||     
T  3374053 ttttaacgcccacatcctattgttgggaagatatcttttcagggccagccatgcccattcaagtacaacatgtgacaatagatggcatctctggtatcag 3374152  T
Q  280 atcggaattagattttattcggtttctacttctctattctcctatgcta 328  Q
    ||| ||||||||||||||||||||||||||||  ||||||||| |||||    
T  3374153 atcagaattagattttattcggtttctacttcgatattctcctgtgcta 3374201  T

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Target: chr1; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 196 - 320
Target Start/End: Complemental strand, 4333717 - 4333593
Alignment:
Q  196 ctattgttgggaagttatcttttcaaggccagtcaatcccattc-gagtgcgacatgtgacaatagatggcatctctggtatcaaatcggaattagattt 294  Q
    |||||||||||||| ||||| ||||||||  |||| | |||||| |||||||||||||||| ||||||||||||||||||| | | || |||||| ||||    
T  4333717 ctattgttgggaagatatctcttcaaggctggtca-tgccattccgagtgcgacatgtgacgatagatggcatctctggtacccagtctgaattaaattt 4333619  T
Q  295 tattcggtttctacttctctattctc 320  Q
     ||  | ||||||||||| |||||||    
T  4333618 gatcagatttctacttctatattctc 4333593  T

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Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 257 - 322
Target Start/End: Original strand, 3342696 - 3342761
Alignment:
Q  257 atagatggcatctctggtatcaaatcggaattagattttattcggtttctacttctctattctcct 322  Q
    ||||||||||||||||||| |||||| |||||||||||||| |  ||||||||||| |||||||||    
T  3342696 atagatggcatctctggtaccaaatctgaattagattttatccaatttctacttctatattctcct 3342761  T

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Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 239 - 328
Target Start/End: Complemental strand, 6599757 - 6599668
Alignment:
Q  239 cgagtgcgacatgtgacaatagatggcatctctggtatcaaatcggaattagattttattcggtttctacttctctattctcctatgcta 328  Q
    |||||||||||||||| ||||||||||||||||||||||||| | || ||||| || ||  | ||| ||||||| ||||||||| |||||    
T  6599757 cgagtgcgacatgtgagaatagatggcatctctggtatcaaacctgagttagacttcatcagctttatacttctatattctcctgtgcta 6599668  T

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Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 97 - 165
Target Start/End: Original strand, 1793987 - 1794056
Alignment:
Q  97 tctcttaagcatgctatctttcc-cctgtgatccatgaatttgtgacaaatgcatgtaggcacggtttga 165  Q
    ||||||| |||| |||||||||| ||| |||||||||||||||| |||| ||||||||||||||| ||||    
T  1793987 tctcttatgcatactatctttcctcctttgatccatgaatttgtaacaattgcatgtaggcacggcttga 1794056  T

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Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 263 - 328
Target Start/End: Original strand, 2007913 - 2007978
Alignment:
Q  263 ggcatctctggtatcaaatcggaattagattttattcggtttctacttctctattctcctatgcta 328  Q
    ||||||||||| |||||||| ||||||||||||||  | |||||||||||| |||| ||| |||||    
T  2007913 ggcatctctggcatcaaatctgaattagattttatgagatttctacttctccattcgcctgtgcta 2007978  T

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Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 263 - 328
Target Start/End: Original strand, 2021050 - 2021115
Alignment:
Q  263 ggcatctctggtatcaaatcggaattagattttattcggtttctacttctctattctcctatgcta 328  Q
    |||||||||||||| ||| | |||||||||||| |  | ||||||||||||||||| |||||||||    
T  2021050 ggcatctctggtatgaaagctgaattagattttttgagatttctacttctctattcgcctatgcta 2021115  T

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Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 328
Target Start/End: Complemental strand, 2947281 - 2947216
Alignment:
Q  263 ggcatctctggtatcaaatcggaattagattttattcggtttctacttctctattctcctatgcta 328  Q
    ||||| |||||||||||||| ||||||||||||||  | ||||| |||||  ||||||| ||||||    
T  2947281 ggcatttctggtatcaaatctgaattagattttatcagatttcttcttctacattctccaatgcta 2947216  T

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Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 328
Target Start/End: Original strand, 3353407 - 3353472
Alignment:
Q  263 ggcatctctggtatcaaatcggaattagattttattcggtttctacttctctattctcctatgcta 328  Q
    ||||| |||||||||||||| ||||||||||||||  | ||||| |||||  ||||||| ||||||    
T  3353407 ggcatttctggtatcaaatctgaattagattttatcagatttcttcttctacattctccaatgcta 3353472  T

