View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18313_high_31 (Length: 223)

Name: NF18313_high_31
Description: NF18313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18313_high_31
NF18313_high_31
[»] chr4 (8 HSPs)
chr4 (13-209)||(31162233-31162429)
chr4 (90-208)||(31488981-31489097)
chr4 (90-208)||(31030336-31030452)
chr4 (90-208)||(31159857-31159973)
chr4 (89-196)||(31501505-31501610)
chr4 (90-208)||(31020455-31020571)
chr4 (16-104)||(31151061-31151150)
chr4 (16-197)||(31496261-31496441)
[»] chr6 (7 HSPs)
chr6 (71-202)||(12781339-12781468)
chr6 (71-151)||(12785580-12785658)
chr6 (67-146)||(12782146-12782223)
chr6 (87-202)||(33060145-33060258)
chr6 (164-202)||(33361088-33361126)
chr6 (16-56)||(33265617-33265657)
chr6 (16-56)||(33274761-33274801)
[»] chr2 (1 HSPs)
chr2 (164-202)||(17438141-17438179)


Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 13 - 209
Target Start/End: Complemental strand, 31162429 - 31162233
Alignment:
Q  13 aacaaaggtgaatccattggatcagagctccttggagcaatcgagactctctgattttcattgtggtattttctaagaactatgcttcctcaactattgg 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31162429 aacaaaggtgaatccattggatcagagctccttggagcaatcgagactctctgattttcattgtggtattttctaagaactatgcttcctcaactattgg 31162330  T
Q  113 tgcttgcaagaattagaatccatccttcactgcattaaagtctccgaaaggcatgttctgcctgttttctatgatgttgatccttatgagatgagat 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31162329 tgcttgcaagaattagaatccatccttcactgcattaaagtctccgaaaggcatgttctgcctgttttctatgatgttgatccttatgagatgagat 31162233  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 90 - 208
Target Start/End: Original strand, 31488981 - 31489097
Alignment:
Q  90 aactatgcttcctcaactattggtgcttgcaagaattagaatccatccttcactgcattaaagtctccgaaaggcatgttctgcctgttttctatgatgt 189  Q
    ||||||||||||||||||  |||||||||| |||||| |||| ||||||||||| || | |||| |  | ||| | |||||| |||||||| ||||||||    
T  31488981 aactatgcttcctcaact--tggtgcttgcgagaattggaatacatccttcactacagtcaagtttttggaagacgtgttcttcctgttttttatgatgt 31489078  T
Q  190 tgatccttatgagatgaga 208  Q
    |||||||| |||| |||||    
T  31489079 tgatccttctgaggtgaga 31489097  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 90 - 208
Target Start/End: Complemental strand, 31030452 - 31030336
Alignment:
Q  90 aactatgcttcctcaactattggtgcttgcaagaattagaatccatccttcactgcattaaagtctccgaaaggcatgttctgcctgttttctatgatgt 189  Q
    ||||||||||||||||||  |||||||||| |||||| | |  ||||||| |||||| | |||| || | ||| | |||||| |||||||| ||||||||    
T  31030452 aactatgcttcctcaact--tggtgcttgcgagaattggtacacatccttgactgcagtcaagtttctggaagacgtgttcttcctgttttttatgatgt 31030355  T
Q  190 tgatccttatgagatgaga 208  Q
    |||||||| |||| |||||    
T  31030354 tgatccttctgaggtgaga 31030336  T

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Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 90 - 208
Target Start/End: Complemental strand, 31159973 - 31159857
Alignment:
Q  90 aactatgcttcctcaactattggtgcttgcaagaattagaatccatccttcactgcattaaagtctccgaaaggcatgttctgcctgttttctatgatgt 189  Q
    |||||||||||||||||   |||||||||| ||| || |||| |||||||||||||| | |||| || | ||  | |||||| ||| |||||||||||||    
T  31159973 aactatgcttcctcaaca--tggtgcttgcgagagttggaatacatccttcactgcagtcaagtttctggaactcgtgttctccctattttctatgatgt 31159876  T
Q  190 tgatccttatgagatgaga 208  Q
    |||||||| |||| |||||    
T  31159875 tgatccttctgaggtgaga 31159857  T

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Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 89 - 196
Target Start/End: Original strand, 31501505 - 31501610
Alignment:
Q  89 gaactatgcttcctcaactattggtgcttgcaagaattagaatccatccttcactgcattaaagtctccgaaaggcatgttctgcctgttttctatgatg 188  Q
    ||||||||||||||||| |  |||||||||||||||||||||   |||||| | ||| |  | || ||  |||  |||||||||||||||||||||||||    
T  31501505 gaactatgcttcctcaatt--tggtgcttgcaagaattagaaaagatccttgaatgcgtccacgtatctaaaaaacatgttctgcctgttttctatgatg 31501602  T
Q  189 ttgatcct 196  Q
    ||||||||    
T  31501603 ttgatcct 31501610  T

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Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 90 - 208
Target Start/End: Complemental strand, 31020571 - 31020455
Alignment:
Q  90 aactatgcttcctcaactattggtgcttgcaagaattagaatccatccttcactgcattaaagtctccgaaaggcatgttctgcctgttttctatgatgt 189  Q
    |||||| |||||||||||  |||||||||| |||||| | |  ||||||| |||||| | |||| || | ||| | |||||| |||||||| ||||||||    
T  31020571 aactattcttcctcaact--tggtgcttgcgagaattggtacacatccttgactgcagtcaagtttctggaagacgtgttcttcctgttttttatgatgt 31020474  T
Q  190 tgatccttatgagatgaga 208  Q
    |||||||| |||| |||||    
T  31020473 tgatccttctgaggtgaga 31020455  T

