View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18313_high_5 (Length: 653)
Name: NF18313_high_5
Description: NF18313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18313_high_5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 593; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 593; E-Value: 0
Query Start/End: Original strand, 1 - 642
Target Start/End: Complemental strand, 29037488 - 29036847
Alignment:
| Q |
1 |
tacaaccttaaaagttgcactattccccatacagtaaatgtagcccttgtttgaaatgaatctccataagtttctacataaacttttccttgtttaatca |
100 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29037488 |
tacaaccttaaaagttgtactattccccatacagtaaatgtagcccttgtttgaaatgaatctccataagtttctacataaacttttccttgtttaatca |
29037389 |
T |
|
| Q |
101 |
caattctaagctgtgaaatgtttcctccactatccaccatttcccttgtgattcctgtactcttccatggttccaaatcttcatgaatccatctgaagtg |
200 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29037388 |
caattctaagctgtgaaatgttttctccactatccaccatttcccttgtgattcctgtactcttccatggttccaaatcttcatgaatccatctgaagtg |
29037289 |
T |
|
| Q |
201 |
ttctggacatgttgatgtagatgatgatggatcttgattttgatgaaatgcttgaattggggaatgatcctttggacaggtttgtgttgggtttccattg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
29037288 |
ttctggacatgttgatgtagatgatgatggatcttgatcttgatgaaatgcttgaattggggaatgatcgtttggacaggtttgtgttgggtttccattg |
29037189 |
T |
|
| Q |
301 |
aagcactttagtgtgaattgtgtttgttgtctattgatgattgtagttgttttcgtaagagaagtgctctttgttttgaactgatcaaagacaagaagta |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29037188 |
aagcactttagtgtgaattgtgtttgttgtctattgatgattgtagttgttttggtaagagaagtgctctttgttttgaactgatcaaagacaagaagta |
29037089 |
T |
|
| Q |
401 |
aaatgaatgtgtcatccaactaacaataattatgtttaaagattttacacatatatttaaaaatgcataattaaaacaaagataatagccatgcggaaat |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29037088 |
aaatgaatgtgtcatccaactaacaataattatctttaaagattttacacatatatttaaaaatgcataattaaaacaaagataatagccatgcggaaat |
29036989 |
T |
|
| Q |
501 |
tattagaccggacgttatgattggagttcaaacatcaactactccacttatgtgtatgagttttcaatggttatttaccatttaatctatctnnnnnnng |
600 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
29036988 |
tattagaccggatgttatgattggagttcaaacatcaactactccacttatgtgtatgagttttcaatggttatttaccatttaatctatctaaaaaaag |
29036889 |
T |
|
| Q |
601 |
atagctaatatactttttcttattaagtaccattgttgcctt |
642 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29036888 |
atagctaatatactttttcttattaagtaccattgttgcctt |
29036847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 406
Target Start/End: Complemental strand, 29017624 - 29017222
Alignment:
| Q |
1 |
tacaaccttaaaagttgcactattccccatacagtaaatgtagcccttgtttgaaatgaatctccataagtttctacataaacttttccttgtttaatca |
100 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| || | |||||||||||||||||||| |||| |||||||||||| ||||||||| |||||||| |
|
|
| T |
29017624 |
tacaaccttaaaagttgtactattccccatacagtgaacaaatcccttgtttgaaatgaatctgcatatgtttctacataagcttttccttttttaatca |
29017525 |
T |
|
| Q |
101 |
caattctaagctgtgaaatgtttcctccactatccaccatttcccttgtgattcctgtactcttccatggttccaaatcttcatgaatccatctgaagtg |
200 |
Q |
| |
|
||||||||||||||||||| ||| |||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
29017524 |
caattctaagctgtgaaatattttttccactttccaccgtttcccttgtgattcctgtactcttccatggttccaaatcttcatgaatccatctaaagtg |
29017425 |
T |
|
| Q |
201 |
ttctggacatgttgatgtagatgatgatggatcttgattttgatgaaatgcttgaattggggaatgatcctttggacaggtttgtgttgggtttccattg |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| | || ||| ||| | ||||||| |
|
|
| T |
29017424 |
ctctggacatgttgatgtagatgatgatggatcttgatcttgatgaaatgcttgaattggatgatgatccttttggcatgttcttgtcatgcttccatta |
29017325 |
T |
|
| Q |
301 |
aagcactttagtgtgaattgtgtttgttgtctattgatgattgtagttgttttcgtaagagaagtgctctttgttttgaactgatcaaagacaagaagta |
400 |
Q |
| |
|
||||| ||||||||||||||||||||||| || |||||||||||| |||| | | | |||||||| |||||||||||||||||||||| |||| ||| |
|
|
| T |
29017324 |
aagcagtttagtgtgaattgtgtttgttgccttttgatgattgta---attttggaaggtgaagtgctttttgttttgaactgatcaaagaaaagatgta |
29017228 |
T |
|
| Q |
401 |
aaatga |
406 |
Q |
| |
|
|||||| |
|
|
| T |
29017227 |
aaatga |
29017222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 434 - 485
Target Start/End: Complemental strand, 30312748 - 30312696
Alignment:
| Q |
434 |
gtttaaagattttacacatatatttaaaaatgca-taattaaaacaaagataa |
485 |
Q |
| |
|
|||||| | ||||||||||||||| ||||||||| ||||||||| |||||||| |
|
|
| T |
30312748 |
gtttaaggtttttacacatatattaaaaaatgcattaattaaaagaaagataa |
30312696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 496 - 536
Target Start/End: Original strand, 636996 - 637036
Alignment:
| Q |
496 |
gaaattattagaccggacgttatgattggagttcaaacatc |
536 |
Q |
| |
|
|||||| |||||||||||||||||||||| ||||||||||| |
|
|
| T |
636996 |
gaaattgttagaccggacgttatgattggggttcaaacatc |
637036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University