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Target: chr2 (Bit Score: 57; Significance: 9e-24; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 196 - 328
Target Start/End: Original strand, 20936092 - 20936224
Alignment:
Q  196 ctattgttgggaagttatcttttcaaggccagtcaatcccattcgagtgcgacatgtgacaatagatggcatctctggtatcaaatcggaattagatttt 295  Q
    |||||||||||||   ||||||||   ||||| ||  ||||||||||||||||||||||| ||||||||||||| ||||| ||||| |||||||||||||    
T  20936092 ctattgttgggaaaaaatcttttcggcgccagccatgcccattcgagtgcgacatgtgacgatagatggcatctttggtaacaaattggaattagatttt 20936191  T
Q  296 attcggtttctacttctctattctcctatgcta 328  Q
    ||    ||||||||||| ||||||||| |||||    
T  20936192 atcaaatttctacttctatattctcctgtgcta 20936224  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 196 - 328
Target Start/End: Original strand, 20954333 - 20954465
Alignment:
Q  196 ctattgttgggaagttatcttttcaaggccagtcaatcccattcgagtgcgacatgtgacaatagatggcatctctggtatcaaatcggaattagatttt 295  Q
    |||||||||||||| ||| |||||    |||| ||  ||||||| ||||||||||||| | || |||||||||| ||||| ||| | |||||||||||||    
T  20954333 ctattgttgggaagatatattttcggcaccagccatgcccattcaagtgcgacatgtggcgattgatggcatctttggtaccaatttggaattagatttt 20954432  T
Q  296 attcggtttctacttctctattctcctatgcta 328  Q
    ||    ||||||||||| |||||||| ||||||    
T  20954433 atcaaatttctacttctatattctcccatgcta 20954465  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 196 - 297
Target Start/End: Original strand, 39275234 - 39275335
Alignment:
Q  196 ctattgttgggaagttatcttttcaaggccagtcaatcccattcgagtgcgacatgtgacaatagatggcatctctggtatcaaatcggaattagatttt 295  Q
    |||||||||||||| || ||||||| |||||| ||  ||||| | ||| |||||||||   |||| ||||||| |||| |||||||| ||||||||||||    
T  39275234 ctattgttgggaagataccttttcagggccagccatgcccatccaagttcgacatgtgggcataggtggcatcgctggcatcaaatctgaattagatttt 39275333  T
Q  296 at 297  Q
    ||    
T  39275334 at 39275335  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 265 - 327
Target Start/End: Original strand, 20924551 - 20924613
Alignment:
Q  265 catctctggtatcaaatcggaattagattttattcggtttctacttctctattctcctatgct 327  Q
    ||||||||||| |||||| ||||||||||||||  | ||||||||||||||||| ||| ||||    
T  20924551 catctctggtaccaaatctgaattagattttatcagatttctacttctctattcacctgtgct 20924613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 126 - 325
Target Start/End: Original strand, 21238802 - 21239001
Alignment:
Q  126 atccatgaatttgtgacaaatgcatgtaggcacggtttgacgagccgagtgtcattttaactcccacattctattgttgggaagttatcttttcaaggcc 225  Q
    ||||||||||| || |||| ||| ||||||||||| | || |||| || || | | ||||| ||  | | |||||||||||||| |||||||||  ||||    
T  21238802 atccatgaattcgtaacaattgcttgtaggcacggatagaggagcagactgacctcttaacaccggcctcctattgttgggaagatatcttttcccggcc 21238901  T
Q  226 agtcaatcccattcgagtgcgacatgtgacaatagatggcatctctggtatcaaatcggaattagattttattcggtttctacttctctattctcctatg 325  Q
    || ||  ||| |   ||||| |||||| ||||||||    ||||||||| |  |||| || |||||||||||  | |||||||||||| |||||||||||    
T  21238902 agacatgcccctcaaagtgcaacatgtaacaatagacataatctctggttttcaatctgagttagattttatcagatttctacttctcaattctcctatg 21239001  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 322
Target Start/End: Original strand, 17971148 - 17971205
Alignment:
Q  265 catctctggtatcaaatcggaattagattttattcggtttctacttctctattctcct 322  Q
    ||||||||||| |||||| ||||||||||| ||| | ||||||||||  |||||||||    
T  17971148 catctctggtaccaaatctgaattagatttcattagatttctacttcaatattctcct 17971205  T

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