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Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 104
Target Start/End: Complemental strand, 31151150 - 31151061
Alignment:
Q  16 aaaggtgaatccattggatcagagctccttggagcaatcga-gactctctgattttcattgtggtattttctaagaactatgcttcctca 104  Q
    |||||||||||||| | | | || |||||| ||||||| || ||||||| ||||||  ||||||| || |||||||||||||||||||||    
T  31151150 aaaggtgaatccatagcacctgaactccttcgagcaattgaagactctcagatttttgttgtggttttctctaagaactatgcttcctca 31151061  T

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Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 197
Target Start/End: Original strand, 31496261 - 31496441
Alignment:
Q  16 aaaggtgaatccattggatcagagctccttggagcaatcgaga-ctctctgattttcattgtggtattttctaagaactatgcttcctcaactattggtg 114  Q
    |||||||||||||| ||| |  |||||||| | ||||| || | ||||| | ||||  ||||||| || || | ||||||||||| |||||||  | |||    
T  31496261 aaaggtgaatccataggacctaagctcctttgtgcaattgaaaactctcaggtttttgttgtggtcttatcaaggaactatgctttctcaact--tcgtg 31496358  T
Q  115 cttgcaagaattagaatccatccttcactgcattaaagtctccgaaaggcatgttctgcctgttttctatgatgttgatcctt 197  Q
    ||||||||||||||||   |||||| | ||  | || || ||  |||  ||||||||||||||||||||||||||||| ||||    
T  31496359 cttgcaagaattagaaaagatccttgaatgggtcaaggtatctaaaaaacatgttctgcctgttttctatgatgttgaccctt 31496441  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 71 - 202
Target Start/End: Complemental strand, 12781468 - 12781339
Alignment:
Q  71 cattgtggtattttctaagaactatgcttcctcaactattggtgcttgcaagaattagaatccatccttcactgcattaaagtctccgaaaggcatgttc 170  Q
    |||||| ||||| |||||||||||||||||||||||  |||||| |||| |||||| |||| ||||||||| |||| ||||      | ||  || ||||    
T  12781468 cattgttgtattctctaagaactatgcttcctcaac--ttggtgtttgcgagaattggaatacatccttcattgcagtaaaaaacatggaaaacacgttc 12781371  T
Q  171 tgcctgttttctatgatgttgatccttatgag 202  Q
    | ||||||||||||||||||||||||| ||||    
T  12781370 ttcctgttttctatgatgttgatccttctgag 12781339  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 71 - 151
Target Start/End: Complemental strand, 12785658 - 12785580
Alignment:
Q  71 cattgtggtattttctaagaactatgcttcctcaactattggtgcttgcaagaattagaatccatccttcactgcattaaa 151  Q
    |||||| ||||| ||||||||||||||||| |||||  |||||| |||| |||||| |||| ||||||||| |||| ||||    
T  12785658 cattgttgtattctctaagaactatgcttcttcaac--ttggtgtttgcgagaattggaatacatccttcattgcagtaaa 12785580  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 67 - 146
Target Start/End: Complemental strand, 12782223 - 12782146
Alignment:
Q  67 ttttcattgtggtattttctaagaactatgcttcctcaactattggtgcttgcaagaattagaatccatccttcactgca 146  Q
    |||||||||| ||||| ||||| ||||||||||| |||||  |||||| |||| |||||||| || ||||||| ||||||    
T  12782223 ttttcattgttgtattctctaaaaactatgcttcttcaac--ttggtgtttgcgagaattagcatacatccttaactgca 12782146  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 202
Target Start/End: Complemental strand, 33060258 - 33060145
Alignment:
Q  87 aagaactatgcttcctcaactattggtgcttgcaagaattagaatccatccttcactgcattaaagtctccgaaaggcatgttctgcctgttttctatga 186  Q
    ||||||||||||||||||||   |||||||||||||||||||||   ||   | | |||||||| |  || | ||  |||||||| ||||||||||||||    
T  33060258 aagaactatgcttcctcaacg--tggtgcttgcaagaattagaaaagatatgtgaatgcattaaggggtcgggaaaacatgttcttcctgttttctatga 33060161  T
Q  187 tgttgatccttatgag 202  Q
    ||||||||||| ||||    
T  33060160 tgttgatccttctgag 33060145  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 202
Target Start/End: Complemental strand, 33361126 - 33361088
Alignment:
Q  164 catgttctgcctgttttctatgatgttgatccttatgag 202  Q
    |||||||| ||||||||||||||||||||||||| ||||    
T  33361126 catgttcttcctgttttctatgatgttgatccttctgag 33361088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 56
Target Start/End: Complemental strand, 33265657 - 33265617
Alignment:
Q  16 aaaggtgaatccattggatcagagctccttggagcaatcga 56  Q
    |||||||||||||||||| | ||||||||| ||||||||||    
T  33265657 aaaggtgaatccattggacccgagctccttcgagcaatcga 33265617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 56
Target Start/End: Complemental strand, 33274801 - 33274761
Alignment:
Q  16 aaaggtgaatccattggatcagagctccttggagcaatcga 56  Q
    |||||||||||||||||| | ||||||||| ||||||||||    
T  33274801 aaaggtgaatccattggacccgagctccttcgagcaatcga 33274761  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 202
Target Start/End: Original strand, 17438141 - 17438179
Alignment:
Q  164 catgttctgcctgttttctatgatgttgatccttatgag 202  Q
    |||||||| ||||||||||||||||||||||||| ||||    
T  17438141 catgttcttcctgttttctatgatgttgatccttctgag 17438179  T

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